mRNA_P-littoralis_Contig646.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig646.11.1
Unique NamemRNA_P-littoralis_Contig646.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig646.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig646contigP-littoralis_Contig646:33360..34354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons3
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791345.91925-CDS-P-littoralis_Contig646:33361..334081680791345.91925-CDS-P-littoralis_Contig646:33361..33408Pylaiella littoralis U1_48CDSP-littoralis_Contig646 33362..33408 -
1680791345.9313416-CDS-P-littoralis_Contig646:33666..337411680791345.9313416-CDS-P-littoralis_Contig646:33666..33741Pylaiella littoralis U1_48CDSP-littoralis_Contig646 33667..33741 -
1680791345.9407225-CDS-P-littoralis_Contig646:34290..343541680791345.9407225-CDS-P-littoralis_Contig646:34290..34354Pylaiella littoralis U1_48CDSP-littoralis_Contig646 34291..34354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig646.11.1prot_P-littoralis_Contig646.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig646 33362..34354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig646.11.1

>prot_P-littoralis_Contig646.11.1 ID=prot_P-littoralis_Contig646.11.1|Name=mRNA_P-littoralis_Contig646.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
CPVTDRGPEEGCWLLHRDDDGDGKDVGLPFVWIRSWVSTNALKDEAAIVK
PHFLLVVHRIPK
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mRNA from alignment at P-littoralis_Contig646:33360..34354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig646.11.1 ID=mRNA_P-littoralis_Contig646.11.1|Name=mRNA_P-littoralis_Contig646.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=995bp|location=Sequence derived from alignment at P-littoralis_Contig646:33360..34354- (Pylaiella littoralis U1_48)
TGCCCAGTTACAGACAGAGGTCCAGAGGAAGGCTGCTGGCTGCTTCACCG
CGATGACGATGGAGGTGTGTTGTGTTGTGGTGTGCTGTGTTGACTGTTTG
ATCTTCTCTCTTGTCATCTGGTACCCCTGCTGCTTGTGTGCGTGTGCCGT
GCTGTGCTCGTCGCCCGGGGCAGGGCAATGAACTGCCTTGCTCGATTGCT
GTGTAGATTGCACAGCGTCACGAAGGGCTAGACTAATGCGAGGATGGATT
TTATTCTACGTATGTGTATAGGTATCTTGTGCAGCAGGACGTGTTTGAAA
AATCTCTCCGCACCAACACATGAACATGATGATTCAATACAAATACTTCG
AAGTATACATGAATACACCTGTTTAGTCTGTAGCACAGCAGACAGCTTTA
TTCATATTGTTCACAGCAGTATACTAGTGCTGTACTAGCACCCACATTTG
TATGGCCCGTACAGCAGTACTACTCTACACAGCAGTATACTAGTTATCTA
CTTATAGTTATCGAAAGAAACACGCACGTGCAAATCATCGTCCTTGGTGA
TGTACGAGTACTCAGCCAAATTCTGAACGAGCGTCAATCTGTATGCTGAA
TGAATGTTGGCAGATGGGAAGGATGTTGGTCTTCCGTTTGTTTGGATCCG
GTCCTGGGTGTCTACAAACGCGTTGAAGGACGAAGCAGGTGAGATGGATG
GGTTCAAACCGTTATTGCCTGATGCTCCGGGCCGGGCCGGATGGTGGGAA
TATCGTGCCCTATTGTCGAATTCTTGCGGCCATGACCGATGTTCAGGAGT
CTTTCCCTCGTCAGATATGTCGGTATTATCGTTAGGTTGCTCAGTTGACT
TACTTTATATACCTGGTGCGTGTTTTTCAGCCGTTTATGCGGAGCACTTT
TGGATCAACATTGCTGTTACTTTGTCCTGCCCCCCGCCGCGAACAGCAAT
CGTGAAGCCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig646:33360..34354-

>mRNA_P-littoralis_Contig646.11.1 ID=mRNA_P-littoralis_Contig646.11.1|Name=mRNA_P-littoralis_Contig646.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig646:33360..34354- (Pylaiella littoralis U1_48)
TGCCCAGTTACAGACAGAGGTCCAGAGGAAGGCTGCTGGCTGCTTCACCG
CGATGACGATGGAGATGGGAAGGATGTTGGTCTTCCGTTTGTTTGGATCC
GGTCCTGGGTGTCTACAAACGCGTTGAAGGACGAAGCAGCAATCGTGAAG
CCTCATTTTCTCCTGGTGGTTCATCGGATACCGAAG
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