mRNA_P-littoralis_Contig632.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig632.17.1
Unique NamemRNA_P-littoralis_Contig632.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.870e-8
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   10 EYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDV 129
            +YR RLFEKTG  MTADGS D+ INLEGV G  +FMD DV
Sbjct: 1763 QYRSRLFEKTGTGMTADGSGDERINLEGVSGPLNFMDADV 1802
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BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5KIH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.260e-7
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEKTGLAMTADGS DD I  EGV G ++FMD
Sbjct:  253 YRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMD 288
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JAM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-6
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEKTGLAMTADGS DD I  EGV G ++FMD
Sbjct:  428 YRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMD 463
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JLC5_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-6
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEKTGLAMTADGS DD I  EGV G ++FMD
Sbjct:  417 YRHRLFEKTGLAMTADGSLDDRITPEGVVGAYNFMD 452
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5K5D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.330e-6
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEKTGLAM ADGS DD I  EGV G ++FMD
Sbjct:   59 YRHRLFEKTGLAMMADGSLDDRITPEGVVGAYNFMD 94
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JW14_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW14_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.520e-6
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEKTGL MTADGS DD I  EGV G ++FMD
Sbjct:  255 YRHRLFEKTGLTMTADGSLDDRITPEGVVGAYNFMD 290
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5K5A6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.750e-6
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   10 EYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMD 126
            +YR RLFEKTG  MTADGS DD INLEG+   +SFMDM+
Sbjct:  245 QYRFRLFEKTGCGMTADGSGDDKINLEGLS-TYSFMDME 282
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JKI0_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.980e-6
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEK GLAMTADGS DD I  EGV G ++FMD
Sbjct:  458 YRHRLFEKAGLAMTADGSLDDRITPEGVVGAYNFMD 493
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5KER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.070e-6
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR RLFEK GLAMTADGS DD I  EGV G ++FMD
Sbjct:  498 YRHRLFEKAGLAMTADGSLDDRITPEGVVGAYNFMD 533
[Close]
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-5
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   13 YRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMD 120
            YR  LFEKTGLAMTADGS DD +  EGV G ++FMD
Sbjct:  696 YRHGLFEKTGLAMTADGSLDDRVTPEGVVGAYNFMD 731
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig632.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE6.870e-870.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIH7_9PHAE9.260e-775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAM5_9PHAE1.060e-675.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JLC5_9PHAE1.070e-675.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K5D4_9PHAE1.330e-672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW14_9PHAE3.520e-672.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5A6_9PHAE3.750e-669.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JKI0_9PHAE4.980e-672.22HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KER2_9PHAE5.070e-672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ9_9PHAE1.300e-569.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig632contigP-littoralis_Contig632:57410..57721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size313
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.54e-05
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791319.2811131-CDS-P-littoralis_Contig632:57409..577211680791319.2811131-CDS-P-littoralis_Contig632:57409..57721Pylaiella littoralis U1_48CDSP-littoralis_Contig632 57410..57721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig632.17.1prot_P-littoralis_Contig632.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig632 57410..57721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig632.17.1

>prot_P-littoralis_Contig632.17.1 ID=prot_P-littoralis_Contig632.17.1|Name=mRNA_P-littoralis_Contig632.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MGVEYRRRLFEKTGLAMTADGSDDDLINLEGVEGVFSFMDMDVTPEPLED
VLPVPPAPADEEHPGGSSDEDDDSDGEEGGGGGTHDDLATIDIDDDLDKG
EEPL
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mRNA from alignment at P-littoralis_Contig632:57410..57721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig632.17.1 ID=mRNA_P-littoralis_Contig632.17.1|Name=mRNA_P-littoralis_Contig632.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig632:57410..57721+ (Pylaiella littoralis U1_48)
ATGGGCGTCGAGTACCGCCGTCGCCTTTTCGAGAAGACTGGCTTGGCGAT
GACCGCTGACGGCAGCGATGACGACCTCATCAACCTCGAAGGTGTCGAGG
GCGTGTTCTCCTTCATGGACATGGACGTCACCCCGGAGCCGCTGGAGGAT
GTGCTTCCGGTGCCACCTGCTCCTGCCGACGAGGAACACCCCGGCGGTTC
AAGCGACGAGGACGACGATTCGGATGGGGAGGAGGGGGGTGGAGGCGGTA
CGCACGACGACCTGGCGACGATAGACATCGACGATGATCTCGACAAAGGC
GAGGAGCCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig632:57410..57721+

>mRNA_P-littoralis_Contig632.17.1 ID=mRNA_P-littoralis_Contig632.17.1|Name=mRNA_P-littoralis_Contig632.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig632:57410..57721+ (Pylaiella littoralis U1_48)
ATGGGCGTCGAGTACCGCCGTCGCCTTTTCGAGAAGACTGGCTTGGCGAT
GACCGCTGACGGCAGCGATGACGACCTCATCAACCTCGAAGGTGTCGAGG
GCGTGTTCTCCTTCATGGACATGGACGTCACCCCGGAGCCGCTGGAGGAT
GTGCTTCCGGTGCCACCTGCTCCTGCCGACGAGGAACACCCCGGCGGTTC
AAGCGACGAGGACGACGATTCGGATGGGGAGGAGGGGGGTGGAGGCGGTA
CGCACGACGACCTGGCGACGATAGACATCGACGATGATCTCGACAAAGGC
GAGGAGCCCTTG
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