mRNA_P-littoralis_Contig639.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig639.14.1
Unique NamemRNA_P-littoralis_Contig639.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig639.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig639contigP-littoralis_Contig639:37423..40053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size260
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.8194158-UTR-P-littoralis_Contig639:37422..374911680791328.8194158-UTR-P-littoralis_Contig639:37422..37491Pylaiella littoralis U1_48UTRP-littoralis_Contig639 37423..37491 -
1680791328.85462-UTR-P-littoralis_Contig639:40048..400531680791328.85462-UTR-P-littoralis_Contig639:40048..40053Pylaiella littoralis U1_48UTRP-littoralis_Contig639 40049..40053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.8317995-CDS-P-littoralis_Contig639:37491..375051680791328.8317995-CDS-P-littoralis_Contig639:37491..37505Pylaiella littoralis U1_48CDSP-littoralis_Contig639 37492..37505 -
1680791328.8447447-CDS-P-littoralis_Contig639:39876..400481680791328.8447447-CDS-P-littoralis_Contig639:39876..40048Pylaiella littoralis U1_48CDSP-littoralis_Contig639 39877..40048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig639.14.1prot_P-littoralis_Contig639.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig639 37492..40048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig639.14.1

>prot_P-littoralis_Contig639.14.1 ID=prot_P-littoralis_Contig639.14.1|Name=mRNA_P-littoralis_Contig639.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MEGGRPGSCVKLTSCQSCSHNGVMSGSGGRRGEPVRVYEGPAQQLFTCHM
CKRQKNKGSDG*
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mRNA from alignment at P-littoralis_Contig639:37423..40053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig639.14.1 ID=mRNA_P-littoralis_Contig639.14.1|Name=mRNA_P-littoralis_Contig639.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2631bp|location=Sequence derived from alignment at P-littoralis_Contig639:37423..40053- (Pylaiella littoralis U1_48)
ACGAAATGGAGGGAGGGCGGCCGGGTAGCTGCGTGAAGCTTACGAGTTGC
CAGAGCTGTTCTCACAACGGGGTCATGTCCGGATCGGGAGGCCGTCGCGG
GGAACCTGTTCGTGTTTACGAAGGACCCGCCCAGCAGCTGTTTACATGTC
ACATGTGCAAGCGCCAGAAAAACAAGGGTGAGTACCGGATTGCCCATAGC
AGCGAACAAAATCCTCGCGGATGGGACCATTTTTGCTTGGAGTGTTCAAG
ATCAGAGCAGGCCCTCGAGCGGAGAGGGTACTGGGGTAGTCATGGTACTC
TGGACAGTGCACCCGTAGTCAGAGCCCCCACCGAGATAGACGGGCCTGGT
GGAGGCGTACAGCCTACGAGTCCAGTAGTACAGCCATCTGCAGCTTCTGT
AGGTGGGTGTTCTACAACCGGCGTTGGCCCAATTTATTCGAGAGGTGCCG
GCTGTTGCAACAATAGTAGCAGCAACAGCAGCAGCAGCGCTGCGGCCGCC
CCCCGCGTGTCATCGGCGTACGAATCCTTGGAATGCAGCACAGAAGGAGA
GCATGACGAGGGAGGGCGGGTAGAGGATGATGAGGGAGAGCCCGAGGAGG
GAGAGGCGAAGGCAGATGATCCGCATCGTTGGAACAACCGTGGGCTTCAA
GATGCATTGGTTCGTTGAGGGAGGCCGGTGACACGGCACCTTCCGACTGT
TGCCGTTGACGGCAGGCTGCGTCCGCCGGGTACACGAGGTGGGGACGCGG
CCGTTCTTCCTCCCCCCAGGATTGTAGCTGCACAATTTAGGGCGCGCTTC
CCTGGGGCACCTTTCTGTAGACCTGTAGAGAGCGTCGAGGTTCGCGCGCT
TGCCGCGATGCGCCCGAGTTCAGCGACGGCGGCAATGAAGAAAAGGGCAA
AAAAAGGTGATGAGGTGATGGACATGGAGATGCTCGACGACCTGCTTCGA
GAGGCGGCGATGGCCGTGTTTGCTACGATTCATGTGGTCGTCAGATGTAC
TTGCTCGAGGTTGTTTTCTTCGAGGACCTGGTCAATGTTGGAAAATCGTG
TACGAAGGCTCATGTGTTGTAGTACGTCGAGGTTGACGAACAGAACCCTG
TCTGGCAGGGCGCTGTGCAGAGGTTAAGCGTATGGCGGTTAAGCCACTGC
ACGAGCCCGAAGGAGAAGATGTTGTTTAATATCACGTGAGTCATAGCTAC
ACTGGGACTTAATAAATGCCTTTTCGGTGGCTCCGGAGTCCTGGCTCAGT
CTACAGTTAAGTAAGAAAGGTTGAAGGGGGAGAGGAAAAGGTGGGTGTTG
GGAGTTGGGAGTTGGGAGTGAGCCCATGTGGGCTCGACACACCTCGACAC
ACTTCGTGCTCTCGCTAAAAGTTAATACACTCCACTCATCTATGCATCAG
CGGCATAACTTAATTACAGCGAACCAATCACTCCAATGCCGTATGTATCC
AGATGTATGAGTTCACTCTTGTACATCAAACTATGTATCACTGCCCTCAG
CAACAATACTGTAGTTTATACTTAATGTACACGTCCTACAGTATACTTGC
ACATATGTAGGTCGTGTTACTGTATTTCAACACGCCCCCTTGATGGGTGC
ACATGTTACACGCTTCAACACACTTGATGTTCTTACTACTGTACAAATCT
TACAGCTCTACCCGAACAGCTTGTGTGCTAATGCAATTCGACACGCCCCC
ATGATGGATGTGCGTGCTACTTTGTACTTCAACAACTGCCCCTCCAGTTG
TTATTAACTTTGTGTTGCCCTTAATTCTTATGTCCTTGATTTGATCAACA
AGACATCACTGTGTTCGCCTCTCCCCAGACGAGGATCCAGCAAGATTAGC
AACGAACACAGTGAGTAACACATCTACTTGTGTTTCTATAACTCAAAAGG
ACTTAAGAACTAAGGGCAACATAAAGTTAATAACAACTGGAGGGGCAGTT
GTTGAAGTACAAAGTAGCACGCACATCCATCATGGGGGCGTGCCGAATTG
CAGTAGCACACAAGCTGTTCGGGTAGCGCTGTAAGATTTGTACAGTAGTA
AGAACATCAAGTGTGTTGAAGCGTGTAACATGTGCACCCATCAAGGGGGC
GTGTTGAAATACAGTAACACGACCTACATATGTGCAAGTATACTGTAGGA
CGTGTACATTAAGTATAAACTACAGTATTGTTGCTGAGGGCATAATTGCA
TGCATACAAGTGTGTTGTCATCCCATTAATTGGACGCCACTCTACTCTTC
CGGGTAGGTAGACGCTCCAACCGGGGTCACAAAGTAGGCAGTCAACACAG
GAGTGTTTTCTTTTATTTATTTTTCTTTTCTTTCTCCACTTCCCACTGCG
GTACTTGCCTTCATTTTTTCTCGCGATAAAGGGTACAGCCATCCTTTTCC
CTCGTCGACACTTCGGATTTTGTTTACTCACGAATTGATCATTTTCCACC
GTCACGCATGTCATGAGAAGAATTCCGGATCGTGTTACTTTAGTAATAGT
CCCACACGCCCTCATCCCGCCCTCCCGCCCCAATTGCACGTGCTACAGGA
AGTGATGGCTAGGCAAAAAAGCAGGGCACAGTCTGGCGACAACGTCAACT
ACGTTCTTGCGCGGACGGTGCGGAGCAATCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig639:37423..40053-

>mRNA_P-littoralis_Contig639.14.1 ID=mRNA_P-littoralis_Contig639.14.1|Name=mRNA_P-littoralis_Contig639.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig639:37423..40053- (Pylaiella littoralis U1_48)
ATGGAGGGAGGGCGGCCGGGTAGCTGCGTGAAGCTTACGAGTTGCCAGAG
CTGTTCTCACAACGGGGTCATGTCCGGATCGGGAGGCCGTCGCGGGGAAC
CTGTTCGTGTTTACGAAGGACCCGCCCAGCAGCTGTTTACATGTCACATG
TGCAAGCGCCAGAAAAACAAGGGAAGTGATGGCTAG
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