mRNA_P-littoralis_Contig639.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig639.31.1
Unique NamemRNA_P-littoralis_Contig639.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig639.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig639contigP-littoralis_Contig639:129897..136880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size945
Hectar predicted targeting categoryother localisation
Exons3
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791329.6507828-UTR-P-littoralis_Contig639:129896..1302231680791329.6507828-UTR-P-littoralis_Contig639:129896..130223Pylaiella littoralis U1_48UTRP-littoralis_Contig639 129897..130223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791329.663105-CDS-P-littoralis_Contig639:130223..1302631680791329.663105-CDS-P-littoralis_Contig639:130223..130263Pylaiella littoralis U1_48CDSP-littoralis_Contig639 130224..130263 +
1680791329.6792612-CDS-P-littoralis_Contig639:131394..1318731680791329.6792612-CDS-P-littoralis_Contig639:131394..131873Pylaiella littoralis U1_48CDSP-littoralis_Contig639 131395..131873 +
1680791329.6909378-CDS-P-littoralis_Contig639:136781..1368801680791329.6909378-CDS-P-littoralis_Contig639:136781..136880Pylaiella littoralis U1_48CDSP-littoralis_Contig639 136782..136880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig639.31.1prot_P-littoralis_Contig639.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig639 130224..136880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig639.31.1

>prot_P-littoralis_Contig639.31.1 ID=prot_P-littoralis_Contig639.31.1|Name=mRNA_P-littoralis_Contig639.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MAWRHHPRQHLMIHQRRARQTTSNFPASTAARPCYRAGGGAGATRNLTDS
MKRVREPFAQAGSRNSLPLPPASGGKRVRPEVQQQQLYHDHRSRTATQEQ
QQQQQQQQQQGPFQALLAEHGVVWPSAGGLEGDSETERRSSLGFSCRRNP
SKLRVGLKRALVHDRARRGEFVEGMKEFMEGPVHALRRALLPLDCCGENR
GGGGGG
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mRNA from alignment at P-littoralis_Contig639:129897..136880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig639.31.1 ID=mRNA_P-littoralis_Contig639.31.1|Name=mRNA_P-littoralis_Contig639.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6984bp|location=Sequence derived from alignment at P-littoralis_Contig639:129897..136880+ (Pylaiella littoralis U1_48)
AGCCAAGGACGGAGGTAGACGAGCAGCGACGAACGGGGAAGAGCTTGGTC
GATCTCACTCCGAGCGTGAACTTTTTTTTCAGAAGACTTGTACCTCAAGT
GAACAGCAGTGGAGTTTTTTACGGAACTGATTGGAAAGGAACAAGAAAGA
GCTGTCATGTAAGAGAGCGGCGGTGATGGAGGTGACCTAAGGCAACGCCG
GCAGTGAAGAAGCGTTATTACGAGAGCATGGTGCTGGTGATGTGGCCTTG
GGCAACGCCAACAGCAACAACGTGGACCCAGACAAGGAGGAAATGTATAG
GACGACATCATCACCAGCGTCGCAAAGATGGCATGGAGACACCATCCTCG
ACAACATCTGATGATACGTGCGTGTTTTTGTGTTTTTTCTTCGTCTGTCT
TCTCCGATTGCCGGGGCTACTTGTACGTTGCAGGCAGCACTCCAGACAGC
AACTAACTGCTGTAGTCTGCAGCTACCTACTGACTGCTTGGAACAGCAGG
TTATTAGTTAAAAGTGGGGCGGGAGGAGACTCAACACGATGTTGTAGTCA
AATGAACGACGCGGGAAGTACCGTATTCTACACAAGATACCACACCCCGT
GTTTTTGCATTCCGTTTTGCTCCACAACCAGGAGGGTGCGAACACCAAAC
AGCCCGTCATACGAAAGCTCTCGACGAGATCTTTCCAAAACCACCCTTTT
CGGCAGTGGCACCCTCCTGGTTGTGGAGCTATACGGAATGCTAAAAGCTT
AACACGGGGTGTGGTATCTTGTGTAGAATACGGTAGTTCGATGTTGGTAC
TGCTGTATCTTCTTCGCTCTTTTTTGCGTAATTCCCTTGTAGTTTCTTCT
TTCTTTTTTTCGGATCTTCCTAGGGCTCAGCACTTTTGTGACTACGGGCT
AGATTTTCGGCGACCAACCTCGTTCCAAACAAACCACACAACATACATGA
CGTAATCTGCTTCTGCTAGACAGAGTATACGTAAGGCTTTGGACGCTTCT
CGACGTTGGCCTTGCAGAGCATAAAGTATTCAGGGGCGTCACAAACTTTC
TGCAGATAGATGTCTGCCATGGGGCGCCTGCCTGTACGTTTTTTGTCATT
CATGTCACTTGCCATGATCCCAGCAGTAGTCGAAGTCCACTCCCCCTCGA
GATTTGACGAACCCCCCGCCAAGAAAAAATAAATAAATATGGGCATGCCG
AGAAAATGCTCATATGCCCCAAACTGACTTGAAAACAAAAAATTCAGTCC
CCATTTGCACGAGCCGGCTCCCCCGAGCCGGGAGGGTGTGTACGTGCAGC
ACTTCTGCGTAGACGTCTCGTTGGTTTCTTTATCGTTGCAGTTGAACTTA
CCTGCTGCGGAGGTGTTGCGCATAAAATCACAAGAGGAGAGCGGCAAACG
GGCACCAAACCCGAACATTTCTTTGTTTTGTTTTTGAACAAGAGCAAAAA
TTAAAAATTCAAACCTGGCGGTTGGTTTGAAATTGTTTCACACCACAGAC
CAGCGACGAGCTCGCCAAACAACCTCAAACTTTCCTGCGTCCACTGCAGC
AAGACCTTGTTATCGTGCCGGTGGCGGAGCCGGTGCTACTCGTAACCTTA
CCGATTCGATGAAGCGTGTCCGTGAACCCTTTGCCCAAGCCGGCTCCCGG
AACTCGCTGCCGCTCCCACCTGCATCCGGCGGGAAGCGAGTCAGGCCAGA
GGTGCAACAACAACAACTCTACCATGATCATCGGAGCAGGACCGCTACCC
AAGAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGCCCCTTCCAA
GCGCTCCTAGCCGAGCACGGGGTGGTGTGGCCCTCGGCTGGGGGTTTGGA
AGGAGATTCGGAGACCGAGAGGCGGTCTTCTCTGGGGTTCTCTTGCCGCA
GGAACCCGTCCAAGCTGCGCGTTGGGCTGAAGAGAGCGCTGGTGCATGAC
CGCGCTCGGAGAGGCGAATTCGTTGAGGTGACATGATAGCACTGCTGCTT
TGTAGCTGTAAGTACGAACACAACATTTCACATGATATGTTGCCTTTGAT
TTTGATGACTGCTGTCATGTACTTCGAGTACTGCTGTTCAGTGGTCGGTA
TGATGGGGCTGCACCACAGCACATAGCAGCATGAGTGCTACACAGCAGTT
GTAAACGATGGCACTTGCATACTTTGTATATAGGTCGCCTACGATAGATA
CCACACCCCCTTCTGTTTCTTACACGCTGTTGTTGTTGTTGATTCTCACA
TTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATA
TCGTGGGATATCGTGCTAAGGAGGAAAAAATAAAAAAATAAAATATATGG
ACTATGACCACCCACAGTCAAATCAGATATGGTACCGTTGAGGTACCATC
TGTGGTGGCCAAAATACCAAACAAATACAGAAACAAAAATAACAGGCTCG
AAAGCAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAATAACCAAGA
CAAACCCCAACCATAATGCCCTGTATTAGACTACTTATCATGTGTAATAT
CTGATCAGATTATTTTTGATCAAAAATGATCTCATCAAAAATGACGAGGT
GTCTCGACGCCCCGAATCTTATGTGTCATAAAATATTTATCAGAAAAAAA
GTTGGGTTTCATAGGTTCCCGAGCGGCGTTTGGGCAACACAATTCAAATC
CGCGCGCGAAACGAGACTGTCCACGGACGGTTCCGCTACAATGCTCAAAC
GCGTCAACAGCGATTCAGCAGACGGCACACAGAGCAACCCGAGCAGCACG
GCGCACCACAGCCAGCCATGGACATCAACGTAGACGAAGTACTACCCCCT
TGGTATATAATGATTACGTCAAGACGTCGATCAACCTCGCGCTAGAGAAC
AAGAAATTGTTCACCGTGAAGCAACAGACGGCGATGAAGCAACACGCTGA
CCACCCACCACAAGTAGCAGTAGGAGCAGCAGTGATGGCAGCCGAGCTGG
CATAGCGCTTTTGTGGGGATGTGAGTCTGTGGGATGTGCGTCTTGGTGTC
GTCCGTTGGCACATCATATATGCGGCACAAATTCAAAAATAGCAAAAATG
ATGAACAAAAAAAATGATCTGTCCAGATCATTATTTCCAAGTTTTCTGAT
CAACTCGGGCGATCAGAAATCCAGATCATTTTTTTTTCGATCAAAAAAGG
CGCAAAAATGACACATATGAAGCCGGATGTGACACCTAGATCATTATTAA
TCAAAAATAATCTGGCGAAAATGACACATAATAAGTAGCCTTAGGCCCTG
TATTAACGACAATCAGGAAATCAAAATTGGAAAGAATCAAATTCAAAATT
GGTCTCTGATTGGTCGATGCTCTCAAGACCTACCGACGACAATTTTGATT
TCTTGGACATCACCGGCAGACCAAAGAAGTCCAAAAAGACTTAATTGCCA
GAAAATTAAAATCAAAATTGGGGGTCTGAACCCGATCGAAGGCTTTCTGA
ACGATGTGGCTCGCGCACCACACCACGACAGACAAGCAGACAGAGGCACA
GGGCACGCCGAAGCAACCCACGCAACACAGAGAGAGAGAAAGGTGTGCCG
TCGCCTCAGGCATGTCAAAACCAGCACCACACCTAGAGCAGAAGAAAGAC
ATATAGACTCGCATGATGAGGCACCAGACAACACCTAGAGCAGGACAACG
ACAGCCAAACAACAAACAACAAGCAGACAGCCAGACGCGTACAGCAGTCT
CGAGTCCATGATGAGCCAACAGACGCAAACAAACCGACAGACACACAAAC
AACGCGGTGTCTCTCAGCGACGTAGCATCAGCGTGCAGTGCTGCTCTGAT
ACATGTATCTGCACTGCTGCTGCTCTTGTTGTTATGTTTACAGCAGTGCC
GATCGATGGTGACATCATAATCAATCAGAGGTTTTGGATCTCGGCAGCGT
TTACAGGCCTCTACCAAGCTGGTCCGTTAATATAGTTCGCAGTGTTTTTC
GTAAAATCAAACTTTGATTTTGTTATTTTGATTTTTCAATTTTGATTTCC
TGATTGTCGTTAACACAGGGCCTAACCATGTACTTCGAAGTACTTCGTGC
ATCGAGCCAGGGCCCAGGGCCATGACAGACCAAGGCAAACGCAAACCAGG
GCGATGGTCCAGTGACTACATGATCAACAGACGAAAGACTAAAAATGAAA
TAAAAAAGAAGAAGACACAGGGAGGGCACAAAGACTGAGGGAGTGCATTC
GTAGACAAACACAACAAAGAGGCCGCCAAACAAAGAGGAAGCACGTGTGA
AATACGAAGTACTTCGTTCAAGCACACAACGAAATTCAGCAATTAAAATC
ACGAAATCACCGATTTGCCACCCAGCCTCAGGCACACCTTGCAAACAACA
GCAGCAATCATCACAATGTACCGCAAGCAATATCCAATCGATCCGCCGAC
CTTGCGCCGATCGATTTATTGTTCACTTGTTTTTGAGACTGGTCGTTGAG
CCGGTTCCAGAAGACGGGCACGTACAGCAGCAGCAGCAGCAGCAGCGGCA
GCGAGGCAGTTTTTGGCGCTGAGACCGGTTTGCATTTTCGCTCGTTGTAT
TATACTTCGAAGTATGAGATGTTCAGCAGTACTAATTATCTCACGAGTGA
AGCCGCAGCGAAGACAAAGCCATCTCCAGTGGGTTGTGCATGTGGTGTTC
CTCCTGTGATGATTGTGTGGAACCTCTCAAGGCGTCTGTAGGTTCGGAAA
AAAGCTGATCAACGATGTCGAACACATGCGAGCAACGGAACATCAAAAGA
CCTGCCGCTGCTCCGCGCAGCAGTTCTTTTCCGCCTTGGCACTGATTTGC
TTCTGTGTTTCGTTCGCCATTCTCGAGCGGATGGAGCCACATCAGTGATA
GAGGGACTTGTCGCGAGCTGCGTCGATGGCCACTCTCGTGTGGCGATCGT
TTGGGATAAAACATCGTCCTCAAAAAAAATTACGAAGTATTGCTTTTGTC
TGCACGAAGCTGTCATCTCTTCTACCTGCAGTCCTCGCGGCTTCGTCTCT
AACTAACGTTACGACCACCTCGAAAGTACTTGCTATGGAAAAGACCGATG
ATACAGTAATCTTTGTGGGAGCTCTAGTTCTTGGAACCCATGGGTATTAC
GAGAGGAATCGGAAAAGGAATTCCAACTGGAAAATAAAGTCTGCTTCTGT
ATAGTCTTGTGGGGCTGTTTCAGCTAGAAATGGCCAGAAATTTACGATGC
GACCATTTCCAACCGAGTCTATCGGAACCCATCGATGTGATTCAACCATC
AAACATGATGAATTCCAGGTTGAAGAAAAAAGAAAACGAGCGTGCGCAGT
GGTCAACAGCCCGCACGAGGCACGAGTAGACACACGCATGCACATCAACA
CACGGAGCCATGTCTTGCAGATACTCCAGCCACGTACGATCCTGGCCGTG
CTGAACGATCACGCTTCCGCGCTTGCACGCACGTTCAGTCAGTATCTCCT
TGAATTTTGGATAAACCGCCTGCTGACCCATCTGACGACCCCCCTGATTT
CCCATATTTCCATTTTTCCGGATTTCCCGTGCATAGCTTGACCCGAGCCC
GAAACGTCCGGGTTCTGAAAATCAGCCATATCCCAACTTGAGGAATTCCA
AGTTTTGAATCTACCGTTAAAGCAGACCCAAAAGTGTGTACAGTATGTGG
ACACTTGTACTGAGAGATAATGCCGTTTCGTGGCAACTACTGCTGTGGCA
TTGCTGTATAACCATCGTCTTTGGACTCCTCCCGGGCACAGTAACATGTC
CCTTCGCGACGAAGTTTTGCGGCATTCGTGATTCTCTGTCCCCCCTCTCT
CTTCCGCCCTGCCGTAGTTTTTTGACTGGTCCGTTCGCTACCTTACTGTA
GCCAATGTTGCTTCCAAATATTTTTCCGGGACAAGCCACCACAGGCGGAG
CGCGTTAAGGGAATCTGTGCGTAGGTTTAGGAACTGAGGCCGGTCTCAGT
GTAGCTAGCTGGTCGGCAGCTAGGAAACCTCTTCATGGGACATCAATGAA
AACTGTTCAATCTGTCTGGACACTACACAACCCTGTTCATACGACATCAA
TGAAAGCTGTCCAATCTGTCTGGATACTACACACTAGTATACTCTCGCTC
CTGCCACGGTACGCACATGCAGTAGCTGCAACGTCGAGCTCTACTGTTCA
TATGGACGAAGCCCTTTTTTTTCCTGAGATTATTGCAGCTTCCTCACTCA
CTCGTCTCCCTCAATTGTTCTACCTCTCAACGTCCTCTCTCTTACTCTCT
CGTTCTGTCTCCGTCTAGACTCTCTCTCGACTTCCTCTCAAATTTCTCGC
TCTCTCTCAACTGTATTTTTTCCATCTCTATGTCTCTCCTTCTCTCTCTT
TCTCTCTCTCCTCCTCTCTCACTCTATTAGTCTTCCTCTCTCTCTCCATA
TCTCTCTCTCCGTCCCCCTCTCCCTTTCTTTTCCTCTCCGCTCTCTACTT
CTCTCTGTCTCTCTCTCCTTCTCTCTCTTCGCTCTCTCCCTCTCTGTAAC
GCTCTCTCTATCTGTTCCTCTTTGAGCGGTATGTGCACCTTCACTCCCCA
ATTCTACATGCAGCCCTGGAGTGCTCACACCAAACAATACCATATCAGCT
ACCTGTCGACAACATGGCAGGCGTGACGGGCAGCTCAGACTCGTACATTA
CTTTCGCTGCCTTCCCCATGATTTCTTTGTTGTACTTCCTCTCATCATGT
ATCGTGTGTCTAATTTGCCACCCTCCGCCCACCCTCCCACCTCTCCGCCC
TACACATGCGTATCACTACATACACGGCGCTCGGCTCACAAACGCACATA
CTTATGGTGGTGTGATATACATCGGGAAAAACAAGGGCATGAAGGAGTTC
ATGGAGGGCCCCGTCCACGCCCTCAGGCGCGCCCTCCTCCCCCTCGACTG
CTGCGGTGAAAATCGTGGAGGAGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig639:129897..136880+

>mRNA_P-littoralis_Contig639.31.1 ID=mRNA_P-littoralis_Contig639.31.1|Name=mRNA_P-littoralis_Contig639.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig639:129897..136880+ (Pylaiella littoralis U1_48)
ATGGCATGGAGACACCATCCTCGACAACATCTGATGATACACCAGCGACG
AGCTCGCCAAACAACCTCAAACTTTCCTGCGTCCACTGCAGCAAGACCTT
GTTATCGTGCCGGTGGCGGAGCCGGTGCTACTCGTAACCTTACCGATTCG
ATGAAGCGTGTCCGTGAACCCTTTGCCCAAGCCGGCTCCCGGAACTCGCT
GCCGCTCCCACCTGCATCCGGCGGGAAGCGAGTCAGGCCAGAGGTGCAAC
AACAACAACTCTACCATGATCATCGGAGCAGGACCGCTACCCAAGAACAG
CAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGCCCCTTCCAAGCGCTCCT
AGCCGAGCACGGGGTGGTGTGGCCCTCGGCTGGGGGTTTGGAAGGAGATT
CGGAGACCGAGAGGCGGTCTTCTCTGGGGTTCTCTTGCCGCAGGAACCCG
TCCAAGCTGCGCGTTGGGCTGAAGAGAGCGCTGGTGCATGACCGCGCTCG
GAGAGGCGAATTCGTTGAGGGCATGAAGGAGTTCATGGAGGGCCCCGTCC
ACGCCCTCAGGCGCGCCCTCCTCCCCCTCGACTGCTGCGGTGAAAATCGT
GGAGGAGGCGGCGGCGGC
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