mRNA_P-littoralis_Contig623.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.37.1
Unique NamemRNA_P-littoralis_Contig623.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: D8LER2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER2_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 9.160e-113
Identity = 213/319 (66.77%), Postives = 240/319 (75.24%), Query Frame = 3 
Query:  150 MVSGQLSLVPIGDALAVKEELSLESAVVTLRKLDGRDKFTKMMQYGARFFYWWFASSDPALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGG----NGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDG 1094
            +V G  +++PI DALAVKE +SLES V TLRKLDGRDKFTK+MQYGARF  WW ++ DP LS+R FKLYRTTQRSRKAFRMLKILDE VKL++ILRTAG N   S S  T FLGY E LMS+RCL MGAFWTFDNLNYLT+T+TVNFGVA+AT+GFSRSWSV+SAL I+LGIDSLRKTE+KRR  LS YA AVS+R   P      NG+G  XXXXXXXXXXXXXXXXXXXXXXX                                   LREAL RANA+HFKSWLMVLKGA+DLTCA+N++GMD PKR+ GRKLNDG
Sbjct:    2 VVPGPPTMIPIDDALAVKEAVSLESFVATLRKLDGRDKFTKLMQYGARFLAWWLSARDPDLSQRVFKLYRTTQRSRKAFRMLKILDEVVKLRQILRTAGGN---SASSRTAFLGYAETLMSVRCLAMGAFWTFDNLNYLTITETVNFGVAKATRGFSRSWSVSSALAIMLGIDSLRKTEKKRREALSAYAAAVSERIAPPDRCGHCNGNGXXXXXXXXXXXXXXXXXXXXXXXXXVAG--------------------------------LREALRRANADHFKSWLMVLKGALDLTCAVNVTGMDFPKRLLGRKLNDG 285
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A836CN76_9STRA (Peroxisomal biogenesis factor 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN76_9STRA)

HSP 1 Score: 221 bits (563), Expect = 5.890e-64
Identity = 143/328 (43.60%), Postives = 174/328 (53.05%), Query Frame = 3 
Query:  174 VPIGDALAVKEELSLESAVVTLRKLDGRDKFTKMMQYGARFFYWWFASSDP--ALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWP 1151
            VP+ D LA K  +SLE+ V T  KLDGRDK TK+MQYGARF  W+F S  P  AL ERA  LYRTTQ SRKAFRMLK+ DEAVK+  I +   +  T  G         T      R   MG FWT DNL+YLT T TV +G  RA K FSR W+VAS   I+L   +LR+T + RR  L+E    ++  A +P                                           V                     +    L  ANA+HFK+ L +LK  +DLTCA+NISG+DLPK++FG+KLNDGV+GA G VSALTVLYN WP
Sbjct:   38 VPVKDGLATKAPISLEAYVQTTSKLDGRDKVTKIMQYGARFLSWYFTSVAPNKALQERAHLLYRTTQVSRKAFRMLKVADEAVKIMAIAQNKQQRGTLKGKPEHCHGQPT------RSAAMGLFWTMDNLHYLTTTKTVAYGHQRALKVFSRCWTVASLCMIVLSTQALRETGQ-RRSALAEELARLTADAQSP----------------------------------------HTAVE--------------------KAAADLRAANAQHFKNCLALLKAVMDLTCAVNISGVDLPKKVFGKKLNDGVIGASGIVSALTVLYNCWP 298
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A6H5KFY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.250e-58
Identity = 114/224 (50.89%), Postives = 131/224 (58.48%), Query Frame = 3 
Query:  489 GYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWPAKQ 1160
            GY E LM +RCL MGAFWTFDNLNYLT+T+TVNFGVARAT+GFSRSWSV+SAL I+LGIDSLRK     RG      V   QR         G                                                            LREAL +ANA+HFKSWLMVLKGA+DLTCA+N++GMDLPKR+ GRKLNDG+VGA GC SAL VLYN+WP++Q
Sbjct:   15 GYAETLMFVRCLAMGAFWTFDNLNYLTITETVNFGVARATRGFSRSWSVSSALAIMLGIDSLRKVPL--RG--GSCGVVERQRXXXXXXXXKGDVAG--------------------------------------------------------LREALRQANADHFKSWLMVLKGALDLTCAVNVTGMDLPKRLLGRKLNDGIVGAAGCASALCVLYNNWPSRQ 178
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A835YNP0_9STRA (Peroxisomal biogenesis factor 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.360e-58
Identity = 122/335 (36.42%), Postives = 174/335 (51.94%), Query Frame = 3 
Query:  162 QLSLVPIGDALAVKEELSLESAVVTLRKLDGRDKFTKMMQYGARFFYWWFASSDP--ALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREV-RLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWPAK 1157
            +L  +P+ D  A K  +SL + V   +KL+GRDK TK++QYG+RF +W+F +  P   L+++A+ LYR TQ SRKAFRM K+ DE V++  ++ +              +  +   +  L+C  MGAFWT+DNLNYLT    + +G  RA +GFSRSW++A+   I LG+ +L +T ++R+ +  EY  A    AV  G   D                                                         REV R+R     AN  HF S LM+ K  +DLT AIN+ GMDL  ++FG+KLNDGV+GA G +SAL V++N WP K
Sbjct:   21 ELPAIPVADGFANKAPISLAAYVQATQKLEGRDKLTKIVQYGSRFLFWYFKNVAPNGELADKAYSLYRVTQLSRKAFRMAKVADEVVRITALMESKQ------------YPNFKSTVAILKCASMGAFWTYDNLNYLTQAKVIGYGTDRAMRGFSRSWAIANVAMIYLGLQTLTETSKRRQALAQEYKKAA---AVEQGNAAD---------------------------------------------------------REVQRIRGEAKAANVAHFSSCLMLCKAVLDLTVAINMPGMDLLLKVFGKKLNDGVMGASGVLSALIVIFNCWPDK 283
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: K3W8G5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W8G5_GLOUD)

HSP 1 Score: 109 bits (272), Expect = 2.490e-23
Identity = 91/322 (28.26%), Postives = 136/322 (42.24%), Query Frame = 3 
Query:  192 LAVKEELSLESAVVTLRKLDGRDKFTKMMQYGARF--FYWWFASSDPALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWP 1151
            +  K  LSL++ +     ++GRDK TK+MQYG+R   FY   A  +  + ++   LY+TTQ SRKAFR+ K +    KLQ ++  A K+ T           +   L  ++   M  F+ +DN+ + +    +NF    A K     W  A+     L I +L                                                                  NG  ++ +C R+    E+   R   L+  L       FK +L VLK   DL  + N SG+ L +RI G KL+DG+VG++GCVSALTV+YN+WP
Sbjct:    1 MEAKAPLSLDTVIKVAFSMEGRDKLTKLMQYGSRALAFYVLSADKNSDVGKKLTNLYKTTQTSRKAFRLGKSVTYYKKLQVLV--ANKSLTP----------WQRYLQYIQNTGMFGFFIYDNMAFASKAKVINFNAEEAAKRGGVLWFCANIAGFALAITNL------------------------------------------------------------------NGDIEKEKCIRDILASEEDEARIASLQAQLDALEQSRFKKFLAVLKVTCDLIVSSNTSGIRLAERITGTKLHDGIVGSVGCVSALTVIYNAWP 244
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A5D6Y5Z2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5Z2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.110e-22
Identity = 94/331 (28.40%), Postives = 134/331 (40.48%), Query Frame = 3 
Query:  165 LSLVPIGDALAVKEELSLESAVVTLRKLDGRDKFTKMMQYGARFFYWWFASSDPA--LSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWP 1151
            LS  P    +  K  LS ++AV     ++GRDK TK+MQYG+R   ++  S+DP     ++   LY+TTQ SRKAFR+ K    A   +K+L  A     +   R      Y + + +     M  F+ +DN+ +       NF    A K     W  A+    +L I SL+    K + V    A                                                                   ED A R   L+  L        K +L VLK   DL  + N SG+ L +RI G KL+DG++G++GCVSALTV+YN+WP
Sbjct:  394 LSQRPAAHTMETKAPLSFDAAVKVAFSMEGRDKLTKLMQYGSRALAFYVLSADPKSDFGQKLSNLYKTTQTSRKAFRLGK---SATYYKKLLALADNKALSPWQR------YLQLIQNSG---MFGFFIYDNMAFAGKAKIANFNADEAAKRGGVLWFCANIAGFMLAISSLQADIEKEKVVRDVLA------------------------------------------------------------------SEDDATRIQALQAQLDALEQSRLKKFLAVLKVTCDLIVSSNTSGIRLAERITGSKLHDGIIGSVGCVSALTVIYNAWP 646
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: F0WDE9_9STRA (Uncharacterized protein AlNc14C66G4669 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WDE9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.520e-14
Identity = 80/328 (24.39%), Postives = 133/328 (40.55%), Query Frame = 3 
Query:  204 EELSLESAVVTLRK-LDGRDKFTKMMQYGARFFYWW-FASSDPALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLR------KTERKRRGVLSEY-AVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWPAKQ 1160
            E+ +  +A++++   L+GRDK TK++QYG+R   W+ FAS    +      LY+ TQ++RK FR+ K      KL  IL    K  T+   R    +         +C +MG F  +DN+ +L+  + V     +A +     W +A+    L  ++ ++         R+R   LS      VSQ  +                                                                      +AL +  +++  S   +LK   DL  + N SG+ +P+R+ G KL+DG++G +GC+SA+  LYN WP  Q
Sbjct:    7 EDRAFWNAIISVASTLEGRDKLTKLLQYGSRALSWYCFASHTNKMGMGFSNLYKATQQARKVFRLGKSALLYAKLGTILE---KKDTSQYERNLELIQ--------QCGMMG-FLAYDNIIFLSKANVVKLDEGKAVRQGGLLWFIANVAAFLRTVNLIKLNIDEENANRERLSFLSNADQTEVSQAQL----------------------------------------------------------------------DALLQTRSKNLVS---LLKITCDLVVSSNTSGVRIPERVMGTKLHDGIIGPVGCLSAILFLYNMWPKPQ 249
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A024G6M4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6M4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.430e-12
Identity = 72/308 (23.38%), Postives = 117/308 (37.99%), Query Frame = 3 
Query:  246 LDGRDKFTKMMQYGARFFYWW-FASSDPALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKILRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDTVNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSE--YAVAVSQRAVTPGGNGDGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGVPQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWPAKQ 1160
            L+GRDK TK++QYG+R   W+ F      +  R   LY+ TQ++RK FR+ K      K + IL    K  T+          Y   L  ++   M  F  +DN+ + +  + +    A+A +     W +A+    L   DSL+    +   +     + + V Q                                                                       L+  L        K+ + +LK   DL  + N SG+ L +R+ G+KL+DG++G++GC+SA+  LYN WP  Q
Sbjct:   22 LEGRDKLTKLLQYGSRALAWYCFTLGANEIGTRLSNLYKATQQARKVFRLGKSALLYTKFESILE---KKCTSH---------YMRNLELVQNCGMIGFLAYDNIIFASKANVLKVDEAKAVRQGGLLWFIANIAGFLRAADSLKLNVDEENDIRKRLTFDLKVDQMEF--------------------------------------------------------------------LQAQLDLLQETRSKNLISLLKITCDLVVSSNTSGVRLSERVVGKKLHDGIIGSVGCLSAILFLYNIWPKTQ 249
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A2D4BV97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV97_PYTIN)

HSP 1 Score: 76.6 bits (187), Expect = 6.260e-12
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  921 EDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWP 1151
            ED AR E  LR  +       FK +L +LK   DL  + N SG+ LP+R++G KL+DG++G IGCVSALTVLYN+WP
Sbjct:  169 EDPARIES-LRAQVQTLRQNRFKKFLAMLKVTCDLIVSSNTSGVRLPERVWGTKLHDGIIGPIGCVSALTVLYNTWP 244
[Close]
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Match: A0A485L3H7_9STRA (Aste57867_15481 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3H7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.140e-9
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:  984 FKSWLMVLKGAIDLTCAINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSW 1148
            FK  L +LK   DL  + N +G+ +P+R+FGRKLNDGV+GA+GCVSA  VL+N W
Sbjct:  173 FKKSLTLLKVTCDLIVSCNTAGVRIPERLFGRKLNDGVIGALGCVSAAVVLHNLW 227
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER2_ECTSI9.160e-11366.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN76_9STRA5.890e-6443.60Peroxisomal biogenesis factor 11-domain-containing... [more]
A0A6H5KFY8_9PHAE2.250e-5850.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNP0_9STRA2.360e-5836.42Peroxisomal biogenesis factor 11-domain-containing... [more]
K3W8G5_GLOUD2.490e-2328.26Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6Y5Z2_9STRA4.110e-2228.40Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WDE9_9STRA6.520e-1424.39Uncharacterized protein AlNc14C66G4669 n=1 Tax=Alb... [more]
A0A024G6M4_9STRA2.430e-1223.38Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4BV97_PYTIN6.260e-1251.95Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485L3H7_9STRA1.140e-956.36Aste57867_15481 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:54512..62670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000016575
PFAMsPEX11
Model size1611
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.27e-26
EggNOG OGs2CV0J@1|root,2RQ4E@2759|Eukaryota,1MFRI@121069|Pythiales
Ec32 ortholog descriptionPeroxisomal biogenesis factor 11
Ec32 orthologEc-26_000840.1
DescriptionPeroxisomal biogenesis factor 11 domain-containing protein. Source PGD
Cds size1191
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.37.1prot_P-littoralis_Contig623.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 54801..62539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.116276-UTR-P-littoralis_Contig623:54511..548001680791300.116276-UTR-P-littoralis_Contig623:54511..54800Pylaiella littoralis U1_48UTRP-littoralis_Contig623 54512..54800 -
1680791300.1933784-UTR-P-littoralis_Contig623:62539..626701680791300.1933784-UTR-P-littoralis_Contig623:62539..62670Pylaiella littoralis U1_48UTRP-littoralis_Contig623 62540..62670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791300.1302962-CDS-P-littoralis_Contig623:54800..551121680791300.1302962-CDS-P-littoralis_Contig623:54800..55112Pylaiella littoralis U1_48CDSP-littoralis_Contig623 54801..55112 -
1680791300.1417375-CDS-P-littoralis_Contig623:55541..558711680791300.1417375-CDS-P-littoralis_Contig623:55541..55871Pylaiella littoralis U1_48CDSP-littoralis_Contig623 55542..55871 -
1680791300.1527045-CDS-P-littoralis_Contig623:56256..565381680791300.1527045-CDS-P-littoralis_Contig623:56256..56538Pylaiella littoralis U1_48CDSP-littoralis_Contig623 56257..56538 -
1680791300.1683862-CDS-P-littoralis_Contig623:62006..621321680791300.1683862-CDS-P-littoralis_Contig623:62006..62132Pylaiella littoralis U1_48CDSP-littoralis_Contig623 62007..62132 -
1680791300.181481-CDS-P-littoralis_Contig623:62398..625391680791300.181481-CDS-P-littoralis_Contig623:62398..62539Pylaiella littoralis U1_48CDSP-littoralis_Contig623 62399..62539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.37.1

>prot_P-littoralis_Contig623.37.1 ID=prot_P-littoralis_Contig623.37.1|Name=mRNA_P-littoralis_Contig623.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=397bp
MTYSTNMVSGQLSLVPIGDALAVKEELSLESAVVTLRKLDGRDKFTKMMQ
YGARFFYWWFASSDPALSERAFKLYRTTQRSRKAFRMLKILDEAVKLQKI
LRTAGKNQTASGSRGTGFLGYTEALMSLRCLVMGAFWTFDNLNYLTLTDT
VNFGVARATKGFSRSWSVASALYILLGIDSLRKTERKRRGVLSEYAVAVS
QRAVTPGGNGDGRSNGHGNGESDSLGNSSNGYGNGHVNGNGRGDGNRNGV
PQQHQCEREEDEGEDGARREVRLREALTRANAEHFKSWLMVLKGAIDLTC
AINISGMDLPKRIFGRKLNDGVVGAIGCVSALTVLYNSWPAKQQQQQQQQ
QRLPQPTLRQQRNVQQLQQQPPQRTQVPPQQQEQQEQSRRGKGFAA*
back to top

mRNA from alignment at P-littoralis_Contig623:54512..62670-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.37.1 ID=mRNA_P-littoralis_Contig623.37.1|Name=mRNA_P-littoralis_Contig623.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8159bp|location=Sequence derived from alignment at P-littoralis_Contig623:54512..62670- (Pylaiella littoralis U1_48)
TGCGCGGACGCGGTTGAGCGGGGTGTGTGTTTTTTTTCGGCCCTCCCGCA
GGTTCAGGTTCTTGACGCCAGGTTTGCGGCAACACTCAGATACAAAGCAA
GAAGCCTGGCCTGGACCCTCTGTCTCTACTCATGACCTACTCGACGAACA
TGGTCTCGGGACAGCTATCGTTGGTGCCAATCGGTGACGCCCTCGCGGTG
AAGGAGGAGTTGAGCTTGGAGAGCGCCGTCGTGACACTCAGGAAGCTTGA
CGGACGCGACAAGTTCACCAAGGTGCTATATTCACCTCCGCTTTCCTCAG
TACCTCAATGACGTACAGCAGTACATCAACGACGATAACCTCTGGCTCCA
TTGGATGTTTGGAACGCTTACCCATAGCGACGGCTGGAGTGACGGACCTA
ACGTCGACAGCGTGTAGCAGATTGTTCGTAGTCACACAGCAGCAGTGCTT
CTCGACCCTACTACTGTGTTGTTGAACGTAGCTGCGGTCAACAAGGAAGT
CGCCTGTCTCTCGTTGCTTTTCGTCATCCGATCACCAGATGATGCAGTAC
GGGGCACGCTTCTTCTACTGGTGGTTCGCGTCGTCGGACCCAGCCTTGTC
CGAGCGTGCCTTCAAGCTCTACAGGACCACGCAGCGCTCACGCAAGGCCT
TCCGAATGCTCAAGGTGAGAAAATAGATATCGCCCTGAATTTGTACACTG
TACTGCTAACTGTCTACCAGAAAAGCAGTTTACTTTTGGATCAACTTTGA
AGAGTTGAAGTCAGCAGTTACGCCGCACTTTTTTCCCAGGTATATACAGA
GTAACACGATCTGGGGCTTTTTCTCACATTGCGCGTGAAAGTGGAAAGCG
ATCAATTCTTGAGTAAAGAATATTCGGTCGTACCATGGAGCAAAAAAAAA
AAAAAACTCCTGTGTTGACTTCCCCCTGTGTGACCCCGGTTGGAGCGTCT
ACCTACCCGAAAGGTGTAGAGTGGCGTCCAATTAAAGGGATGACAACACA
CACACACACGCACACATATGCCTCCACAGCAAAAGGTCAAGCAAGAGGGT
CATGTTAGGCGGTTTCTTGTAGGGCCGGTTTTTTTTTCATTTTTTGATAG
AATCCGAACGAACTTTTTCCGGCCAACGGCTGCCGATCCGCTGTTTTTAC
AGGTGATGCGTGTTTGGATTTTCGGTGATCCTTTTTTTACGTGGTTGGTT
GAAGAGTCGGCTCCAGAGTAAATATCTGCATCGAAGGACTGCATGGTGAT
TTTTTACTACGCTGAGACCCGTTGTTTGCATCGCCGCTCGTAACTTTCGA
ACGAATGAAGACACAAGCAAAGACGAAGGCATCTTCCGTGAGCTGTGTAT
ATGATCCCCCTCCTGTCGTGATCGCTTGGATAAGGGTTACATCCGTACAT
TCGCAACGAAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGAAA
CATCTATCAGCCGGTCTGCTGTACAGCAGCATTATTATATACTGCTGTAT
GTATCGTAGTTGTACAGCAGTAGACAAAGGAGGAGATGATAGCTCGGGTT
CTTTTTTACAACACGACATGCCACAGCCACGAGCAAGCCCATTTTGCGAA
TATGCCAGTGATCCTCACCCAAACGATTACCACACGAGGGGGGCCATACG
CACAGCTCACGGAAGATGGGTTTGTTTGTCATCGCTGTGGCTTCATTCAT
TGGGGAGTTACGAGCGAAGATTCCAACTGGTCTCACTCGGAGGAAAGGAG
CTTTGATACTCCTCCTCCTGCTCCTGCTGTTGTGCTGATAATGCTGCTGC
TATATACGGTTGATTTTGGTTGCTGATGAACACGATGGAATGAATGATGA
CACGGCAAGCGTACACAGAAAGATGGTGGGCACATATATGGACAGCAGCA
AGCAGTAGCAGCAGCTCTCCTCCTCTGCTGCTGCTCTGTTATGATTAGTA
TCGTTTGTTTTGTCCACACAAAGAGAGAGACAACTTCACACATTTTTTTT
TGTATATTTTCCGATCGTATTTTCCGAACTGATCCAGCGTTCGGAAAATG
TCCGATTTTCCGGCAGAAATCCGCTCAAAATCTGTTCGGAAATTTTTGTT
CGGGAAATGTTGTTCGGAAAAAGCTGTTTTCCGAGCCTATAAGAAGCCTG
ATTTAAAAAAAGTTCGGAACCTATCAGAAAATGAATAAAAACTCCGGCCC
TACAAGAAACCGCCTTAGACCGGATTTAATGGAGACAGAAAATTCATCAA
AATGCAATCTTCGGCCAGGATTCGGCGACGAGCATTTTTTTTTCACTTTT
TATGGATAAAAATCCTTCTGAAAATGCGGCCGAAGATTTCTCAACCGGCC
GATTCCGGCCCTTTTTGGGAAATATTTGGTGAACATTTCCCAAACTCGGC
AGTCTTGAAAATCCTGACGCGGCGGGAATTAAAAGTCGGCCCGCTTATCG
TCCCGACACCCGACATACCAACACCAAGCGCAAACGCGACCTTCAGATGA
CACACACACGGCTTAGAGCTTGGCATACACCTACCACACTACCCAAGGTG
ACACACACGTGCAAGCACGACGGAGAGGGCTCAAAGAAACCCTTGAAATC
ACCGTGACAAACATTTTGTTTGGCTGTGGGTTGGTGACGGGCACACGTCG
ACAGACCCGCCAGGCTGCAATTAAGAAAATAAATGGGAGCGGCTCTTCAT
ATAGGTCACGTGGAACGTGGTATGTTTCATCTCTCCGTGAACGGCTCTGC
TCTCGGTTGGGAAGACAGAACACACGCACGTGACTCGATCTCATATAATC
AACGAACCGTTGCTCATTTTATTTGCATGTCTGGCACGCTTCCACCACCA
ACCAGTGGTCAAGGTGTTGACACGGTGACAAGAGAGTTGCTACGAGCTCT
CTACGGCCTCTCGACGTTCAGATTCCATGGCGCAGTGGTTATTTTTGTCC
GTAACATTCGTTGACACAGCCAGCCGCAGACCAATACCACCGAAAATAAA
AAAAAAGAGAAGAGAAAGAAAAAATTACAGAAGGAAAAAAAAAAGGTCTG
TGACCACAAGCTGCGGTACGAAATGTTTGGGGAACGAACATTCGGCTCCA
AAATGCTGACGAGCATTTTGTGACAAGATTGCATTTTTACGAATTTTGCC
GTCCCCATTAAACCCGGTCTCAGGCTGTTTCTAACGGTTCTCCGGATTTT
TGTTTTGAATTCAGATCCCCTGCCTTAATCAAACGGAGGACGCCGCTACC
CCCCTCCCCGAAACAACCCTGTCGACCACAACAGGAGACAGCACCAACCA
GTACTCGGCTCCTGGGACACCAATACTGTAGCAATCAAATTATGTTGGAG
CGTGCGCTCCAGTGTTCTGAGGTTGACCACGGCAACTTTGGTGGGTGTGG
GTTTTGGCTGTGCCGAGATATTGCCGGCGGTGTGTGTCGAGGTGGAAATG
TCCGGTGAAATAGAAATAGGTCGTCGTCTGAGCCTGATTTCCTCCATCAG
GCTAGGACGACCTGTTTTTTTTCGCCGAATTTTCGAATTTTTTTCTTACC
TCAACCCACACCGCCGCCAGAACCTCGCCACAGCCAACGCCCACGCCCAC
CAAACTTGCTGTGGCTATTCTCAGAATACTGGAGCGCACGCTCCAGCAGG
TTTGATCGCGATTGGTGTCCCAGGGGCCGAGTGCTGGCTGGTGCTGTCTC
CGGTTGTGCTCAAAAAGTAGCCTTTTCAGCCGTTTGGGCTCTCTGAATTT
CGCAGGGGGGGGGGGGTACCAAGCGAAAAAAAGCAAGCCGTAAGAAACGG
TCTCACCCAGGTGCGTCCTCTTTTTCTTCTGAGGCTTTTCCTTGCTGCTG
CACCCCTAGCCTGAGAGCATACATCGGGTGTTTGGTTTAGGTGTAGCCGT
GTCTTTGGTTTGGAACAACCAAAGACCCGTGTTGTACTCTCGCCAGTGGA
TATTTTTTGGTTGTATCAAATCATGACAAAAAAACGGAAAAAACGCTCCG
GTGTGAGGCGGTTTATAGTGTAGTCGAAAAATCCGTTCAAAAAACAACAG
ATTCCAAATGGGCTTTTTTCGACCGAAGGCTCTCGATCGGCTGTTCTCAT
GGTGATCATATGATCGGATTTTTGGTGATTTCTGTTTTAGATTGTTGTGG
AGCCGGTTCCAACCTACACATGAACGGTTTATACGTCTAAGTCAAGAAAA
GTGTTTTTCTCACGCTGAGATCAGTTTGCACTGACGCTCATAACTTGCCA
ACGAATGAAGCCACAGCGATGGCAGAGCTACCCTCCGTGAGCTGTGCAAA
TCTTAATCTTCCTTCTCTTGTCGTGATCGTGTATGCCTTCGGGGGGTCGG
TAGGCTCGCAAAAAAAATGCTGATGTGATGTCAAACGCAAGAAAATGCGT
GCACAAACAAAATCACCAAAACGAGCTGCCGCTGCTGCTTGTTCCGCCAA
GACAGGTCTTGTTCACGAGTACTCATTTTGGTTCATGACGCAACGAGTGA
AGCCACAGCGATGAACTGCGTGTATGGTCCCCCTCGTGTGGTGATCACTT
GGGCTAGGATTACATGGGTATGTTCGCAGAATAATTTCGTCGTCTCCAAC
ACGAATGAAACAATAGAAGGAAGGTGAACCGGCCGGCGGTGCTGTACAGC
AGCAGATATCAACTACTGCTGTAAGTTTTATACTGGACAGCTCTCTTTCT
TTCTATCTCTCTTTGCGTTTTCGACATCATAGCCACCAGCATGTTCATTT
TGCGAACGTACCGGTGTAATCGTAACCCAAGCGAACACCACACGTGTAGG
ACCATACACGCAACTCGCGGGAGATGGCTTTGCATCGCTGTTGCTTCGTT
CGTTGGGGAGTCGTGAGAGAACGTTCACACGAATCTTAGCGAAACGAACG
ACTCTGCTGCTCGCTACTGCTGCTGCTGCTGCTGCTTTTATGTTTTTGCT
GCTGATGAACATCATGGATGGCGTAAAAAGATTACGGCAAACAGACACAG
AAGGCGGGCACATACATGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCTC
ACCTCCTCTTCTACTGCTGCTGCTCTGTCTGCTTCGGCGTTGACTGCTTT
GCCTTGATCTATGTGTTGTTTGTCACGGTGTGTGATGATGATGATGTGTT
CGCGACATGAACAGAGAGAAAAACATCCAGCGTATTTTATTTATTTTATT
TTATTTTATTTTCCGAACACGACGAAGAACGTGGCACTTTCCGACAGAAT
ACCGATGAAATTTCGTTCGGAAGAGTGTTTTCCAACAGCAAAAGAAAGTT
TATTTCGGGAAAATTCGGAATCTGCTGTATTTTAGACGGATTTTCCGATT
GCATAGAAAGTGGAAAGCGATTAATTCGTGAGTAAACGAAATTCGATCGT
ACCATCGACGAAGGAAAGGGATTGCTGTCCCCTTTCTCGCGATAAAAGCT
CAACCAAACAAGGCAAGCACCGCAGAGGGAAGTGGAGAAAAAAAAAAAAA
ATCCTGTGTTGACTTCCCCTGTGTGACCCCAGTTGGAGCGTCGACCTACC
CGAAAGGTGTAGAGTGGCGTCCAATTAAAGGGACGACAACACACACACAT
AATAAACCGTCTGACCCCGCCCGATGCGGCCGCGTTTACTGAAAGGTGTA
TACTTGTACCGGCGCCCAGAAAATATGGGTGACAACACACACATAGATCC
CCCGCTCGAATATAAGAGCAGACACAACATCTTTCGAGCATGTGGGTGTA
CCTGCCGCAGTTTTGGTTGGAATCTGGCAAGCCCGGCGCGAGTTTCTGTC
TCCTTGAAATGCTATGATAAATACGATCGCCGCTTCACGAGACATCGCAT
CTCCTCGGGTGCAGGGTGCTGCGATGTTCATAGTCGAAAGCGCGCGGCGA
CGATAGATCGATCCCGTTCCTCGCGCCGCGTCACCCGTCAACCGTGTACA
CGCACAGCGACTAACGACGTCCTGCGCACGAAAGCACCATCCACGTCCCA
CCACCAGTGAAAATATACACCGGTCTGAAAAAGCTTTTAACTTTTTCTTG
GGTACCCCACTGCTAGACGTTTTCCAGCCCTGCCCCCTCAATCCCCGCCA
TACGCAACACGTTCACACCCCCGGGACCCCAGATACTCGACGAGGCGGTG
AAGCTACAAAAAATTCTCCGCACAGCCGGAAAGAACCAGACCGCCTCCGG
CAGCAGAGGGACGGGTTTCCTAGGGTACACCGAGGCGTTGATGTCCCTCC
GCTGCCTGGTCATGGGAGCATTCTGGACCTTCGACAACCTCAACTATCTA
ACCTTGACGGACACGGTTAACTTCGGAGTGGCGAGGGCGACTAAGGGGTT
CTCTCGTTCGTGGTCTGTCGCGAGTGCCCTGTACATCCTTCTGGGTATCG
ACTCCCTCCGCAAGGTGAGGTTTTGTAGCTAGTTTTGCGGCCCCCGGCCT
TCCCTTGACGAATACGAAGCAGCAATACTGCTGTTGCTATGCTAACCTAT
TGAGCACTAGAAACGACCCTGTTGGGTGAGGATCTGTTAGGGGCACGGAC
AGCCCGTTGTCAAACGCACGAGAAAGGAAAGTTGACCCCAAGACCTTGTT
CACTAGAGAGTGGGAGACATCGCTTCCCATCGCACATACCGCAGGGTCCC
CGTGGATCAGTATCGAGTGCCGGGTACCCCAAACAGGATCGGATGACAAG
ACACCGCAGGTAAGCAAAAGCAGTTTCTCAGTGGTCCGAGCGCGCAATCG
TTGACCTTATGTCTTACCAAACGTGTCCCCCTACCCCTCCTTTTGGCAGA
CGGAAAGGAAGAGGCGAGGAGTCCTGTCGGAGTATGCGGTCGCGGTCAGC
CAACGAGCAGTGACCCCCGGCGGCAACGGCGATGGCCGCAGTAATGGCCA
CGGCAACGGTGAAAGCGACAGCCTCGGCAACAGCAGTAACGGCTACGGTA
ACGGCCACGTCAACGGCAACGGTCGCGGCGACGGCAACCGCAACGGCGTG
CCGCAGCAGCACCAGTGCGAGAGAGAGGAAGACGAAGGTGAAGATGGGGC
GCGACGAGAGGTTCGGTTGCGGGAAGCCTTGACACGCGCCAACGCGGAGC
ACTTCAAGTCGTGGCTGATGGTCTTGAAGGTGAGGGAGAGGCGGTGGCGT
TCATTGAAAATATTAAATGACTCAACGAGCGGTCTTTCAATTCCCCCCCT
CAAAACTATCCATGGAAGTGCAACGACGATGGCGACGACGGCCCTCCTCA
AACCAATCCGCGAAGTACCCTCCTTACGGCCACGTGTGTGCATGGTCTCT
CCTTTGAAAGGCGTTTCGGTGATTCGCCGACCGCACGGCAGTCAGCACGG
TGTCATACAGTACCAACCCTGTGTACCACAAAACACACAAAACTCTGCAT
CGATGGAAACAAGCGTCGTCTCGTACGCGTATATGATAGAAACAAGCGTC
GATTTCCTGAAAAATCGGATCGAAAGACCACAGATGTCCATCAATCACCT
CGAACCTTTCTTTCTTTTTTTAACGGGAAATAATCAAATGGAATCGGATC
AATCACAGGGGGCGATAGACCTGACGTGCGCCATCAATATCTCCGGGATG
GACCTCCCCAAGCGCATTTTTGGACGCAAGCTGAACGACGGCGTTGTCGG
GGCGATTGGGTGCGTTTCGGCCCTCACTGTCTTGTACAACTCCTGGCCGG
CAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTACCACAGCCAACG
CTGCGGCAACAGCGGAACGTTCAACAGCTGCAGCAGCAGCCTCCCCAAAG
AACTCAAGTGCCGCCCCAGCAGCAAGAGCAACAAGAGCAATCGCGACGCG
GCAAGGGCTTCGCAGCGTAACCGAGCTGTTTTTCTTTCACGCGGCAATTT
TGTACGCAGAGTGTGTGCATTTGGTGTGCACGCCGCTGTGTACCGCTCAG
ACCAGTTCGTGTCCTCGGCGAACGGAAAATATTTCATTATTAATGGTATA
TGTCATGAATCATAAATGCGACTCAAATAGAAGCACCCTCTTGGGGGTGC
CGTGGATGAAACAAGCGACGACTAGAAGCTAGCGTGGATCAAGACCCTAT
GATACTTGGAGTTTGTGTGTGACTGCGGGACGACAGAGAGGCGACGGCGT
TGGAGATTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig623:54512..62670-

>mRNA_P-littoralis_Contig623.37.1 ID=mRNA_P-littoralis_Contig623.37.1|Name=mRNA_P-littoralis_Contig623.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1191bp|location=Sequence derived from alignment at P-littoralis_Contig623:54512..62670- (Pylaiella littoralis U1_48)
ATGACCTACTCGACGAACATGGTCTCGGGACAGCTATCGTTGGTGCCAAT
CGGTGACGCCCTCGCGGTGAAGGAGGAGTTGAGCTTGGAGAGCGCCGTCG
TGACACTCAGGAAGCTTGACGGACGCGACAAGTTCACCAAGATGATGCAG
TACGGGGCACGCTTCTTCTACTGGTGGTTCGCGTCGTCGGACCCAGCCTT
GTCCGAGCGTGCCTTCAAGCTCTACAGGACCACGCAGCGCTCACGCAAGG
CCTTCCGAATGCTCAAGATACTCGACGAGGCGGTGAAGCTACAAAAAATT
CTCCGCACAGCCGGAAAGAACCAGACCGCCTCCGGCAGCAGAGGGACGGG
TTTCCTAGGGTACACCGAGGCGTTGATGTCCCTCCGCTGCCTGGTCATGG
GAGCATTCTGGACCTTCGACAACCTCAACTATCTAACCTTGACGGACACG
GTTAACTTCGGAGTGGCGAGGGCGACTAAGGGGTTCTCTCGTTCGTGGTC
TGTCGCGAGTGCCCTGTACATCCTTCTGGGTATCGACTCCCTCCGCAAGA
CGGAAAGGAAGAGGCGAGGAGTCCTGTCGGAGTATGCGGTCGCGGTCAGC
CAACGAGCAGTGACCCCCGGCGGCAACGGCGATGGCCGCAGTAATGGCCA
CGGCAACGGTGAAAGCGACAGCCTCGGCAACAGCAGTAACGGCTACGGTA
ACGGCCACGTCAACGGCAACGGTCGCGGCGACGGCAACCGCAACGGCGTG
CCGCAGCAGCACCAGTGCGAGAGAGAGGAAGACGAAGGTGAAGATGGGGC
GCGACGAGAGGTTCGGTTGCGGGAAGCCTTGACACGCGCCAACGCGGAGC
ACTTCAAGTCGTGGCTGATGGTCTTGAAGGGGGCGATAGACCTGACGTGC
GCCATCAATATCTCCGGGATGGACCTCCCCAAGCGCATTTTTGGACGCAA
GCTGAACGACGGCGTTGTCGGGGCGATTGGGTGCGTTTCGGCCCTCACTG
TCTTGTACAACTCCTGGCCGGCAAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGACTACCACAGCCAACGCTGCGGCAACAGCGGAACGTTCAACAGCT
GCAGCAGCAGCCTCCCCAAAGAACTCAAGTGCCGCCCCAGCAGCAAGAGC
AACAAGAGCAATCGCGACGCGGCAAGGGCTTCGCAGCGTAA
back to top