mRNA_P-littoralis_Contig641.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig641.34.1
Unique NamemRNA_P-littoralis_Contig641.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.980e-21
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG+LF LGGG+IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +G  +  +  + SDS  AL++ S +MFSSRTKHIA +   LR+L     I ++H P++  L+D  TK +PK  F
Sbjct:  162 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 285          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.350e-20
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG+LF LGGG+IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +G  +  +  + SDS  A   G  +MFSSRTKHIA +   LR+L     I ++H P +  L+D  TK +PK  F
Sbjct:   47 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRELTKGHRITLHHQPGATILADIATKHLPKQRF 170          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.690e-20
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG+LF LGGG+IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +G  +  +  + SDS  AL++ S +MFSSRTKHIA +   LR+L     I ++H P++  L+D  TK +PK  F
Sbjct:  599 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 722          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.800e-20
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG+LF LGGG+IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +G  +  +  + SDS  AL++ S +MFSSRTKHIA +   LR+L     I ++H P++  L+D  TK +PK  F
Sbjct:  758 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 881          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6D2L4J7_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L4J7_9BRAS)

HSP 1 Score: 90.1 bits (222), Expect = 2.380e-19
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVP 583
            +G++F +GG  +S  + LQ VV+ STTEAE  A   A +EG+++   L+ +G+      ++ DSQSA+ L   + F  RTKH+ATK H +R +++E  + V  I TS+  +D LTK +P
Sbjct:   32 SGYIFTVGGNTVSWKSCLQSVVALSTTEAEYIAFSEAVKEGIWICGLLEDMGLKPEKATVWCDSQSAICLSKNNAFHERTKHVATKYHFIRDIIEEGEVEVLKIHTSVNPADMLTKGIP 150          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.930e-19
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPK 586
            TG+LF LGGG+IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +G  +  +  + SDS  AL++ S +MFSSRTKHIA +   L +L     I ++H P++  L+D  TK +PK
Sbjct:  676 TGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATKHLPK 796          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6D2J922_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J922_9BRAS)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-18
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG++F +GG V+S  + LQ+VV+ STTEAE  AL  A +EG++L   ++ LG       ++ DSQSA+ L   ++F  RTKH+A K H +R   +  T+ +  IPT    +D LTK +P   F
Sbjct:  358 TGYVFRVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWLRGLVEELGFKQEATDIWCDSQSAICLAKNNVFHERTKHVAVKYHFIRDETEVGTVKIQKIPTERNPADMLTKVIPVQKF 480          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A5BC16_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BC16_VITVI)

HSP 1 Score: 89.4 bits (220), Expect = 1.720e-18
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTV 580
            TGF+F LGG  IS A+ LQK+V+ STTEAE  A   A +E ++L  FL  LG       L SDSQSA+ L   S F S++KHI TK H +R LV++  +++  I  S  L++ LTK V
Sbjct:   90 TGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNLANMLTKGV 207          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A438KLS3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KLS3_VITVI)

HSP 1 Score: 87.8 bits (216), Expect = 1.150e-17
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTV 580
            TGF+F LGG  IS  + LQK+V+ STTEAE  A   A +E ++L  FL  LG       L SDSQSA+ L   S+F S++KHI TK H +R LV++  +++  I  S   +D LTK V
Sbjct:  120 TGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSVFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGV 237          
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5KSX7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.270e-17
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSI-TTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
            TG+LF +GG +IS  A  Q + +Q+T EAEL AL  ++RE VY+ NF+  +   I  +  + SDS  AL++ S +MFSSRTKHIA +   LR+   E  I ++H P+   L+D  TK +PK  F
Sbjct:  618 TGYLFFVGGRLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIVFKIFRSVPINSDSTVALTVASNAMFSSRTKHIALRFFFLREPTKEHRITLHHQPSDTMLADIATKHLPKQRF 741          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC04_9PHAE2.980e-2145.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4K1_9PHAE2.350e-2044.35Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE2.690e-2045.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE2.800e-2045.16CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6D2L4J7_9BRAS2.380e-1939.50Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6H5JN55_9PHAE5.930e-1944.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2J922_9BRAS1.570e-1840.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BC16_VITVI1.720e-1846.61Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438KLS3_VITVI1.150e-1745.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KSX7_9PHAE1.270e-1743.55Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig641contigP-littoralis_Contig641:126333..126927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5501.XP_001248977.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size595
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.6e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20FR9@147545|Eurotiomycetes,3B6B5@33183|Onygenales,3FJES@34383|Onygenales incertae sedis
DescriptionEncoded by
Cds size309
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791340.494782-CDS-P-littoralis_Contig641:126332..1266411680791340.494782-CDS-P-littoralis_Contig641:126332..126641Pylaiella littoralis U1_48CDSP-littoralis_Contig641 126333..126641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791340.5114045-UTR-P-littoralis_Contig641:126641..1269271680791340.5114045-UTR-P-littoralis_Contig641:126641..126927Pylaiella littoralis U1_48UTRP-littoralis_Contig641 126642..126927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig641.34.1prot_P-littoralis_Contig641.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig641 126333..126641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig641.34.1

>prot_P-littoralis_Contig641.34.1 ID=prot_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVH
RKGDMTLQGFTDSDFAADDDTRRSLHRVLVHVGWWCNFVCCCTAKGCFAK
YY*
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mRNA from alignment at P-littoralis_Contig641:126333..126927+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig641.34.1 ID=mRNA_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=595bp|location=Sequence derived from alignment at P-littoralis_Contig641:126333..126927+ (Pylaiella littoralis U1_48)
ATGTATTTAGTGAACACTACTCGATGGGATATTAGCTATGCCGTGATGAT ACTCACACGCGGCATGGCAGCTCCCACCGATCAGCATATGGTTGCTGCCA AGCGTGTTCTACGCTATCTTTGGGGAACACCGGATCTTCCTACTGTGCAT CGCAAAGGAGACATGACCCTGCAGGGCTTCACGGATAGCGACTTCGCGGC AGATGACGATACGCGCCGCTCCTTGCACCGGGTTCTTGTTCATGTTGGGT GGTGGTGTAATTTCGTCTGCTGCTGTACTGCAAAAGGTTGTTTCGCAAAG TACTACTGAGGCGGAACTGACTGCCCTGCACGCTGCTTCACGGGAAGGTG TGTACCTTCTCAACTTTCTTAAATAACTGGGCGTTAGTATTACGACCTTT CATCTTTTCTCGGATTCTCAATCTGCTTTGAGTCTGGGTTCGCAATCCAT GTTCTCTTCGCGGACGAAACATATTGCGACAAAGTCTCATCTGCTTCGTC AACTGGTGGACGAATCAACCATCGTTGTTAATCATATACCAACGAGTCTT CAGCTCAGCGACTGCTTGACGAAAACCGTACCGAAACCAGCCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig641:126333..126927+

>mRNA_P-littoralis_Contig641.34.1 ID=mRNA_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig641:126333..126927+ (Pylaiella littoralis U1_48)
ATGTATTTAGTGAACACTACTCGATGGGATATTAGCTATGCCGTGATGAT
ACTCACACGCGGCATGGCAGCTCCCACCGATCAGCATATGGTTGCTGCCA
AGCGTGTTCTACGCTATCTTTGGGGAACACCGGATCTTCCTACTGTGCAT
CGCAAAGGAGACATGACCCTGCAGGGCTTCACGGATAGCGACTTCGCGGC
AGATGACGATACGCGCCGCTCCTTGCACCGGGTTCTTGTTCATGTTGGGT
GGTGGTGTAATTTCGTCTGCTGCTGTACTGCAAAAGGTTGTTTCGCAAAG
TACTACTGA
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