mRNA_P-littoralis_Contig622.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig622.10.1
Unique NamemRNA_P-littoralis_Contig622.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 6.010e-63
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 6.430e-57
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNL 400
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QH D LTKAIS+ESF LHR FVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 6.460e-57
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISIT+V + +QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.330e-56
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVM 394
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKA S+ESF LHR FV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.870e-56
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRE+VERKEISITHV +++QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 4.290e-56
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHV + +QHADFLTKAIS+ES  LHR FVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 8.720e-56
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.830e-55
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFV 391
            DVLKEVLFLRQVWRFMLP  GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKAIS+ESF LHR F 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 8.580e-55
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFM P A MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.280e-54
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  101 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 403
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIA+NPITNSNSKHIDVRHHFIRE+VERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig622.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE6.010e-6394.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE6.430e-5789.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE6.460e-5790.10Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.330e-5691.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE3.870e-5689.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE4.290e-5690.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE8.720e-5694.06Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE4.830e-5591.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE8.580e-5592.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE1.280e-5491.09Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig622contigP-littoralis_Contig622:117730..118135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7070.TC002223-PA
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size406
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.52e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
DescriptionEncoded by
Cds size261
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791299.0919454-CDS-P-littoralis_Contig622:117729..1179901680791299.0919454-CDS-P-littoralis_Contig622:117729..117990Pylaiella littoralis U1_48CDSP-littoralis_Contig622 117730..117990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791299.1043305-UTR-P-littoralis_Contig622:117990..1181351680791299.1043305-UTR-P-littoralis_Contig622:117990..118135Pylaiella littoralis U1_48UTRP-littoralis_Contig622 117991..118135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig622.10.1prot_P-littoralis_Contig622.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig622 117730..117990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig622.10.1

>prot_P-littoralis_Contig622.10.1 ID=prot_P-littoralis_Contig622.10.1|Name=mRNA_P-littoralis_Contig622.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREVVERKE
ISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ*
back to top

mRNA from alignment at P-littoralis_Contig622:117730..118135-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig622.10.1 ID=mRNA_P-littoralis_Contig622.10.1|Name=mRNA_P-littoralis_Contig622.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=406bp|location=Sequence derived from alignment at P-littoralis_Contig622:117730..118135- (Pylaiella littoralis U1_48)
TCTTCTCATACTTCAGTACAATATTAGTCGGTAAACAACTGGTCGGAAAA
CTGATGGTTGGTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATT
GATGTCTTGAAGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTATGTT
GCCAACAGCTGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTG
CGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGCACATA
GACGTACGGCATCACTTTATCAGGGAAGTGGTAGAGAGGAAGGAGATTTC
GATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGACGAAAG
CAATCAGCAGGGAGTCTTTTGACCTGCACCGTGGTTTTGTGATGAATTTG
CAATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig622:117730..118135-

>mRNA_P-littoralis_Contig622.10.1 ID=mRNA_P-littoralis_Contig622.10.1|Name=mRNA_P-littoralis_Contig622.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig622:117730..118135- (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCTGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCACTTTATCAGGGAAGTGGTAGAGAGGAAGGAG
ATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGACCTGCACCGTGGTTTTGTGATGA
ATTTGCAATGA
back to top