mRNA_P-littoralis_Contig631.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.42.1
Unique NamemRNA_P-littoralis_Contig631.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.42.1 vs. uniprot
Match: D7G3R9_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.600e-15
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   16 GDEDDEAR-KVGSESDVLDFVEARVKSSLAALA-THSGDDATSLGDDAKPHDTDAGSETVFSDQATKPLSPSSSRDGATTGFKKRWVDPDWSDDD 294
            G+EDDEA  KVGS SDVLDF+E RV SSLA LA T +GDDAT+  D AKP+D D GSE+VFSD  T P SP+S     T       +   WSD D
Sbjct:  556 GNEDDEATTKVGSASDVLDFIEERVDSSLAELAATRTGDDATTTRDGAKPNDIDVGSESVFSDSTTAPPSPASPPALVTHAPIPEHIIATWSDAD 650
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BLAST of mRNA_P-littoralis_Contig631.42.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.880e-9
Identity = 41/76 (53.95%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   40 KVGSESDVLDFVEARVKSSLAALA-THSGDDATSLGDDA------KPHDTDAGSETVFSDQATKPLSPSSSRDGAT 246
            +VGSESDV+D+VE R+  SLA LA  H GDD TS GDD       KP + D G +T FSD  T P S SSSR   T
Sbjct:   75 RVGSESDVVDYVEERINLSLAELAINHDGDDPTSTGDDVTTGDDVKPPNIDIGCDTEFSDSTTAPPSLSSSRGDVT 150
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BLAST of mRNA_P-littoralis_Contig631.42.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.590e-7
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   16 GDEDDEARKVGSESDVLDFVEARVKSSLAALATHSGDDATSLGD------------DAKPHDTDAGSET--VFSDQATKPLSPSSSRDGATTGFKKRWVDPD--------WSDDD 294
            G +DDEA +VGSESDVLDF+E R+  SLA LAT +GDD T                 +KP+D D  S+T  VF++  T+P S           + + W DP         W++DD
Sbjct:  171 GKDDDEATQVGSESDVLDFIEERINMSLAELATRTGDDPTXXXXXXXXXXXNVKVCSSKPYDYDYDSDTNVVFTNSTTEPHS---------LPWPRTWPDPTHGSTRGCTWAEDD 276
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BLAST of mRNA_P-littoralis_Contig631.42.1 vs. uniprot
Match: D7FUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.510e-6
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   22 EDDEARKVGSESDVLDFVEARVKSSLAALATHSGDD 129
            EDD A +VGSESDV+DFVEAR+K SLA LAT +GDD
Sbjct:    5 EDDGAHRVGSESDVVDFVEARIKLSLAELATGTGDD 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3R9_ECTSI3.600e-1556.84Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
D7FZA9_ECTSI5.880e-953.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L612_9PHAE2.590e-738.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC5_ECTSI1.510e-675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:144322..144769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3R9
PFAMsAAA_34,Helicase_C_4,Transposase_24
Model size296
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.9e-16
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.6520975-CDS-P-littoralis_Contig631:144321..1444771680791318.6520975-CDS-P-littoralis_Contig631:144321..144477Pylaiella littoralis U1_48CDSP-littoralis_Contig631 144322..144477 +
1680791318.6634758-CDS-P-littoralis_Contig631:144631..1447691680791318.6634758-CDS-P-littoralis_Contig631:144631..144769Pylaiella littoralis U1_48CDSP-littoralis_Contig631 144632..144769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.42.1prot_P-littoralis_Contig631.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 144322..144769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.42.1

>prot_P-littoralis_Contig631.42.1 ID=prot_P-littoralis_Contig631.42.1|Name=mRNA_P-littoralis_Contig631.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MFYQAGDEDDEARKVGSESDVLDFVEARVKSSLAALATHSGDDATSLGDD
AKPHDTDAGSETVFSDQATKPLSPSSSRDGATTGFKKRWVDPDWSDDD
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mRNA from alignment at P-littoralis_Contig631:144322..144769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.42.1 ID=mRNA_P-littoralis_Contig631.42.1|Name=mRNA_P-littoralis_Contig631.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=448bp|location=Sequence derived from alignment at P-littoralis_Contig631:144322..144769+ (Pylaiella littoralis U1_48)
ATGTTTTATCAGGCAGGCGATGAGGACGATGAAGCCCGCAAAGTCGGGAG
CGAGAGCGACGTGCTGGACTTTGTCGAGGCCCGTGTCAAGAGTTCCCTGG
CGGCACTTGCCACCCACTCCGGTGATGACGCCACCAGCTTGGGAGACGAC
GCCAAGGTGTGTGTTTAGGATGCTGTGTCGCCTGTGGGCCGTATTATGCA
TTGTTTGTGGAGTACCAAAGCTAAGCAATACTGAAACGCTAAAACGCTGA
AACACACGCTTGTCTCCCTCTCTTTTCTCGTGTATTTTGGCTTCGTTCTT
TCTTGCGAAGCCGCACGACACCGATGCCGGTAGCGAGACCGTCTTCTCCG
ACCAGGCCACCAAGCCCCTCAGCCCCAGCTCATCACGGGATGGGGCGACC
ACCGGGTTCAAGAAGCGATGGGTAGATCCCGATTGGTCGGACGATGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:144322..144769+

>mRNA_P-littoralis_Contig631.42.1 ID=mRNA_P-littoralis_Contig631.42.1|Name=mRNA_P-littoralis_Contig631.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig631:144322..144769+ (Pylaiella littoralis U1_48)
ATGTTTTATCAGGCAGGCGATGAGGACGATGAAGCCCGCAAAGTCGGGAG
CGAGAGCGACGTGCTGGACTTTGTCGAGGCCCGTGTCAAGAGTTCCCTGG
CGGCACTTGCCACCCACTCCGGTGATGACGCCACCAGCTTGGGAGACGAC
GCCAAGCCGCACGACACCGATGCCGGTAGCGAGACCGTCTTCTCCGACCA
GGCCACCAAGCCCCTCAGCCCCAGCTCATCACGGGATGGGGCGACCACCG
GGTTCAAGAAGCGATGGGTAGATCCCGATTGGTCGGACGATGAC
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