mRNA_P-littoralis_Contig63.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.50.1
Unique NamemRNA_P-littoralis_Contig63.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig63.50.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 7.030e-105
Identity = 226/318 (71.07%), Postives = 241/318 (75.79%), Query Frame = 1 
Query:   49 MRRRRAPMWITFVLSFLSRKEECLGFVAGPADPTTXXXXXXXXXXXXXXXCSPLVRRRTTGVPASSXXXPSTPTPSPEERTAARIAMPFSRTALRATGFGPXXXXXXXXXXXXXXXXXXXXXXYYPREDEEXXXXDSSHPSERGGDDGGDGKPFPELGDARKVEEPRGIGTLFESEDEVIRELSSEEYLELLKDWAPIASFASVEAIDAKVKEEATCILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVEWLASGVHALCGKRLDLPVTISSRARGD 1002
            +RRRR P+ + F    L+RKE C+GFVA  A       XXXXXXXXXXXX                XX  +        RTAA  A+  SRTAL ATGFGPXXXXXXXXXXXXXXXXXXXXXX        XXXXD           G  G+PFP L DA+KVEEPRGIGTLFESEDE+IRELSSEEY  LL+DWAPIASFASVEAID KVKEEA CILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSED+GVVVEWICGNPVTLGIPGNAVEWLA G+HALCGKRLDLPVTIS +ARG+
Sbjct:    2 VRRRRIPVRLVFGFLLLTRKEGCVGFVANLAAQQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAT--------RTAAHRAI-ASRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-----------GDAGEPFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 299
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BLAST of mRNA_P-littoralis_Contig63.50.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 5.670e-57
Identity = 86/95 (90.53%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:  721 MAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVEWLASGVHALCGKRLDLPVTISSRARGDG 1005
            MAEWQPKRN+DYTK+GSKWSFGAPIGAIKGGQVDALACL+VSED+GVVVEWICGNPVTLGIPGNAVEWLA G+HALCGKRLDLPVTIS +ARG+G
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 95
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BLAST of mRNA_P-littoralis_Contig63.50.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 144 bits (364), Expect = 6.480e-38
Identity = 68/145 (46.90%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:  547 RGIGTLFESEDEVIRELSSEEYLELLKDWAPIASFASVEAIDAKVKEEATCILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVEWLASGVHALCGKRLDLPVTI 981
            + +GTLF+SEDE IREL S+E+L+ ++ WAP+++F   E  +A  +EE      VL+ MAEW+P R+  Y      W FGAP+GA KGGQ+DA+ACL++SE +GVVV +I  NP+ +G+ GNA +WL  G+  +C +RL + + I
Sbjct:   67 QALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEG-NASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDI 210
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BLAST of mRNA_P-littoralis_Contig63.50.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.560e-27
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:  721 MAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLGIPGNAVEWLASGVHALCGKRLDLPVTISSRARGD 1002
            M +W P R  D+ + GS W+F AP+ A K G +DA+ACL+V+E++G+ + W+C NP  LG+PGN++ WL  G+  L GKRLD+ V     ARG+
Sbjct:    1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARGE 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMS2_9PHAE7.030e-10571.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI60_ECTSI5.670e-5790.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4F895_VITBC6.480e-3846.90Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835Z8Z3_9STRA9.560e-2746.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:276016..278477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1017
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Cds size1017
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791312.6701138-CDS-P-littoralis_Contig63:276015..2762161680791312.6701138-CDS-P-littoralis_Contig63:276015..276216Pylaiella littoralis U1_48CDSP-littoralis_Contig63 276016..276216 -
1680791312.682056-CDS-P-littoralis_Contig63:276405..2764951680791312.682056-CDS-P-littoralis_Contig63:276405..276495Pylaiella littoralis U1_48CDSP-littoralis_Contig63 276406..276495 -
1680791312.6914887-CDS-P-littoralis_Contig63:277751..2784771680791312.6914887-CDS-P-littoralis_Contig63:277751..278477Pylaiella littoralis U1_48CDSP-littoralis_Contig63 277752..278477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.50.1prot_P-littoralis_Contig63.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 276016..278477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.50.1

>prot_P-littoralis_Contig63.50.1 ID=prot_P-littoralis_Contig63.50.1|Name=mRNA_P-littoralis_Contig63.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=339bp
RRFRVLFWLQRGQTMAMRRRRAPMWITFVLSFLSRKEECLGFVAGPADPT
TTNSHHARQQQHQQQACSPLVRRRTTGVPASSSSSPSTPTPSPEERTAAR
IAMPFSRTALRATGFGPAPAPKRPPRPRPTATPTPDPSPYYPREDEEDTD
NDSSHPSERGGDDGGDGKPFPELGDARKVEEPRGIGTLFESEDEVIRELS
SEEYLELLKDWAPIASFASVEAIDAKVKEEATCILTVLRGMAEWQPKRNA
DYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDEGVVVEWICGNPVTLG
IPGNAVEWLASGVHALCGKRLDLPVTISSRARGDGGGDG
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mRNA from alignment at P-littoralis_Contig63:276016..278477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.50.1 ID=mRNA_P-littoralis_Contig63.50.1|Name=mRNA_P-littoralis_Contig63.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2462bp|location=Sequence derived from alignment at P-littoralis_Contig63:276016..278477- (Pylaiella littoralis U1_48)
CGTCGCTTTCGGGTCCTCTTTTGGTTACAGCGTGGACAAACGATGGCAAT
GCGGCGACGGCGGGCACCCATGTGGATCACCTTCGTACTCTCGTTTCTGT
CGAGAAAGGAGGAGTGCTTGGGTTTCGTGGCAGGCCCAGCGGATCCTACA
ACAACGAACAGTCATCATGCACGGCAGCAGCAGCACCAGCAGCAGGCCTG
CTCGCCGTTGGTGCGCCGAAGAACAACAGGAGTGCCGGCATCATCATCAT
CATCACCATCAACACCAACACCATCCCCAGAAGAAAGAACAGCAGCAAGA
ATAGCAATGCCCTTCTCGAGAACAGCTCTGCGAGCTACGGGGTTTGGCCC
TGCGCCAGCCCCGAAGCGCCCGCCCCGACCCAGACCAACTGCGACCCCAA
CACCTGATCCCAGCCCATACTACCCGAGAGAGGACGAAGAAGATACCGAC
AACGATAGCAGTCACCCCTCAGAGAGAGGAGGCGACGACGGCGGCGATGG
AAAACCGTTCCCCGAGCTGGGGGACGCGAGAAAGGTGGAGGAGCCCCGCG
GGATCGGGACGTTGTTCGAGTCGGAAGACGAGGTGATCCGCGAGCTCTCG
AGCGAGGAGTACTTGGAATTGCTGAAGGACTGGGCTCCGATCGCGTCCTT
CGCGTCCGTCGAGGCCATCGACGCCAAGGTCAAGGAGGAGGCGACCTGCA
TCCTCACGGTGCTGAGAGGCATGGCGGTGAGCTCGACCTCTCTCCCTTTT
TCTCTCTCGCGGTTCTTCTACAGTAGCACTGCTGTACCCAGATTTCGGCC
GGGACAGCAACAGCGCAACAGCACAAGCAGGGTACAGCAGTAGGGGACAC
AAGATACCACACCCCCTTGACTGACTTTCACAACGGCAGTTGTCCGTGTG
GTCCTTGTATCATTGGCTCCATGTTGTAACGGAGTGTGCTAATACTATCA
ACGATGTGTTTTCGGAATGCTCTCGACAAGATATTTCGACTTTTAACGCC
GCCACGAAAATCGACACCGACTCTCGTCTCGGCGGTGTAAAGCATTCAAA
CTTTCAAAACCAGTCTGCAAGTGTGGTACGATATCTCATGTCACTAACGT
GTACTTGTATCATGGTGAAGGGGCGGAAAGTCCTGCGGACCATCCTTGTT
TGTGCATGTAGGTGCTGATAGCAAGAGATCTAGGGAGGAAGGCATCGTGC
ATCCTCACCGTGCTGTGAGGCGTGGTGGTAAGTATAAAGCCTCTCGGTTG
ACTGACCCAAAGAGTACGTGGCTGGTGTGTGGTCTGACAAACTGCTGTAC
GTTAGCAGTAAGTAGCTGGGGTGGCATGGCGGTACGCCAAAGTCGAAGTG
CGGTGCAGAGCAGCATGATAGTATGACCTAACAGCAACAGCGGCCGATCG
ATTGCGATCCCTGCTGTCCAATTCGATTTCAAGGTCAATTAGGAGTGGTC
TTGCATCCTTCTTACTTCAAGTAGTGCTGAGGAGCGCGGCGGTGTTATGC
GTTCCAGATCTTTGGATTCGATGTGCTGCGTGTTATCACATCATACGTGT
ATGTGCAGTCAGTGTTGCAAGGTGTTGCTTTTTTCGTCGACCCTCATACA
TAAGAAACGAACGAAACAGCCCTCGACGCACGAATTAAACACAACGCTCA
CCCTCCGCTGCCCAAGACAAGACAAGACAAGACGGCCTGCACCCTCAAGA
CAAGACGGCCTGCATCCTCACAAAGGATGCTGAGAGAAGCGTGGCGATAG
CTGCAATGCCTGCGTTGTCCAAAGCTAGGAGCGGCAAGATTGGGCCAGTT
GTTGGGTGGTTGCTGGTTGGCGTTCTTGGCGAGGTCGCTCTCAAATGGTG
CGCATGCGGGCGTTGCAGCTAGAATTTGAAGCGTGCTTGAACGTATCCGA
ATGTGAAGCTTTCACGGAGTCCCGCAGATGATCCCTGCCGAATGACGGTG
CTTGGCTTGCTTCCTTTCCTTCGTTTTGGCAGGAGTGGCAACCGAAGCGG
AACGCCGACTACACCAAGCTCGGGTCGAAGTGGTCCTTCGGAGCGCCCAT
CGGGGCCATCAAGGGCGGCCAGGTGGGCTCATTTTTTTGCTTCCCGACTT
CGGGATGTACTGAGGATTGGCATCGCGGTATTCGTATGGGCCTCGCTCAA
CCCACGCATGCTCGCCAGCTTTACCGACCAAACATACCAATCAATAAAAA
AATCAACGCGTTTGTGTTGTTGTTCGAAAATTGTCGGTCGATTTGTCTCT
CTGCCGATTAGGTGGACGCCTTGGCGTGCCTCCAGGTTAGCGAGGACGAA
GGCGTCGTCGTGGAGTGGATCTGCGGCAACCCGGTGACCCTCGGCATCCC
GGGCAACGCCGTGGAGTGGCTGGCCAGTGGCGTCCACGCCCTCTGCGGCA
AGAGGCTCGACCTTCCGGTAACGATTTCGTCAAGGGCGAGGGGCGATGGA
GGGGGAGATGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:276016..278477-

>mRNA_P-littoralis_Contig63.50.1 ID=mRNA_P-littoralis_Contig63.50.1|Name=mRNA_P-littoralis_Contig63.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1017bp|location=Sequence derived from alignment at P-littoralis_Contig63:276016..278477- (Pylaiella littoralis U1_48)
CGTCGCTTTCGGGTCCTCTTTTGGTTACAGCGTGGACAAACGATGGCAAT
GCGGCGACGGCGGGCACCCATGTGGATCACCTTCGTACTCTCGTTTCTGT
CGAGAAAGGAGGAGTGCTTGGGTTTCGTGGCAGGCCCAGCGGATCCTACA
ACAACGAACAGTCATCATGCACGGCAGCAGCAGCACCAGCAGCAGGCCTG
CTCGCCGTTGGTGCGCCGAAGAACAACAGGAGTGCCGGCATCATCATCAT
CATCACCATCAACACCAACACCATCCCCAGAAGAAAGAACAGCAGCAAGA
ATAGCAATGCCCTTCTCGAGAACAGCTCTGCGAGCTACGGGGTTTGGCCC
TGCGCCAGCCCCGAAGCGCCCGCCCCGACCCAGACCAACTGCGACCCCAA
CACCTGATCCCAGCCCATACTACCCGAGAGAGGACGAAGAAGATACCGAC
AACGATAGCAGTCACCCCTCAGAGAGAGGAGGCGACGACGGCGGCGATGG
AAAACCGTTCCCCGAGCTGGGGGACGCGAGAAAGGTGGAGGAGCCCCGCG
GGATCGGGACGTTGTTCGAGTCGGAAGACGAGGTGATCCGCGAGCTCTCG
AGCGAGGAGTACTTGGAATTGCTGAAGGACTGGGCTCCGATCGCGTCCTT
CGCGTCCGTCGAGGCCATCGACGCCAAGGTCAAGGAGGAGGCGACCTGCA
TCCTCACGGTGCTGAGAGGCATGGCGGAGTGGCAACCGAAGCGGAACGCC
GACTACACCAAGCTCGGGTCGAAGTGGTCCTTCGGAGCGCCCATCGGGGC
CATCAAGGGCGGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTTAGCGAGG
ACGAAGGCGTCGTCGTGGAGTGGATCTGCGGCAACCCGGTGACCCTCGGC
ATCCCGGGCAACGCCGTGGAGTGGCTGGCCAGTGGCGTCCACGCCCTCTG
CGGCAAGAGGCTCGACCTTCCGGTAACGATTTCGTCAAGGGCGAGGGGCG
ATGGAGGGGGAGATGGA
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