mRNA_P-littoralis_Contig629.18.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI) HSP 1 Score: 195 bits (495), Expect = 4.370e-59 Identity = 90/137 (65.69%), Postives = 113/137 (82.48%), Query Frame = 1
Query: 364 PLPWGLRLLQLVLWNIACIASLVIPLVWATPDYLRQVQLGVKNFDVQAHGLIAFFPLVDQMLIADEFKPKHVVISQVYGVIYLTFSVFWYYNAPEDEKYLYEDVLDWGEHRLSASIWAVVALGVVVPLAALVHLSIY 774
P+P GLR LQLVLWNIACIASL++ VWA+ DY+RQV+ G KNFDVQAHGL+AFF LVDQ+LIAD FK H++ +Q+YG++YL FSV W+Y PEDEKYLYED LDWGE+RL A + VA+GV+VP+A L+HL ++
Sbjct: 10 PVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVF 146
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE) HSP 1 Score: 197 bits (500), Expect = 9.720e-59 Identity = 91/137 (66.42%), Postives = 114/137 (83.21%), Query Frame = 1
Query: 364 PLPWGLRLLQLVLWNIACIASLVIPLVWATPDYLRQVQLGVKNFDVQAHGLIAFFPLVDQMLIADEFKPKHVVISQVYGVIYLTFSVFWYYNAPEDEKYLYEDVLDWGEHRLSASIWAVVALGVVVPLAALVHLSIY 774
P+P GLR LQLVLWNIACIASL++ VWAT DY+RQV+ GVKNFDVQAHGL+AFF LVDQ+LIAD +K H++ +Q+YG++YL FSV W+YN PEDEKYLYED LDW E+RL A + VA+GV+VP+A L+HL ++
Sbjct: 92 PVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVF 228
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 169 bits (428), Expect = 8.460e-48 Identity = 104/261 (39.85%), Postives = 146/261 (55.94%), Query Frame = 1
Query: 4 RVGTSRFLPQGAFVVYKLVLATYYLFWAVYWPEVDGFEKQSANQLTFWTWDVCAGYFVVSTFTAGLCWQAAKEHESMLSTSAAHESPIITSEPTTATMTPI--GEPA--AASAATVAQDCGDGLPLPWGLRLLQLVLWNIACIASLVIPLVWATPDYLRQVQLGVKNFDVQAHGLIAFFPLVDQMLIADEFKPKHVVISQVYGVIYLTFSVFWYYNAPEDEKYLYEDVLDWGEHRLSASIWAVVALGVVVPLAALVHLSIY 774
R+GTSRFLPQG FV+YKL LA Y+L+WA++W V + + LT WTW YFVVS +A LCW+A T P+ G+PA A +++ + G P+P LR LQL LW+ ACI SL++ ++ Y + D QAH +A L+DQ L+ADEFK ++V+ Q +GVIY+ F+V WYY AP+D++ +Y +LDW ++ L A I+A A+ V PL LVH I+
Sbjct: 17 RIGTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYN--TGRFLTHWTWYATTTYFVVSALSAFLCWRAIA---------------------VTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGD---KLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIF 250
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 8.240e-21 Identity = 77/264 (29.17%), Postives = 124/264 (46.97%), Query Frame = 1
Query: 1 LRVGTSRFLPQGAFVVYKLVLATYYLFWAVYWPEVDGFEKQSANQL-TFWTWDVCAGYFVVSTFTAGLC-----WQAAKEHESMLSTSAAHESPIITSEPTTATMTPIGEPAAASAATVAQDCGDGLPLPWGLRLLQLVLWNIACIASLVIPLVWATPDYLRQVQLGVKNFDVQAHGLIAFFPLVDQMLIADEFKPKHVVISQVYGVIYLTFSVFWYYNAPEDEKYLYEDVLDWGEHRLSASIWAVVALGVVVPLAALVHLSIY 774
LR TSRFL G FV +K + Y+L W WP + S T+W W YF +S TA C W AA + + + SA S P + G+ + + T PL + +QL WN+AC+ SL + +++ + Y + + D+ AH LIAF + DQML+A F+ + + ++V+ + YL +S+ WY+ E L +LDW H A ++V + V++P +++H I+
Sbjct: 13 LRAATSRFLKPGPFVAFKGLFVAYFLIWCFLWP----LDYTSMYLFATYWVWYTGTAYFALSFATA--CAHFRRWSAATQARAPDNGSAGGGS----DRPGPSWSNLTGDVSTPALRTRIH------PLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGT---PITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFLEQE----LIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIF 253
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 9.770e-20 Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 352 GDGLPLPWGLRLLQLVLWNIACIASL-VIPLVWATPDYLRQVQLGVKNFDVQAHGLIAFFPLVDQMLIADEFKPKHVVISQVYGVIYLTFSVFWYYNAPEDEKYLYEDVLDWGEHRLSASIWAVVALGVVVPLAALVHLSIY 774
G P+P LR LQLVLW+ ACI SL V+ + W G + L+DQ L+ADEFK ++++ Q +GVIYL F+V WYY AP+D++ +Y +LDW ++ L A I+A A+ V PL LVHL ++
Sbjct: 10 GSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFW---------------------GAL----LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLF 125 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig629.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig629.18.1 >prot_P-littoralis_Contig629.18.1 ID=prot_P-littoralis_Contig629.18.1|Name=mRNA_P-littoralis_Contig629.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=268bp LRVGTSRFLPQGAFVVYKLVLATYYLFWAVYWPEVDGFEKQSANQLTFWTback to top mRNA from alignment at P-littoralis_Contig629:151000..155895+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig629.18.1 ID=mRNA_P-littoralis_Contig629.18.1|Name=mRNA_P-littoralis_Contig629.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4896bp|location=Sequence derived from alignment at P-littoralis_Contig629:151000..155895+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig629:151000..155895+ >mRNA_P-littoralis_Contig629.18.1 ID=mRNA_P-littoralis_Contig629.18.1|Name=mRNA_P-littoralis_Contig629.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=804bp|location=Sequence derived from alignment at P-littoralis_Contig629:151000..155895+ (Pylaiella littoralis U1_48)back to top |