mRNA_P-littoralis_Contig64.46.10 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig64.46.10 vs. uniprot
Match: A0A6H5KYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD8_9PHAE) HSP 1 Score: 735 bits (1897), Expect = 7.910e-230 Identity = 825/1564 (52.75%), Postives = 945/1564 (60.42%), Query Frame = 1
Query: 373 MGRGRR-MGHAERKRRRAGFVGGAARALALGVAVGS-VSNNAVTATRT-LPAIGAAVRDAGGCRLRVTIWGEGAAC------GPVDTEEECDKYNPDLVQAFIGDERREAVI--VSTTGTSGWREELGFDCAHGRDKLVVTLRDKLLRALATCEVGEASPIGSGRAMVCEGAHGTNFNYAVEY-ANLAPPLLMEPMRRLQTNTSD-TPAPVAPIAEETFSPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAEPVAAAXXXXXXXXXXXXXXXXXXXXXAPATEEPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVTXXXXXXXXXXXXXXXXXXVAPVA-APTGETVAPMTSXXXXXXXXXXXXXXXXXTAAPTAGAP--PVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVVTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLP----------PTSETPTSS-----TGTSNPDXXXXXXXXXXXXXXXXXXXXXXXXXTPVEASTTPSPVEAPRPTASTSSPVAARSDNPTMSQPESTAPPVAGSSTSSPEVVGTPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTPPAVPLSSP---------------------PSQSPSASASXXXXXXTTAPEEATPDXXXXXXXXTIADRPTTAPVSTPATGDEPSXXXXXXXXXXXXEATLSPNADDLCTDTCT-NNPSGDDFSSFYYDERCEGKTSADLSGCNLGTEFDKTLENCRRCIFNVAEFET--GIGEADWPDCPCCVADLLDMEPQTDECIAEF--AGTTPAPSVT-EADIDLTTSANDPNLMMVSFNSEDCTMSGIAIISETT--VMEVTRYTDGNGNCESSNPAMEIIYGTECEATDYSWGFGENSYFYEYTCTDSTTSGGRRRLAVETSE---FDSTTVLCNNGDIFFTLSNLPGEEEGLVYATQDAVNFSAITGDLDAQSGDPYCGE--DLTTVATTVLET----GVDNVLEEPDETSGDGETIPYEIVIPVLGALVLFMICGCLCCYRHRKGKEGRADQMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGG-PQVAPDLNPTQNNYTPQTYPMGHHRAPSEAPSSIIENNIANNYRPKTAAKSWKKRKEHKEHTKPPPQQHVIGAAPTAEELKAENSR--------TQTGSVTLSEPISQHSLSQLELANQTAAAQPNYGYAFEEADVDXXXXXXXXARSAATGMSGPSKYAPSXXXXSSHHGGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDEASAYSYNDGGAGGGGSVRRTGHGGRGRVVSGRASVADTAAMSHLGSVMEMDDS-SAYAPSDSYVSSYISSEDDDGRPARSIHPRAGP-DQPAGGSSPPEGSGSGG------GYSRHNVHRSGREGGXXXXXXXXXXXXXXXXXXXXXXXXXXXMSRDFDDDVDDSA-----------DYYSEDQTAASGMDSGRGTPLTNLDETHDGRRW 4773
+G GRR M ER RR G +GGA RALALG+ +G S+ +TA + LPA AA C VT+WGE AAC V +++ D VQA +G R+EA + V G+ WR+ L F C GRDKLVVTL D L+R LATCEVGE + I S +AM CEGAHG +F YAVE+ A LA P+ P RR Q+ TS TP P A + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PATE P P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX +PV T AP+ + XXXXXXXXXXXXXXX AP A P V XXXXXXXXXXXXXXXXXXXXXXXXXX + + TD XXXXXXXX + P P P SS TG + P XXXXXXXXXX P +TP P +P PTA T A ST+SP TP XX XXXXXXXXXXXXXXXXXXXXXXXXXXXX + P P SSP P S A T XXXXXXXX+ A AP S+PA PS EATLSPN +++CT C +N + FS+ YYD RCEGK +DLSGCNL + + NCR CI ++ FE G G DWP CPCCVA+ L M+PQTDECIAE A TTPAP++ + ++LTT ANDP+L+M+SFNS+DCT GIA+I T VMEV YTD NG C S+ + + GTECE YSW + ++S+ Y YTC+ ST S GRRRLA SE F+S VLCNNG F +LS+ G E GLVYAT DA N+ ++T A SG CG D V T +LE G+ +LEE DE+S +G+ + YEI+I ++ +VL M C C CCYRHRKGKE R MRRNLG+TPDMEAKGEGNFGPTNKHVAITRGG PQV P++ T +Y+ ++P H RAPSEAPSSIIE+NIANNYRPKTAAKSWK+RK HK+ TKP PQQHVIG +P +EELKAE+SR T++ + SE +S+HSLSQL++ANQTAAAQPNYGY FE + XXXXXXXARSAATGMSGPSKYAPS XXXS+H GVTHDLMSQYEPSVYEADXXXXXXXXXXXXXX E+S+YSYNDG R VSGRASVADTAAMSHLGSVMEMDD SAYAPS+SYVSSY+SSEDDDGRPARSIHPR GP D A G P +G GYSRHN HRSGR+ XXXXXXXXXXXXXXXXXXXXXXXX SR +DD+ D+SA +YYSED A GM SGRG PLT+L+ETH G+RW
Sbjct: 2 VGGGRRAMADVERPTRRRGKMGGAGRALALGLTIGGWASSQGLTAAASDLPAAAAAGSQE--CGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVRKEAGLGPVREAGSPVWRQVLDFGCVDGRDKLVVTLYDNLMRPLATCEVGETASIESSKAMGCEGAHGMHFKYAVEHTALLAEPI--RPQRRAQSVTSTATPTPAAVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPEM---------------------------------PATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITESPVTPGXXXPTPAPVAAVVXXXXXXXXXXXXXXXPQAPVAAPSLEPTVGTTDXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTARVTETPVVXXXXXXXXGPAGAVTASPVASPPPVDFLSSSPSTPXXXVPPSSXSDPPTGLAAPPTERPXXXXXXXXXXTPEPPTDSPVLPPFPVPSTPRPTTSP-PTAVTXMXXAXTXXXXXXXXXXXXX--XXXXSTTSPS---TPQ------XXAARPNAAAFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMNPLPREAPSSSPTRSXSSXXXXXXXXXXXXXXSPVVSTETVAPGAGAAVTXXXXXXXXXXXXXXXXXSAAAGEAPAPFSSPAPVATPSSPA---------EATLSPNTEEVCTTACVEDNVTVSYFSATYYDARCEGKDDSDLSGCNLSSA-NSEWNNCRYCIIDLESFEAENGEGSVDWPLCPCCVAETLGMDPQTDECIAEAGTAVTTPAPTMFGQTTLELTTEANDPDLLMMSFNSDDCTAFGIAVIPGTPPKVMEVAGYTDANGLCNSN---FDKLVGTECELESYSWDYSDSSFEYMYTCSTST-SAGRRRLADGGSEAYPFESDAVLCNNGAHFVSLSSFDGGETGLVYATPDAENYDSVTNSQTALSGSDMCGASTDANVVTTMLLEQIEEEGLSGLLEEADESSSEGDGLGYEIIIGIVCVVVLLMGCACFCCYRHRKGKESRGVHMRRNLGFTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLAT-TSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKERKAHKDLTKPVPQQHVIGGSPNSEELKAEDSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEGEXXXXXXXARSAATGMSGPSKYAPSGXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXESSSYSYNDGAGXXXXXXXXXXXXXXXRHVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDHNAG-GMTSGRGAPLTDLEETHGGQRW 1500
BLAST of mRNA_P-littoralis_Contig64.46.10 vs. uniprot
Match: D8LQ66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ66_ECTSI) HSP 1 Score: 697 bits (1798), Expect = 9.640e-220 Identity = 471/809 (58.22%), Postives = 551/809 (68.11%), Query Frame = 1
Query: 2500 EATLSPNADDLCTDTCT-NNPSGDDFSSFYYDERCEGKTSADLSGCNLGTEFDKTLENCRRCIFNVAEFETGIGEADWPDCPCCVADLLDMEPQTDECIAEFAGTTPAPS-VTEADIDLTTSANDPNLMMVSFNSEDCTMSGIAIISETT--VMEVTRYTDGNGNCESSNPAMEIIYGTECEATDYSWGFGENSYFYEYTCTDSTTSGGRRRLA---VETSEFDSTTVLCNNGDIFFTLSNLPGEEEGLVYATQDAVNFSAITGDLDAQSGDPYCGE--DLTTVATTVLET-----GVDNVLEEPDETSGDGETIPYEIVIPVLGALVLFMICGCLCCYRHRKGKEGRADQMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGG-PQVAPDLNPTQNNYTPQTYPMGHHRAPSEAPSSIIENNIANNYRPKTAAKSWKKRKEHKEHTKPPPQQHVIGAAPTAEELKAENSR--------TQTGSVTLSEPISQHSLSQLELANQTAAAQPNYGYAFEEADVDXXXXXXXX-ARSAATGMSGPSKYAPSXXXXSSHHGGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDEASAYSYNDGGAGGGGSVRRTGHGGR-------GRVVSGRASVADTAAMSHLGSVMEMDDS-SAYAPSDSYVSSYISSEDDDGRPARSIHPRAGP-DQPAGGSSPPEGSGSGGG-------YSRHNVHRSGREGGXXXXXXXXXXXXXXXXXXXXXXXXXXXMSRDFDDDVDDSA-----------DYYSEDQTAASGMDSGRGTPLTNLDETHDGRRW 4773
EATLSPN +++CT+ C +N + S+ YYD RCEGK +DLSGCNL + + NCR CI N+ FE GEA A TTP P+ V E +DL T ANDP+L+M+SFNSEDCT GIA+I T VME++RYTD +G C S+ +I+ GTEC+ YSW + NS+ Y YTC+ +TTS GRRRLA ET +S VLCNNGD F +LS+L E GLVYAT DA N+ ++T + SG CGE D V T +LE G+ +L E DE+S +G + YEI+I ++ A+VL M C C CCYRHRKGKE RA MRRNLGYTPDMEAKGEGNFGPTNKHVAITRGG PQV P++ T +Y+ ++P H RAPSEAPSSIIE+NIANNYRPKTAAKSWKKRKEHK+ TKP PQQHVIG +P +EELKAENS T++ + SE +S+HSLSQL++ANQTAAAQPNYGY FE + + XXXXXXX ARSAATGMSGPSKYAPSXXXXS+H GVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDE+S+YSYNDG RR G+ G GR +SGRASVADTAAMSHLGSVMEMDD SAYAPS+SYVSSY+SSEDDDGRPARSIHPR GP D A G P +G YSRHN HRSGR+ XXXXXXXXXXXXX SR +DD+ D+SA +YYSEDQ A GM SGRG PLT+L+ETH G+RW
Sbjct: 378 EATLSPNTEEVCTEACVVDNLTLSTHSATYYDARCEGKDDSDLSGCNLSSA-NSDWNNCRNCIINLESFEAENGEAG------------------------TAVTTPTPTMVGETTLDLRTEANDPDLLMMSFNSEDCTAFGIAVIPGATPKVMEISRYTDADGLCNSN---FDILVGTECDLESYSWAYSSNSFDYMYTCS-TTTSAGRRRLADGGSETYPIESDAVLCNNGDHFVSLSSLADGETGLVYATPDAENYDSVTDSQTSLSGSDMCGESTDANVVTTMLLEEIEEDDGLSGLLGEADESSSEGGGLRYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLAT-TSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSHEGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAG-----SRRGGYAGXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXXXYSRHNAHRSGRQPVASGRSGFGAXXXXXXXXXXXXXSGFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAG-GMTSGRGAPLTDLEETHGGQRW 1150
BLAST of mRNA_P-littoralis_Contig64.46.10 vs. uniprot
Match: D8LQ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ65_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.510e-23 Identity = 69/157 (43.95%), Postives = 87/157 (55.41%), Query Frame = 1
Query: 391 MGHAERKRRRAGFVGGAARALALGVAVG--SVSNNAVTATRTLPAIGAAVRDAGGCRLRVTIWGEGAAC------GPVDTEEECDKYNPDLVQAFIGDERREAVI--VSTTGTSGWREELGFDCAHGRDKLVVTLRDKLLRALATCEVGEASPIGSG 831
M ER RR G +GGAARALALG+ +G + S A LPA AA + C VT+WGE AAC V +++ D VQA +G +EA + V G+S WR+ L F C GRDKLVV+L D L+R LATCEVG +P+ G
Sbjct: 1 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLAAAASHLPAAAAAAAGSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLNFGCVDGRDKLVVSLYDNLMRPLATCEVGTVNPVYCG 157 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.46.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig64.46.10 >prot_P-littoralis_Contig64.46.10 ID=prot_P-littoralis_Contig64.46.10|Name=mRNA_P-littoralis_Contig64.46.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1468bp MGRGRRMGHAERKRRRAGFVGGAARALALGVAVGSVSNNAVTATRTLPAIback to top mRNA from alignment at P-littoralis_Contig64:219503..237688- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig64.46.10 ID=mRNA_P-littoralis_Contig64.46.10|Name=mRNA_P-littoralis_Contig64.46.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=18186bp|location=Sequence derived from alignment at P-littoralis_Contig64:219503..237688- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig64:219503..237688- >mRNA_P-littoralis_Contig64.46.10 ID=mRNA_P-littoralis_Contig64.46.10|Name=mRNA_P-littoralis_Contig64.46.10|organism=Pylaiella littoralis U1_48|type=CDS|length=4404bp|location=Sequence derived from alignment at P-littoralis_Contig64:219503..237688- (Pylaiella littoralis U1_48)back to top |