mRNA_P-littoralis_Contig631.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.26.1
Unique NamemRNA_P-littoralis_Contig631.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig631.26.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 130 bits (326), Expect = 4.150e-33
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:    1 SRLKKAATRSR-PSVWCELLQLQARRLILKVGLGRDLVPRDLPTAKNPNRLCETLTSMLKAPCVRGWKVTKSISEGSFGHVFRALRNDGTRAVIKVRLVPRRK*RAKPLLKRITTVRVLPP---RY*GKKPTEKIGTRATE 411
            ++ KKAA R + P VWC+L Q++ARRLILKV LGRD+ P D+ TAKNPNRLCETLT ML   C+RGW+VTK +S G++GHVFRA+  +GT A +KV+    ++ R +   +R    R L P   RY   KP  ++G  A E
Sbjct:    2 AKAKKAAPRPKQPKVWCDLSQIEARRLILKVALGRDIGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHE 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K4.150e-3351.06EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:59971..60592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size622
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.029699-CDS-P-littoralis_Contig631:59970..602791680791318.029699-CDS-P-littoralis_Contig631:59970..60279Pylaiella littoralis U1_48CDSP-littoralis_Contig631 59971..60279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791318.0440023-UTR-P-littoralis_Contig631:60279..605921680791318.0440023-UTR-P-littoralis_Contig631:60279..60592Pylaiella littoralis U1_48UTRP-littoralis_Contig631 60280..60592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.26.1prot_P-littoralis_Contig631.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 59971..60279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.26.1

>prot_P-littoralis_Contig631.26.1 ID=prot_P-littoralis_Contig631.26.1|Name=mRNA_P-littoralis_Contig631.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
SRLKKAATRSRPSVWCELLQLQARRLILKVGLGRDLVPRDLPTAKNPNRL
CETLTSMLKAPCVRGWKVTKSISEGSFGHVFRALRNDGTRAVIKVRLVPR
RK*
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mRNA from alignment at P-littoralis_Contig631:59971..60592+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.26.1 ID=mRNA_P-littoralis_Contig631.26.1|Name=mRNA_P-littoralis_Contig631.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=622bp|location=Sequence derived from alignment at P-littoralis_Contig631:59971..60592+ (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGCAGCGACTCGCTCACGGCCAAGTGTGTGGTGCGA
GCTGTTGCAACTCCAGGCTCGTCGTCTGATTCTCAAGGTGGGGCTTGGTC
GCGATCTCGTGCCTCGAGACCTACCCACCGCGAAAAACCCCAACAGGCTG
TGTGAAACGCTGACGAGCATGCTCAAAGCTCCATGTGTCAGAGGCTGGAA
GGTTACGAAATCCATCTCCGAGGGATCGTTCGGCCACGTCTTCCGCGCGC
TGAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGATTGGTTCCGCGA
AGGAAATAAAGGGCGAAGCCGTTGCTCAAAAGAATTACCACGGTAAGGGT
CTTGCCCCCAAGATACTAGGGTAAAAAACCGACTGAGAAAATCGGCACAC
GAGCGACTGAAATACCTCGAATACGATGATGACGACATAGAGTATCACCC
CCGGGGCCATTTGGTCCACATCATCGTGATGGAGGAGATTGCTGGCGTTA
TCGGTGACTGGCTACATCCCCAAAGTCAAAAGAACAGCTCGGACAGCGTA
CGTACGTTCAGCATTTTTTATCTAATGGATTCTTACAGAAGGCACAAACT
GACACATGCCGATCTACACGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:59971..60592+

>mRNA_P-littoralis_Contig631.26.1 ID=mRNA_P-littoralis_Contig631.26.1|Name=mRNA_P-littoralis_Contig631.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig631:59971..60592+ (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGCAGCGACTCGCTCACGGCCAAGTGTGTGGTGCGA
GCTGTTGCAACTCCAGGCTCGTCGTCTGATTCTCAAGGTGGGGCTTGGTC
GCGATCTCGTGCCTCGAGACCTACCCACCGCGAAAAACCCCAACAGGCTG
TGTGAAACGCTGACGAGCATGCTCAAAGCTCCATGTGTCAGAGGCTGGAA
GGTTACGAAATCCATCTCCGAGGGATCGTTCGGCCACGTCTTCCGCGCGC
TGAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGATTGGTTCCGCGA
AGGAAATAA
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