mRNA_P-littoralis_Contig627.20.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5L437_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L437_9PHAE) HSP 1 Score: 140 bits (354), Expect = 5.130e-40 Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = 1
Query: 52 RDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQN 378
R EV+ LDDAKT LP CLA+G P+V++KSPQ V+LGVCNN+DG+V IEL RE+ +QN G+RVVHLKYPPV+V V+I++AD+AGL+LPGLPRGV+ VE+N
Sbjct: 14 RSEVNPLDDAKTKGLPRQLCLAVGIPIVVYKSPQHVLLGVCNNSDGIVRAIELYQREQ-VQNHNDGYRVVHLKYPPVRVFVHIESADDAGLKLPGLPRGVVAFGPVERN 121
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.320e-38 Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
+VPP A P GLR E+ SLDD KTN+LP+ ACLAIGAPVVLHKSPQFV+LGVCNN+DG++ GIEL D E + G+ VV L+Y P+++ VYIK+AD AGL L GL RGVI V+ VE+
Sbjct: 98 EVPPTDAPWPAGLRREIKSLDDGKTNDLPTSACLAIGAPVVLHKSPQFVLLGVCNNSDGIIRGIEL-DPREGYASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVER 217
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.220e-38 Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 7 ASQVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
A + P A PTGLR+E++SLDDAKT +LP+LA LA+GAPVV+HK PQFV+LGVCNN+DG++ GIEL RE+ L + G+ VV+L+Y P++V VYIK AD+AGL L GL RGV+ ++ VE+
Sbjct: 2041 AEEKPATNAPWPTGLREEINSLDDAKTKDLPTLAFLAVGAPVVVHKKPQFVLLGVCNNSDGIIRGIELDPREDFLLDPTPGYSVVNLRYAPLRVFVYIKTADDAGLHLEGLDRGVVAIAPVEK 2163
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.980e-37 Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
+VPP A P GLR E+ SLDD KTN+LP+ ACLAIGAPVVLHKSPQFV+LGVCNN+DG++ GIEL D E + G+ VV L+Y P+++ VYIK+AD AGL L GL RGVI V+ VE+
Sbjct: 1805 EVPPTDAPWPAGLRREIKSLDDGKTNDLPTSACLAIGAPVVLHKSPQFVLLGVCNNSDGIIRGIEL-DPREGYASSTAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVER 1924
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE) HSP 1 Score: 142 bits (357), Expect = 2.670e-36 Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 1
Query: 13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
Q P A PTGLR+E++SLDDA T +LP+LA LA+GAPVV+HK PQFV+LGVCNN+DG++ GIEL E+ L + G+ VV+L+Y P++V VYIK AD+AGL L GL RGV+ ++ VE+
Sbjct: 577 QKPATNAPWPTGLREEINSLDDANTKDLPTLAFLAVGAPVVVHKRPQFVLLGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEK 697
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE) HSP 1 Score: 140 bits (354), Expect = 8.040e-36 Identity = 69/128 (53.91%), Postives = 95/128 (74.22%), Query Frame = 1
Query: 13 QVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQNQRSTSK 396
+ P GA+ P LR+EV+SLDD KT +LP CLA+G P+V+HKSPQ V+LGVC+N DG+V IEL RE+ +QN + G+RVVHLK+ PV+V V+I++ D++GL+LPG PRGV+ +E+N T K
Sbjct: 1292 ETPQAGAAWPPCLRNEVNSLDDTKTKDLPRQLCLAVGVPIVVHKSPQHVLLGVCSNRDGIVRAIELDQREQ-IQNHDGGYRVVHLKHLPVRVFVHIESMDDSGLKLPGFPRGVVAFGPIERNVVLTGK 1418
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 124 bits (312), Expect = 3.660e-30 Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 46 GLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQN 378
GLRDE+SSLDDAKTN+LP+LACLAIGAPVVLHK PQFV+LGVCNN+DG++ GIE+ REE VYI+ A +AGL+LP L RGV +V VE+N
Sbjct: 1700 GLRDEISSLDDAKTNDLPTLACLAIGAPVVLHKQPQFVILGVCNNSDGIIRGIEITQREEVF--------------------VYIQTAYDAGLKLPDLCRGVTSVGPVERN 1790
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Match: A0A6H5JCW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.760e-27 Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 49 LRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPQFVVLGVCNNADGVVCGIELGDREETLQNQEHGHRVVHLKYPPVKVQVYIKAADNAGLQLPGLPRGVINVSSVEQ 375
LRDEV+++D+A ++LP++ACLA+GA VV+HKSPQFV+LGVCNN+DGV+ IEL REE + GH VV+L+Y PV+ L GLPRGV+ + VE+
Sbjct: 26 LRDEVNAIDNASADDLPTVACLAVGAAVVIHKSPQFVLLGVCNNSDGVIDSIELDQREEYHVHSNPGHSVVYLRYTPVR--------------LDGLPRGVVAFAPVEK 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig627.20.1 >prot_P-littoralis_Contig627.20.1 ID=prot_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp LSASQVPPPGASSPTGLRDEVSSLDDAKTNNLPSLACLAIGAPVVLHKSPback to top mRNA from alignment at P-littoralis_Contig627:93002..93460- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig627.20.1 ID=mRNA_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig627:93002..93460- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig627:93002..93460- >mRNA_P-littoralis_Contig627.20.1 ID=mRNA_P-littoralis_Contig627.20.1|Name=mRNA_P-littoralis_Contig627.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig627:93002..93460- (Pylaiella littoralis U1_48)back to top |