mRNA_P-littoralis_Contig625.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig625.59.1
Unique NamemRNA_P-littoralis_Contig625.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig625.59.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.910e-21
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:  171 LLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 476
            LLD+L+ +V GFR +   GAGPNVT  GLA    XXXXX N GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:  120 LLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE4.910e-2158.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:167102..168140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791305.6169658-UTR-P-littoralis_Contig625:167101..1671831680791305.6169658-UTR-P-littoralis_Contig625:167101..167183Pylaiella littoralis U1_48UTRP-littoralis_Contig625 167102..167183 +
1680791305.6308444-UTR-P-littoralis_Contig625:167520..1675541680791305.6308444-UTR-P-littoralis_Contig625:167520..167554Pylaiella littoralis U1_48UTRP-littoralis_Contig625 167521..167554 +
1680791305.6523538-UTR-P-littoralis_Contig625:167917..1681401680791305.6523538-UTR-P-littoralis_Contig625:167917..168140Pylaiella littoralis U1_48UTRP-littoralis_Contig625 167918..168140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791305.6421182-CDS-P-littoralis_Contig625:167554..1679171680791305.6421182-CDS-P-littoralis_Contig625:167554..167917Pylaiella littoralis U1_48CDSP-littoralis_Contig625 167555..167917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.59.1prot_P-littoralis_Contig625.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig625 167555..167917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig625.59.1

>prot_P-littoralis_Contig625.59.1 ID=prot_P-littoralis_Contig625.59.1|Name=mRNA_P-littoralis_Contig625.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MPSPSSSSTRVKNIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGG
RGGGRGGENLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPI
VRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig625:167102..168140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig625.59.1 ID=mRNA_P-littoralis_Contig625.59.1|Name=mRNA_P-littoralis_Contig625.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-littoralis_Contig625:167102..168140+ (Pylaiella littoralis U1_48)
TGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGTATTGCACT
ACCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTGTT
CAATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACA
ATCTCCATTCCGCAGCCGTAGTTGATTAAGACATAAACTCCATCCTCCCT
CGGTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTT
CTGATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGG
AGACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGT
AGCTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGCTCCCC
GTCCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCAGA
AAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTT
GCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTG
ACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGG
GGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTC
GACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGG
AAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCG
ATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTAC
CGGGGGTGATTCGTGAAGTAACTACCGAGGCAGGAGGTGAAGGTTGGGAT
GTCGGTGGTATGTTTTTTTTGTTTTGCTTTGTCATAATGTAATTGATGTT
CGCGGATCTGAGCTGCCAATCTGGTTTTGTCTTGCCAGTGTTATGTGCGT
GTCAAAGTTGGCGTCTGGTCTGGTGGCGGTTTACCCTCGTCTCGCCACAA
CGACCGCAGATGCCTTGCACACCTTAGACGCTCCAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig625:167102..168140+

>mRNA_P-littoralis_Contig625.59.1 ID=mRNA_P-littoralis_Contig625.59.1|Name=mRNA_P-littoralis_Contig625.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig625:167102..168140+ (Pylaiella littoralis U1_48)
ATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTTGCA
AATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTGACT
CGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGGGGT
CGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTCGAC
AGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGGAAG
AATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCGATT
GTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTACCGG
GGGTGATTCGTGA
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