mRNA_P-littoralis_Contig631.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.53.1
Unique NamemRNA_P-littoralis_Contig631.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:167161..167661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size501
Hectar predicted targeting categorysignal anchor
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.5998876-UTR-P-littoralis_Contig631:167160..1671641680791317.5998876-UTR-P-littoralis_Contig631:167160..167164Pylaiella littoralis U1_48UTRP-littoralis_Contig631 167161..167164 -
1680791317.6278508-UTR-P-littoralis_Contig631:167503..1676611680791317.6278508-UTR-P-littoralis_Contig631:167503..167661Pylaiella littoralis U1_48UTRP-littoralis_Contig631 167504..167661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.6139212-CDS-P-littoralis_Contig631:167164..1675031680791317.6139212-CDS-P-littoralis_Contig631:167164..167503Pylaiella littoralis U1_48CDSP-littoralis_Contig631 167165..167503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.53.1prot_P-littoralis_Contig631.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 167165..167503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.53.1

>prot_P-littoralis_Contig631.53.1 ID=prot_P-littoralis_Contig631.53.1|Name=mRNA_P-littoralis_Contig631.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MGTSCNCCTLYTCARPTYSFIYRYGACTRVIYSRWCRGRVLCMGYLVLGS
WCYCYTAVHIYRVVSLFISHWYCACTVLFLCCCFSPPPRCFFFVHGPCTG
CWFVSVIIMCGM*
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mRNA from alignment at P-littoralis_Contig631:167161..167661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.53.1 ID=mRNA_P-littoralis_Contig631.53.1|Name=mRNA_P-littoralis_Contig631.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig631:167161..167661- (Pylaiella littoralis U1_48)
GTGGGGAGCGTGCATCACTTTTTTTATTCGTGCTATTGCCGTGTGTTATT
CTGTTATTTTGTGCGGGATATCTAGTTACTTGGCACGCGGTGTCATTCCA
CTTTTTTATCAGTACGGCGCATGCATCATTTCTTATTTTGTGTCGACGTA
TCTAGTTGATGGGCACATCGTGCAACTGCTGCACTCTGTACACGTGTGCA
CGTCCCACTTACAGTTTTATTTACCGGTACGGCGCCTGCACCAGGGTAAT
TTATTCTCGTTGGTGTCGTGGCCGTGTTTTGTGTATGGGATATCTAGTGC
TTGGTTCGTGGTGCTACTGCTACACTGCTGTGCACATATACCGTGTCGTT
TCGCTTTTTATTAGTCATTGGTACTGCGCATGCACCGTGTTGTTTTTGTG
CTGTTGCTTCAGCCCCCCCCCCCGCTGTTTTTTTTTTGTTCATGGTCCGT
GCACCGGTTGTTGGTTTGTGTCAGTTATTATTATGTGCGGGATGTAGGTG
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:167161..167661-

>mRNA_P-littoralis_Contig631.53.1 ID=mRNA_P-littoralis_Contig631.53.1|Name=mRNA_P-littoralis_Contig631.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig631:167161..167661- (Pylaiella littoralis U1_48)
ATGGGCACATCGTGCAACTGCTGCACTCTGTACACGTGTGCACGTCCCAC
TTACAGTTTTATTTACCGGTACGGCGCCTGCACCAGGGTAATTTATTCTC
GTTGGTGTCGTGGCCGTGTTTTGTGTATGGGATATCTAGTGCTTGGTTCG
TGGTGCTACTGCTACACTGCTGTGCACATATACCGTGTCGTTTCGCTTTT
TATTAGTCATTGGTACTGCGCATGCACCGTGTTGTTTTTGTGCTGTTGCT
TCAGCCCCCCCCCCCGCTGTTTTTTTTTTGTTCATGGTCCGTGCACCGGT
TGTTGGTTTGTGTCAGTTATTATTATGTGCGGGATGTAG
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