mRNA_P-littoralis_Contig631.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.13.1
Unique NamemRNA_P-littoralis_Contig631.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.650e-65
Identity = 105/145 (72.41%), Postives = 119/145 (82.07%), Query Frame = 3
Query:  378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKLVYTAPP 812
            DLL  LPG DVFYKFGLKLYSL QN++FRARKGDK  R+CCSRKGWI VP++EAYD ILQILV+KT+EAV MF   I   + DHF+ H++SIL +KDS VPEQRKLYERRRNKVLNNIAV+VTDNL R+  WS KK KLVY A P
Sbjct:  127 DLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALP 271          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 210 bits (535), Expect = 1.370e-62
Identity = 104/145 (71.72%), Postives = 118/145 (81.38%), Query Frame = 3
Query:  378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKLVYTAPP 812
            DLL  LPG DVFYKFGLKLYSL QN++FRARKGDK  R+CCSRKGWI VP++EAYD ILQILV+KT+EAV MF   I   + DHF+ +++SIL  KDS VPEQRKLYERRRNKVLNNIAV+VTDNL R+  WS KK KLVY A P
Sbjct:  225 DLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALP 369          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.950e-51
Identity = 88/126 (69.84%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 MALRDRKLRVKANPSCFDLSTVLEPLRTECPNLIYLGIWYYVGSVYAYAQSAERMSDIMLTKALQDHMVITNIAPYSTPRGELQEEWRSKPVRANKAIVAKADTTAVFVHPLGKESLQHITSKFIA 378
            MALR+RKL V+AN SCFDL T+LE +RT+CP LIYLGIWY  G VY YAQ AERMSDIML KAL+ H+V T+I+ +  P  E QEEWR+KPV  NK I  KA+TTAVFVHPLGKESLQH TS FIA
Sbjct:    1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIA 126          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.660e-38
Identity = 82/131 (62.60%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSN 770
            DLLNTL G DVFYKFG+KLY LEQNV+FRARKGDK+V                                    SGV+  CHIDHFEK AESILD KDS VPEQRKLYER RNKVLNNIAVNVTDNLSRLSN
Sbjct:  102 DLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.930e-30
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
            DLL       VF+KFGLKLYSL QNV+FR RK    VR+    K WI V K+EAYD IL +LV+KT EAV M+   +S   ++HF      +L+ +DS VPE++KLYE+RRNK L+ IAV+V   LS+L  W GK+  L
Sbjct:  129 DLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTL 266          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.090e-29
Identity = 71/139 (51.08%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  378 DLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSRKGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
            DLL       VF+KFGLKLYSL QNV+FR RK    VR+    K WI V K+EAYD IL +LV+KT EAV M+   +S   ++HF      +L+ +DSPVPE++KLYE+ RNK L+ IAV+V   LS+L  W GK+  L
Sbjct: 2257 DLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKRVTL 2394          
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-6
Identity = 43/147 (29.25%), Postives = 72/147 (48.98%), Query Frame = 3
Query:  366 QVHRDLLNTLPGPDVFYKFGLKLYSLEQNVSFRARKGDKKVRLCCSR----KGWIPVPKEEAYDNILQILVDKTQEAVRMFSGVISPCHIDHFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVNVTDNLSRLSNWSGKKPKL 794
            ++ ++LL    GPDV ++FG KLY+LE+N++F+    D K      R      W+   K   +  +L+ L D  +EAV+ +   I    +++FE     I    D  + E   +Y +      N +A N+ + L R+   +GKK KL
Sbjct:  146 ELIQELLAGHHGPDVIFRFGAKLYALEENMNFKT---DVKSGFISGRLEEDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP42_ECTSI2.650e-6572.41EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN59_ESV1K1.370e-6271.72EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0V6_9PHAE1.950e-5169.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K135_9PHAE1.660e-3862.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE5.930e-3051.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE1.090e-2951.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWA4_9PHAE1.240e-629.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:28959..29770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size812
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.846913-CDS-P-littoralis_Contig631:28958..293451680791317.846913-CDS-P-littoralis_Contig631:28958..29345Pylaiella littoralis U1_48CDSP-littoralis_Contig631 28959..29345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791317.8611765-UTR-P-littoralis_Contig631:29345..297701680791317.8611765-UTR-P-littoralis_Contig631:29345..29770Pylaiella littoralis U1_48UTRP-littoralis_Contig631 29346..29770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.13.1prot_P-littoralis_Contig631.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 28959..29345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.13.1

>prot_P-littoralis_Contig631.13.1 ID=prot_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MALRDRKLRVKANPSCFDLSTVLEPLRTECPNLIYLGIWYYVGSVYAYAQ
SAERMSDIMLTKALQDHMVITNIAPYSTPRGELQEEWRSKPVRANKAIVA
KADTTAVFVHPLGKESLQHITSKFIAIC*
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mRNA from alignment at P-littoralis_Contig631:28959..29770+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.13.1 ID=mRNA_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=812bp|location=Sequence derived from alignment at P-littoralis_Contig631:28959..29770+ (Pylaiella littoralis U1_48)
ATGGCGCTGCGTGACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCTT TGACTTGAGCACCGTGTTGGAACCTCTCCGCACGGAGTGTCCGAATCTTA TCTACCTAGGAATTTGGTATTATGTCGGCTCCGTGTACGCGTACGCGCAA AGCGCGGAGCGCATGTCCGACATCATGCTTACCAAAGCGTTGCAGGACCA CATGGTCATAACCAACATCGCCCCGTACTCTACCCCTCGGGGGGAGCTGC AAGAGGAGTGGCGATCCAAGCCTGTTCGTGCAAACAAGGCCATTGTCGCC AAGGCCGACACTACCGCTGTATTCGTGCACCCTCTGGGCAAGGAGTCTCT TCAACACATCACCAGCAAGTTCATCGCGATTTGCTGAACACCCTCCCTGG ACCCGATGTCTTCTACAAATTCGGGTTAAAGCTGTACTCCTTAGAACAGA ACGTCAGCTTCCGGGCACGCAAAGGGGACAAGAAAGTCAGGTTGTGTTGT AGCCGCAAAGGATGGATCCCCGTCCCAAAGGAAGAGGCATATGACAACAT CTTGCAAATCCTAGTTGACAAGACCCAGGAAGCTGTACGCATGTTCAGCG GGGTGATCTCGCCTTGCCACATCGATCATTTCGAGAAGCACGCAGAGAGT ATCCTTGACTTCAAGGACTCCCCTGTTCCCGAGCAGAGGAAGTTGTATGA GAGAAGGAGGAACAAGGTGCTCAACAACATCGCTGTTAACGTTACCGACA ACTTGAGTCGGCTGAGTAACTGGAGCGGCAAGAAGCCCAAGCTCGTCTAC ACAGCGCCTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:28959..29770+

>mRNA_P-littoralis_Contig631.13.1 ID=mRNA_P-littoralis_Contig631.13.1|Name=mRNA_P-littoralis_Contig631.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig631:28959..29770+ (Pylaiella littoralis U1_48)
ATGGCGCTGCGTGACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCTT
TGACTTGAGCACCGTGTTGGAACCTCTCCGCACGGAGTGTCCGAATCTTA
TCTACCTAGGAATTTGGTATTATGTCGGCTCCGTGTACGCGTACGCGCAA
AGCGCGGAGCGCATGTCCGACATCATGCTTACCAAAGCGTTGCAGGACCA
CATGGTCATAACCAACATCGCCCCGTACTCTACCCCTCGGGGGGAGCTGC
AAGAGGAGTGGCGATCCAAGCCTGTTCGTGCAAACAAGGCCATTGTCGCC
AAGGCCGACACTACCGCTGTATTCGTGCACCCTCTGGGCAAGGAGTCTCT
TCAACACATCACCAGCAAGTTCATCGCGATTTGCTGA
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