mRNA_P-littoralis_Contig621.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig621.44.1
Unique NamemRNA_P-littoralis_Contig621.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: D7FR54_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR54_ECTSI)

HSP 1 Score: 721 bits (1860), Expect = 8.850e-256
Identity = 372/433 (85.91%), Postives = 402/433 (92.84%), Query Frame = 1 
Query:  355 VGTGEAKGRSIRVEEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEV 1653
            V TGEAK RSIR+EE++CFRRRMGIKV+GEEVADPMESF +MPSA + EDA QTRR LL NVE SAWKEPTPVQMQAVPILV GRDLLAAAPTGSGKTAAFV+PM+LRLG+Q AD + SGVRG+LLAPTRELAAQIHRDVVRLSRGR+L VCLLTKAGA K A A  MDSR ALSGYDIVVSTPMRLVALVRE AV LA+VEM+VLDEADKLFD+G   GGSDKAF+GQVDEVL+ACS+Q+VQRALFSAT+GQQVK+L+ESVLRDP+FL VGT NAGA +IDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGIN DVMHA RTQDQRD+IIQRFRTGEIWVLICTDL+ARGIDFKGVNMV+NYDFPQSAVSYIHRIGRTXXXX HGVAVTLFTESDM+SLRSIANV+RLSGCE+
Sbjct:   22 VETGEAKARSIRLEEVACFRRRMGIKVKGEEVADPMESFSEMPSATTSEDAGQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLGVQRADPQASGVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSRNALSGYDIVVSTPMRLVALVRERAVCLASVEMVVLDEADKLFDAGAASGGSDKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDPIFLTVGTQNAGAADIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINTDVMHASRTQDQRDNIIQRFRTGEIWVLICTDLVARGIDFKGVNMVINYDFPQSAVSYIHRIGRTXXXXXHGVAVTLFTESDMNSLRSIANVIRLSGCEM 454
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A6H5JCM6_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM6_9PHAE)

HSP 1 Score: 608 bits (1569), Expect = 1.770e-213
Identity = 309/374 (82.62%), Postives = 341/374 (91.18%), Query Frame = 1 
Query:  355 VGTGEAKGRSIRVEEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFK 1476
            V TGEAK R IR+EE++CFRRRMGIKV+GEEVADPM SF +MPSA + ++A QTRR LL NVE SAWKEPTPVQMQAVPILV GRDLLAAAPTGSGKTAAFV+PM+LRLG+Q AD + SGVRG+LLAPTRELAAQIHRDVVRLSRGR+L VCLLTKAGA K A A  MDS+ ALSGYDIVVSTPMRLVALVRE A+ LA+VEM+VLDEADKLFD+G   GGSDKAF+GQVDEVL+ACS+Q+VQRALFSAT+GQQVK+L+ESVLRD +FL VGT N+GA +IDQRLVYVGREEGKLLA+RQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGIN DVMHA RTQDQRD+IIQRFRTGEIWVLICTDL+ARGIDFK
Sbjct:   22 VETGEAKARLIRLEEVACFRRRMGIKVKGEEVADPMASFSEMPSASTSKEAAQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLGVQRADPQASGVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSKNALSGYDIVVSTPMRLVALVRERAICLASVEMVVLDEADKLFDAGAASGGSDKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDHIFLTVGTQNSGAADIDQRLVYVGREEGKLLAVRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINTDVMHASRTQDQRDNIIQRFRTGEIWVLICTDLVARGIDFK 395
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A2D4C2B4_PYTIN (RNA helicase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2B4_PYTIN)

HSP 1 Score: 484 bits (1245), Expect = 6.090e-161
Identity = 254/465 (54.62%), Postives = 337/465 (72.47%), Query Frame = 1 
Query:  394 EEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFM 1788
            EE+  FR++M I+V G  V  P+ +F  M    +     + R  LL N+E S +KEPTP+QMQA+P L+ GRD+LA APTGSGKTAAF IPM+  LG      +  G+R V+L+PTRELA QI  +  RLS GRK H+ LL+KA AA      S         +D+V++TP+RLV LV+E  + L+ VEM+ LDEAD+LFD G         FV Q+DE+L+AC++  VQRA+FSAT+ Q V+++A+SVLRDPV +++G  NAGA +I+Q+LV+VG+EEGKL+A++QL+QEGLR P L+F+Q+K+RA  L+HEL+YDGIN   +HA RT++QRD+ I++FR G++WVLICTDLM+RGIDFK VNMV+NYDFPQ AVSYIHRIGRT    R G+AVT FTE DM  LR+IANVM+LSGC+V DWMLT+KK   + R++  +  P R  I TVS YD+ QK H++ M
Sbjct:  172 EEVRLFRKQMNIRVEGTSVPAPIATFDAMKLNAT---QLKMRSVLLHNIEASEYKEPTPIQMQAIPSLLLGRDVLATAPTGSGKTAAFAIPMLANLGAP----QQQGIRAVVLSPTRELAVQIFHEFQRLSAGRKFHIVLLSKATAATMI---SSIKNNCTVNHDLVIATPLRLVHLVQEAKLDLSMVEMICLDEADRLFDMG---------FVEQIDEILAACTHPRVQRAMFSATMLQGVEEMAQSVLRDPVKISIGVKNAGASSIEQKLVFVGKEEGKLVAMKQLIQEGLRLPALLFVQNKERANELYHELLYDGINVGAVHADRTKEQRDETIRQFRAGQVWVLICTDLMSRGIDFKAVNMVINYDFPQDAVSYIHRIGRTGRGGRKGLAVTFFTEDDMAYLRTIANVMKLSGCDVPDWMLTLKKASATKRKQLLKAPPQRKRISTVSGYDL-QKAHKRKM 616
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A225VXV3_9STRA (RNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VXV3_9STRA)

HSP 1 Score: 475 bits (1222), Expect = 2.820e-159
Identity = 257/469 (54.80%), Postives = 340/469 (72.49%), Query Frame = 1 
Query:  394 EEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFMINDS 1800
            E +   RR++GI+V G  V  P+ SF DM    S   A+Q +R LL+N+E S +KEPT VQMQA+P  +  RD+LA APTGSGKTAAF IP++  L        GSG+R ++LAPTR+LA QI  +  RL+ G+KLHV LL+KA AA  A   S    K    +D++++TP+RLV L++E  V L+ VEM+ LDEAD+L + G         FV QVDE+ +AC++ +VQRA+FSAT+ + V++LA++VLRDPV + VGT NAGA  IDQ+LV+VG+EEGKL+A++QL+ EGL+ P L+F+Q+K+RA  L+HEL+YDG+N   +HA RT++QRDD+I+RFRTGE+WVLICTDLM+RG+DFK VNMV+NYDFPQSAVSYIHRIG  XXXX    AVT FTE DM  LR+IANVM++SGCEV DWML++KK   S R++  +  P R  I TVS YD+ QK +R   +  S
Sbjct:    9 EGVQMLRRQLGIRVSGVSVPAPITSFADM-RLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANLAA--GSGTGSGIRSIVLAPTRDLAVQIRTEFTRLAAGKKLHVTLLSKATAATIA---SQTKSKLAVNHDVLIATPLRLVHLIQEAKVDLSTVEMVCLDEADRLLELG---------FVEQVDEIFAACTHAKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGATTIDQKLVFVGKEEGKLVAMKQLLHEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGXXXXXXXXXKAVTFFTEDDMVYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLKAPPTRHRINTVSGYDL-QKSNRLKQMKQS 461
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A1V9ZVZ5_9STRA (RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVZ5_9STRA)

HSP 1 Score: 475 bits (1222), Expect = 3.440e-159
Identity = 257/476 (53.99%), Postives = 337/476 (70.80%), Query Frame = 1 
Query:  394 EEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFMI--NDSKKSAA 1815
            ++I   R+R+ I V G  V DP+  F  M +A S       +  LL N+E S +K PT +QMQA+P ++  RD+L  APTGSGKTAAF IPM+L L     D    G+R ++LAPTRELA QIH +  RLS G+K H+ LL+KA A+  A      ++     YDIV++TP+RLV L+ E ++ L  VEM+ LDEAD+LF+ G         FV Q+DEV +AC+N  +QR +FSAT+ Q V+++A+SVL+DPV + +G  NAGA+ I+QRL++VG+EEGKL+A++QL+QEGL+ PVL+F+Q+KDRAK L+HELVYDGIN   +HA RT++QRD +I+ FRTG +WVLICTDLM+RGIDFKGVNMV+NYDFPQSAVSYIHRIG  XXXX  G AVT FTESDM  LR+IANVM+LSGC+V DWML MKK     R++  +  P R  IETVS YD+++  + + M   N  KK  A
Sbjct:   54 DDIKHLRKRLNIAVWGTVVPDPIVEFAQMKAAKS------IKSVLLTNIESSEYKNPTAIQMQAIPAILQKRDVLGIAPTGSGKTAAFAIPMLLNLETPQQD---HGIRSIVLAPTRELAVQIHGEFQRLSSGKKFHISLLSKASASTMAS----HAKTCTVNYDIVIATPLRLVHLISEQSIPLDKVEMICLDEADRLFEMG---------FVEQIDEVFAACTNPSLQRMMFSATMLQGVEEMAQSVLKDPVKVAIGVKNAGAITINQRLMFVGKEEGKLVAMKQLIQEGLKLPVLMFVQNKDRAKELYHELVYDGINVGAIHADRTKEQRDKVIKDFRTGAVWVLICTDLMSRGIDFKGVNMVINYDFPQSAVSYIHRIGXXXXXXXXGEAVTFFTESDMIYLRTIANVMKLSGCDVPDWMLAMKKASVRQRKQLLKAPPKRHRIETVSGYDLKKAHNHKLMKKHNAEKKKVA 507
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A485LSG4_9STRA (RNA helicase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSG4_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 4.550e-159
Identity = 255/465 (54.84%), Postives = 333/465 (71.61%), Query Frame = 1 
Query:  394 EEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFM 1788
            +++   RRR+ I V+G  V DP+  F  M ++     A   +  +LRN+E S +K PTP+QMQ++P ++ GRD+L  APTGSGKTAAF IPM+L L   PA     G+R V+L PTRELA QIH +  RLS GRK H+ LL+KA AA      S  S+     YDIV++TP+RLV L+    V L  VEM+ LDEAD+LFD G         FV Q+D+V +AC+N  +QR +FSAT+ Q V+++A+SVL+DP+ +++G  NAGA  I QRL++VG+EEGKL+A++QL+QEGL+ PVL+F+Q+KDRAK L+ ELVYDGIN   +HA RT++QRD +I+ FRTG +WVLICTDLM+RGIDFKGVNMV+NYDFPQSAVSYIHRIG  XXXX  G AVT FTESDM  LR+IANVM+LSGC+V DWML +KK     R++  +  P R  IETVS YD+++   R+ M
Sbjct:  189 DDLKALRRRLNISVQGTVVPDPLLEFAHMKTS-----ATALKSVVLRNIEASQYKNPTPIQMQSIPAILKGRDVLGIAPTGSGKTAAFAIPMLLNL-EAPAQ---QGIRSVVLVPTRELAVQIHAEFQRLSAGRKFHIVLLSKASAATI----SSHSKNCTVNYDIVIATPLRLVHLITNDGVKLDQVEMICLDEADRLFDMG---------FVEQIDDVFAACTNPTMQRMMFSATMLQGVEEMAQSVLKDPIKVSIGVKNAGATTIKQRLMFVGKEEGKLVAMKQLIQEGLKLPVLLFVQNKDRAKELYQELVYDGINVGAIHADRTKEQRDKVIKDFRTGTVWVLICTDLMSRGIDFKGVNMVINYDFPQSAVSYIHRIGXXXXXXXXGEAVTFFTESDMVHLRTIANVMKLSGCDVPDWMLNLKKASIRQRKQLLKAPPQRYRIETVSGYDLQKANKRRLM 631
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A8K1CQ63_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ63_PYTOL)

HSP 1 Score: 481 bits (1237), Expect = 5.410e-159
Identity = 251/472 (53.18%), Postives = 345/472 (73.09%), Query Frame = 1 
Query:  394 EEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFMINDSKKS 1809
            EEI  FR++M I+V G  V  P+ +F  M   G+ E   + R  LL+N+E S +KEPTP+QMQA+P ++ GRD+LA APTGSGKTAAF IP++  LG+   +    G+R V+L+PTRELA QI  +  RLS GRK H+ LL+KA AA      S+ S   ++ +DI+++TP+RLV L++E  + L+ VEM+ LDEAD+LFD G         FV Q+DE+L+AC++ ++QRA+FSAT+ Q V+++A+SVLRDP+ +++G  NAGA +I+Q+LV+VG+EEGKL+A++QL+  GL+ P L+F+Q+K+RA  L+HEL+YDGIN   +HA RT++QRD+ +++FRTG++WVLICTDLM+RGIDFK VNMV+NYDFPQ AVSYIHRIGRT    R G AVT FTE DM  LR+IANVM+LSGCEV DWMLT+KK   + R++  +    R  I TVS YD+ QK H++ +    K S
Sbjct:  203 EEIRVFRKQMNIRVDGASVPPPIATFDAMKLVGTQE---KMRSVLLKNIEASEYKEPTPIQMQAIPSMLLGRDVLATAPTGSGKTAAFAIPLLANLGVPKQE----GIRAVVLSPTRELAVQISTEFHRLSAGRKFHIVLLSKATAATMIS--SIKSNCTVN-HDILIATPLRLVHLIQEAKLDLSMVEMVCLDEADRLFDMG---------FVEQIDEILAACTHPKIQRAMFSATMMQGVEEMAQSVLRDPIKISIGVKNAGASSIEQKLVFVGKEEGKLVAMKQLIHSGLKIPALLFVQNKERANELYHELLYDGINVGAVHADRTKEQRDETMRQFRTGQVWVLICTDLMSRGIDFKAVNMVINYDFPQDAVSYIHRIGRTGRGGRQGYAVTFFTEDDMLYLRTIANVMKLSGCEVPDWMLTLKKASANKRKELVKAPLQRKRISTVSGYDL-QKSHKRHLAKSKKHS 654
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A2P4XS83_9STRA (RNA helicase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XS83_9STRA)

HSP 1 Score: 475 bits (1223), Expect = 1.150e-156
Identity = 261/484 (53.93%), Postives = 347/484 (71.69%), Query Frame = 1 
Query:  361 TGEAKGRSIRVEEISCFRRRMGIKVRGEEVADPMESFVDM---PSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFMINDSK 1803
            TG+    S   +E+   RR++GI+V G  V  P+ SF DM   PSA     A+Q +R LL+N+E S +KEPT VQMQA+P  +  RD+LA APTGSGKTAAF IP++  L      A  SG+R ++LAPTR+LA QI  +  RL+ G+KLH+ LL+KA AA  A   S    K    +D++++TP+RLV L++E  V L+ VEM+ LDEAD+L + G         FV QVDE+ +AC++ +VQRA+FSAT+ + V++LA++VLRDPV + VGT NAGA  IDQ LV+VG+EEGKL+A++QL+ EGL+ P L+F+Q+K+RA  L+HEL+YDG+N   +HA RT++QRDD+I+RFRTGE+WVLICTDLM+RG+DFK VNMV+NYDFPQSAVSYIHRIG  XXXX    AVT FTE DM  LR+IANVM++SGCEV DWML++KK   S R++  +  P R  I TVS YD+ QK +R   +  +K
Sbjct:  196 TGKKNPASAEQDEVQMLRRQLGIRVSGVSVPAPITSFADMRLDPSAS----AQQMKRHLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILGNLAA--GSATSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIA---SQTKSKLAVNHDVLIATPLRLVHLIQEAKVDLSTVEMVCLDEADRLLELG---------FVEQVDEIFAACTHAKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQELVFVGKEEGKLVAMKQLLHEGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGXXXXXXXXXKAVTFFTEDDMVYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLKAPPTRHRINTVSGYDL-QKANRLKQMKQAK 660
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: D0N7S6_PHYIT (RNA helicase n=13 Tax=Phytophthora TaxID=4783 RepID=D0N7S6_PHYIT)

HSP 1 Score: 474 bits (1219), Expect = 5.160e-156
Identity = 252/456 (55.26%), Postives = 337/456 (73.90%), Query Frame = 1 
Query:  400 ISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQ 1767
            +   RR++GI+V G  V  P+ SF DM    S   A+Q +R LL+N+E S +KEPT VQMQA+P L+  RD+LA APTGSGKTAAF IP++  L         SG+R ++LAPTR+LA QI  +  RL+ G+KLH+ LL+KA AA  A   S    K    +D++++TP+RLV L++E  V L+ VEM+ LDEAD+L + G         FV QVDE+ +AC++ +VQRA+FSAT+ + V++LA++VLRDPV + VGT NAGA  IDQ+LV+VG+EEGKL+A++QL+Q+GL+ P L+F+Q+K+RA  L+HEL+YDG+N   +HA RT++QRDD+I+RFRTGE+WVLICTDLM+RG+DFK VNMV+NYDFPQSAVSYIHRIG  XXXX    AVTLFTE DM  LR+IANVM++SGCEV DWML++KK   S R++  +  P R  I TVS YD+++
Sbjct:  218 VQMLRRQLGIRVSGVSVPAPITSFADM-RLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSLLLRRDVLATAPTGSGKTAAFAIPILANLAA--GSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIA---SQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG---------FVEQVDEIFAACTHPKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQKLVFVGKEEGKLVAMKQLLQQGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGXXXXXXXXXKAVTLFTEDDMVYLRTIANVMKISGCEVPDWMLSLKKASVSKRKELLKAPPMRHRINTVSGYDLQR 658
[Close]
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Match: A0A024TW13_9STRA (RNA helicase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW13_9STRA)

HSP 1 Score: 471 bits (1213), Expect = 6.530e-156
Identity = 252/470 (53.62%), Postives = 338/470 (71.91%), Query Frame = 1 
Query:  379 RSIRVEEISCFRRRMGIKVRGEEVADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILVGGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTRELAAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVSTPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDEVLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGINADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNYDFPQSAVSYIHRIGRTXXXXRHGVAVTLFTESDMDSLRSIANVMRLSGCEVADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFM 1788
            +S   ++I   RRR+ I V G  V DP+  F  M +     +A   +  +LRN+E S +K PTP+QMQ++P ++  RD+L  APTGSGKTAAF IPM+L LG    D RG  +R V+L PTRELA QIH +  RLS GRK H+ LL+KA AA      S  S+     YDIV++TP+RLV L+ +  V+L  V+M+ LDEAD+LF+ G         FV Q+D++ +AC+N ++QR +FSAT+ Q V+++A+SVL+DP+ +++GT NAGA  I Q+L++VG+EEGKL+A++QL+QEGL+ PVL+F+Q+KDRAK L+ ELVYDGIN   +HA RT++QRD +I+ FRTG +WVLICTDLM+RGIDFKGVNMV+N+DFPQSAVSYIHRIGR XXXX  G AVT FTE+DM  LR+IANVM+LSGC+V  WML +KK     R++  +  P R  IETVS YD+++   R+ M
Sbjct:  188 KSSHSDDIKALRRRLNIYVEGTVVPDPILEFAQMKT-----NATALKAVVLRNIEESQYKNPTPIQMQSIPAILKQRDVLGIAPTGSGKTAAFAIPMLLNLGAP--DVRG--IRSVVLVPTRELAVQIHAEFQRLSVGRKFHIVLLSKASAATI----SSHSKTCTVNYDIVIATPLRLVHLIHKENVTLDTVDMICLDEADRLFEMG---------FVEQIDDIFAACTNPKMQRMMFSATMLQGVEEMAQSVLKDPIKISIGTKNAGASTITQKLMFVGKEEGKLVAMKQLIQEGLKLPVLLFVQNKDRAKELYQELVYDGINVGAIHADRTKEQRDKVIKDFRTGVVWVLICTDLMSRGIDFKGVNMVINFDFPQSAVSYIHRIGRXXXXXXPGEAVTFFTENDMVYLRTIANVMKLSGCDVPPWMLNLKKASMRKRKQLLKAPPERHRIETVSGYDLQKANKRRLM 635
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig621.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR54_ECTSI8.850e-25685.91RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JCM6_9PHAE1.770e-21382.62RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A2D4C2B4_PYTIN6.090e-16154.62RNA helicase (Fragment) n=1 Tax=Pythium insidiosum... [more]
A0A225VXV3_9STRA2.820e-15954.80RNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A1V9ZVZ5_9STRA3.440e-15953.99RNA helicase n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A485LSG4_9STRA4.550e-15954.84RNA helicase n=1 Tax=Aphanomyces stellatus TaxID=1... [more]
A0A8K1CQ63_PYTOL5.410e-15953.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XS83_9STRA1.150e-15653.93RNA helicase n=2 Tax=Phytophthora palmivora var. p... [more]
D0N7S6_PHYIT5.160e-15655.26RNA helicase n=13 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A024TW13_9STRA6.530e-15653.62RNA helicase n=1 Tax=Aphanomyces invadans TaxID=15... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig621contigP-littoralis_Contig621:140787..146421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR54
Preferred nameDDX52
PFAMsDEAD,Helicase_C
Model size1836
Max annot lvl2759|Eukaryota
KEGG koko:K14779,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048254,GO:0051179,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Exons6
Evalue1.45e-256
EggNOG OGsKOG0344@1|root,KOG0344@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size1836
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig621.44.1prot_P-littoralis_Contig621.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig621 140787..146421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791298.6898715-CDS-P-littoralis_Contig621:140786..1419021680791298.6898715-CDS-P-littoralis_Contig621:140786..141902Pylaiella littoralis U1_48CDSP-littoralis_Contig621 140787..141902 +
1680791298.7121708-CDS-P-littoralis_Contig621:142170..1423711680791298.7121708-CDS-P-littoralis_Contig621:142170..142371Pylaiella littoralis U1_48CDSP-littoralis_Contig621 142171..142371 +
1680791298.7298982-CDS-P-littoralis_Contig621:142539..1426051680791298.7298982-CDS-P-littoralis_Contig621:142539..142605Pylaiella littoralis U1_48CDSP-littoralis_Contig621 142540..142605 +
1680791298.7468004-CDS-P-littoralis_Contig621:142841..1429341680791298.7468004-CDS-P-littoralis_Contig621:142841..142934Pylaiella littoralis U1_48CDSP-littoralis_Contig621 142842..142934 +
1680791298.757336-CDS-P-littoralis_Contig621:143071..1432451680791298.757336-CDS-P-littoralis_Contig621:143071..143245Pylaiella littoralis U1_48CDSP-littoralis_Contig621 143072..143245 +
1680791298.7698138-CDS-P-littoralis_Contig621:146235..1464211680791298.7698138-CDS-P-littoralis_Contig621:146235..146421Pylaiella littoralis U1_48CDSP-littoralis_Contig621 146236..146421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig621.44.1

>prot_P-littoralis_Contig621.44.1 ID=prot_P-littoralis_Contig621.44.1|Name=mRNA_P-littoralis_Contig621.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=612bp
MSSRELLEMLGSGAAFGGKARQPVSKSQEDEKKPPVNFFAAAGSPRASGT
KRRRAPIHGQKAGCSAATQALVSDVGSKVVARVSSKGKNCVAELALFAKS
ANHASASEGKPTDPVGREVGTGEAKGRSIRVEEISCFRRRMGIKVRGEEV
ADPMESFVDMPSAGSGEDARQTRRTLLRNVEGSAWKEPTPVQMQAVPILV
GGRDLLAAAPTGSGKTAAFVIPMVLRLGMQPADARGSGVRGVLLAPTREL
AAQIHRDVVRLSRGRKLHVCLLTKAGAAKTAGAASMDSRKALSGYDIVVS
TPMRLVALVREGAVSLANVEMLVLDEADKLFDSGGTGGGSDKAFVGQVDE
VLSACSNQEVQRALFSATIGQQVKDLAESVLRDPVFLNVGTDNAGAVNID
QRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAKALFHELVYDGI
NADVMHAGRTQDQRDDIIQRFRTGEIWVLICTDLMARGIDFKGVNMVVNY
DFPQSAVSYIHRIGRTGRAGRHGVAVTLFTESDMDSLRSIANVMRLSGCE
VADWMLTMKKERRSDRRKRERGAPHRDGIETVSKYDIRQKRHRQFMINDS
KKSAALGLNKK*
back to top

mRNA from alignment at P-littoralis_Contig621:140787..146421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig621.44.1 ID=mRNA_P-littoralis_Contig621.44.1|Name=mRNA_P-littoralis_Contig621.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5635bp|location=Sequence derived from alignment at P-littoralis_Contig621:140787..146421+ (Pylaiella littoralis U1_48)
ATGTCCTCCCGTGAGCTGCTAGAGATGCTGGGAAGCGGTGCGGCGTTCGG
TGGAAAGGCACGGCAACCGGTGAGCAAAAGCCAGGAAGACGAAAAGAAAC
CTCCAGTCAATTTTTTCGCTGCCGCCGGCTCCCCCCGTGCTTCTGGGACA
AAAAGACGGCGAGCGCCCATTCATGGGCAAAAAGCGGGGTGTTCAGCAGC
AACTCAAGCTCTTGTGAGCGATGTGGGATCAAAAGTGGTTGCCAGGGTTT
CCTCCAAAGGAAAAAACTGTGTCGCGGAATTGGCGCTGTTCGCCAAGAGC
GCAAACCACGCATCGGCAAGTGAAGGCAAACCAACAGATCCTGTCGGCCG
CGAGGTGGGGACGGGGGAAGCGAAAGGCAGGTCAATTCGTGTCGAAGAAA
TCTCGTGCTTTCGCCGGAGGATGGGCATCAAAGTGAGGGGTGAAGAAGTG
GCGGACCCGATGGAATCGTTTGTGGACATGCCGTCAGCTGGGAGTGGGGA
AGATGCGCGGCAGACGAGACGCACGCTTTTGCGAAATGTGGAGGGGTCCG
CATGGAAGGAACCAACGCCTGTGCAGATGCAAGCAGTCCCTATCCTCGTT
GGGGGGCGGGACTTGCTTGCAGCGGCCCCAACGGGCTCCGGAAAGACCGC
TGCGTTCGTGATACCCATGGTGCTCAGGCTTGGAATGCAGCCAGCAGACG
CTAGAGGGTCTGGTGTACGAGGCGTCTTGCTAGCCCCGACCCGTGAGCTT
GCGGCCCAGATTCATCGCGATGTTGTTCGACTCTCGCGCGGGCGAAAGTT
GCACGTGTGCCTCCTGACGAAAGCCGGCGCAGCCAAAACCGCTGGGGCGG
CCAGTATGGACAGTAGGAAGGCACTTTCGGGTTATGATATCGTCGTGTCG
ACACCTATGCGGCTTGTGGCTCTCGTACGGGAAGGAGCAGTGTCCCTAGC
AAACGTGGAGATGTTAGTTCTCGACGAAGCAGATAAACTCTTCGACTCTG
GGGGAACTGGTGGTGGCAGCGACAAAGCGTTCGTTGGACAGGTGGACGAG
GTGCTATCGGCCTGCTCCAATCAAGAAGTACAGAGGGCCTTGTTTAGCGC
GACGATCGGGCAGCAGGTGAGCTTAGGCTTGTCCTGGATCGGTAGTGCAG
TTCAATGTACGTGCTACGTTTTTCGTTTTAACCGTCTCGGTGTGGTCATC
ACATTACCAATGCCATCACGTACGGGTTTATATGTGTGTTGTCCCATATT
CTCTGGCACACTAGTCTGCACATATGTGTTCAACGTTGTTTGTGGTCAAA
AGTGCCAGCTCGAGGTACTCTCCCCTGGGCCAATCAGACACCACGGGCTT
CGTTTCGTTTCTTTATCTTGTCGTTTCAAACCAGGTGAAAGATCTGGCAG
AGAGCGTCCTCCGCGACCCTGTCTTTCTTAACGTTGGCACCGACAATGCT
GGGGCGGTCAACATTGACCAACGGCTGGTCTATGTCGGTAGGGAGGAGGG
TAAACTGCTGGCCATCCGGCAGCTGGTTCAAGAGGGACTGCGCCCCCCTG
TGCTCGTTTTTCTGCAGTCCAAAGACCGTGCCAAGGTGCTAAAGTCGTCC
ACTTTGTTCGCCAAGAGTTCCGTTTGGGGGGGTTGCCGTTACTGCGGACA
AGAAGGGTTTACCCGCACGCGTACAAGCGGTAATACGGTTCGCTGCTCTC
GTGTTGTTTGCTCTAACCGCCTGGTATCGACATACGTCTTTATTTTCCGG
CAGGCACTTTTTCACGAACTTGTGTACGACGGCATCAATGCGGACGTAAT
GCACGCCGGTCGAACCCAGGTGCGCAGCATGATGGTGGTAACACGACTGG
ACCCAGTACTCCTGCCCCAAACCAGGAAACTGCTGTTTTTGAATATGGAC
GAAGTGGACCGAAGTGATTCCACTATCCGCAATGTGTTTTACCGCGCTGT
ATCCTTTGGAATTATCCGTATATGTTTATTACGACTAGCGGCATCTATTT
GCCCAAATCTTTACCCACACGGCCATATTTTTTCGGTTTGTTTTTTGTAT
TTCAGGACCAGCGTGATGATATCATTCAACGCTTCAGGACTGGTGAGATC
TGGGTCCTCATCTGCACGGATCTCATGGCGCGAGGCATCGATTTCAAGGT
GGGGTGCGTTTGCCGACAAAAGAGGGCGACGTAGCATTGTGTTCTCGAGG
GGTTCCCCTTGTGTAACCCCACGCATCACGTCTAACAACCTGTCGTGTGA
CTTTCCCTGTTGCCCTTCCGTGTCCGTTGTGTCAGGGCGTCAACATGGTT
GTCAACTACGATTTCCCTCAGAGCGCCGTATCGTACATCCACCGTATCGG
AAGAACTGGCCGAGCTGGTCGCCATGGCGTAGCGGTGACCCTTTTCACCG
AGTCAGACATGGACTCTCTTCGCAGCATCGCGAATGTCATGCGGCTAAGT
GGATGCGAGGTGAGCCCTAGCCCTTCGAGAGAGGTGTGACTTGGCAAGCC
CATTTCTCGCCCATCTCGACTGCGGCATATGGTGGTTTGTATCCAATGGC
GCCACACCCCTTTTTTTAGAATTGATGGCACGTGGTCTAGTTTATTAGCC
AACGTCCTGGTCTCTAAGAGATTTTCTCGGGGAATGTGGATAAATATATT
ATTGCTGTGCATGAATGTAGTTACAGCAGCAGCAAACAGCAGCAGCATCA
CGATTGATTATGTATGCATGTGCGTGGGGACAGCGCGTTGTCAAAAGCGC
GAGCAAAGAAAGGTTGACCCCAAGAACTTGTTCATTAGAGGGTGGAGAAC
ATCGCTTCCCATAACACATACCGAAGGGTCCCCGTGTATCAGTATCGAGT
GCCGGGTATCCCAAAGAGCTGTCGTGTCGTTTTGACTCGGCTTCGCCGCC
GAAGGTGGATTGTTCGAGCTCTGTTTATTTCAGCTATCCTTTAAAGCCTG
GCGCGTTATCGGTGGTGGTGCTATTGGCGCAACCCGGGGAACAGAGGGAC
GATCCAGCGGTACTACTCCTGCCATGTCGATGGCCAAATCACTCGTGTTC
GCTGCGAATAACTCTCGTCGCGCGCGCGGTGGGCTCGACGATGATGACAA
CACCCTGGGCCTCCTCTGCTGATTCGGCGATAATCTACCATGACGGTTGC
TGCCATGAGACCCTCCTCTACTTGACGCCATGGAAAGCGACAATAAAATT
CCAAGAATGCAAGCCCACAGCAAGGATTGCATACTTCAGCGCCGACATAC
AACACACCTTGCTGCACAGAACACTCAACGAATCTAGCAGTACGCCCGTA
AAGGCACAGTAGGAAGGTAGCCCGCTTTGTTTGCAGACAACCGCTGTTGT
AGTAGCTCTCACTGCTACTGATATTTCATGGGTTTACATGCAGCAGCACT
GCTGTAGCAGAGAGTAGAAACTCACAAAAAAAAGCCATCTGCTGCTGTAT
GACTGCCTCTTGCCGCTGTGCTGCTTCCTGCTGCTGCTTCCTGCAGTAGC
TGACGCACCTTTGACCAAACAATCACCGGTTCAACACATGTTTGTGTGGG
TGCCGGGTATCGTCGTTATTGGCCACCGTCGTCGCTAGCAAATGTTCAGC
CGTTTCGCACTGCTAATAATGCCTCTGTATTCCCTCAAAAATAAACACAG
AAGAAAGACCATTAAAAAAAATAAAATGTCATCAAAGAGAGGAAGAAAAC
CCACGATTTTGGCTTTTTGAACGGATTTTCCGAATGCACAATTGTACTTC
GAAGTTAAACACCTCTTACAGCTTGCTTTAGCTCAGAACAACCACCACCA
TCCATATTTCGTGAGTTTATAGCAACAAGCAGTAGTAGTGTACCAGGTAC
CGGAGACCTACCTGCACAACAACGAAAAAAGCTGTCTACAGCAGCAGCAG
TAGAGCCTGTGCTGCTGCGCTGCTTCTTGCCGCGCTTGTCACAACACAAA
AAAAAAAAGGATTTCAAGAAACACGGAGCTTCTTTCATTTTACAAGTATT
ACATGAATGAGATGAATGCATGATCAACACCACCCTGCTTGCTCTGCTGT
GTACACCAAACACACACCATCCATGCAAGCAGCAGGAGAATGGTAAGCTT
TGCAGACAGGCGTTATCTACTACTAATGCTACTCCTGCTGCTGCTGCCGT
AACAGACATTGGTCTTTCATGATTTTATAGCAGTAGCAGCCGTGGTGATG
CACCACAAGAAGACCCTAAAGAACCTGTCTACTACTGCATGCGGCTGTGA
TGTACATCTTGCCACGTCCGTTTCACAAATCAAACATAATAGTACTTCGT
AATTCGTACTTACAAGTTAAAAAGCCGAGAGAGACGAGAGCATCGAGATA
GATGTACACCCTCCACCCGATGCTCGTGACCGGTGCAACGGAAGCGTATG
AGATTCGGTATGCATGTTGACTGCGTGTGCTTGCATGGGCTCCCGAGATT
TGGCGTCAAGATACGTCCCCGTTGTCGAGAACGACATACAAGGGGAAAAA
GTGCGTGGGAACGAGCATGGTGTTCGAGAGGCTTGACTTTTTACCTCTAT
AAGAAATAGTGACACTTTTTTATTTTTGCTTTTAGAAGCTCTCAGAGAAC
CTAGGGTTCTCTTAGAGAACTGATGCTGTAGGGATGTCGCGCCGTGAAAA
ATCGCCAGGGATGCGTGACCTAACACAATCCCCGTGGCCTCTGAACTTTA
ACTCCCTTCGCAGCAGCTTGGTTTATCCCGAGGTGACAGGGTGACATGTT
GGCGCGTGAAAATTACGAAACTAATCAACATACTTCCTCTGCATCATAAG
TATAGTCCGTTATGGGCGCGTAGTCGTTAGGGTACTTACACGTTGACGTT
TAGCCTTTGGCCGGGTGCGTTGGAAAGGCAAAGCACATGCAAAGCTGACT
AAAAAAAAAAAATCGGAGACCGTGTTATACACTAATATTAGGTTAAAATA
TGCCCAATTTGGCTCTTTTTGAGAATATTTTTTGAGGACTTTTTTGAGAT
TGGTACCCCCAAGTGTCTTGGTTTTAGTGTGGGACCACCAAGTGTCTTGA
TTTTAGTGGGGGGTCACTATTATACTGGTTTTAGTAAGGGGACGCGATAT
GGATGGTTGAGTATAGCGAGGGTTAGCTTTAGGGTTGGGATAATTCTTGT
GTTTTTTTGGCGGGGTTTCGGCTTGGTGCCCCACCCGTCCCTCCTCCTGA
AAAGGGGCAAAATATGGCCGTTTTTGGGCCGACTCAATGTTTTCCGGCCG
TTCGGCCGTATGGTTCAAGCGCCGGCTAAAAAAAAAAGGTTTTTCTTGCT
CAAAAAACGCCGGAGAATTAAAAAAAAAAAACGGAGAACAGATCGGACAC
CGTTAACGGTCTCTCCTCACATAACGGACTATACTTATGATACAGAGGAA
GTATAATATGAAACAGCTCACATCGTCCTTTCATCGGCTACTCCCGCAGG
TCGCGGATTGGATGCTGACCATGAAAAAGGAGCGGAGATCTGACCGCCGA
AAGCGCGAAAGGGGAGCGCCTCACCGCGACGGCATCGAAACTGTGTCGAA
GTACGACATCCGGCAAAAGCGCCACCGCCAGTTTATGATCAACGACAGCA
AGAAATCTGCAGCGCTTGGCTTAAATAAAAAGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig621:140787..146421+

>mRNA_P-littoralis_Contig621.44.1 ID=mRNA_P-littoralis_Contig621.44.1|Name=mRNA_P-littoralis_Contig621.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1836bp|location=Sequence derived from alignment at P-littoralis_Contig621:140787..146421+ (Pylaiella littoralis U1_48)
ATGTCCTCCCGTGAGCTGCTAGAGATGCTGGGAAGCGGTGCGGCGTTCGG
TGGAAAGGCACGGCAACCGGTGAGCAAAAGCCAGGAAGACGAAAAGAAAC
CTCCAGTCAATTTTTTCGCTGCCGCCGGCTCCCCCCGTGCTTCTGGGACA
AAAAGACGGCGAGCGCCCATTCATGGGCAAAAAGCGGGGTGTTCAGCAGC
AACTCAAGCTCTTGTGAGCGATGTGGGATCAAAAGTGGTTGCCAGGGTTT
CCTCCAAAGGAAAAAACTGTGTCGCGGAATTGGCGCTGTTCGCCAAGAGC
GCAAACCACGCATCGGCAAGTGAAGGCAAACCAACAGATCCTGTCGGCCG
CGAGGTGGGGACGGGGGAAGCGAAAGGCAGGTCAATTCGTGTCGAAGAAA
TCTCGTGCTTTCGCCGGAGGATGGGCATCAAAGTGAGGGGTGAAGAAGTG
GCGGACCCGATGGAATCGTTTGTGGACATGCCGTCAGCTGGGAGTGGGGA
AGATGCGCGGCAGACGAGACGCACGCTTTTGCGAAATGTGGAGGGGTCCG
CATGGAAGGAACCAACGCCTGTGCAGATGCAAGCAGTCCCTATCCTCGTT
GGGGGGCGGGACTTGCTTGCAGCGGCCCCAACGGGCTCCGGAAAGACCGC
TGCGTTCGTGATACCCATGGTGCTCAGGCTTGGAATGCAGCCAGCAGACG
CTAGAGGGTCTGGTGTACGAGGCGTCTTGCTAGCCCCGACCCGTGAGCTT
GCGGCCCAGATTCATCGCGATGTTGTTCGACTCTCGCGCGGGCGAAAGTT
GCACGTGTGCCTCCTGACGAAAGCCGGCGCAGCCAAAACCGCTGGGGCGG
CCAGTATGGACAGTAGGAAGGCACTTTCGGGTTATGATATCGTCGTGTCG
ACACCTATGCGGCTTGTGGCTCTCGTACGGGAAGGAGCAGTGTCCCTAGC
AAACGTGGAGATGTTAGTTCTCGACGAAGCAGATAAACTCTTCGACTCTG
GGGGAACTGGTGGTGGCAGCGACAAAGCGTTCGTTGGACAGGTGGACGAG
GTGCTATCGGCCTGCTCCAATCAAGAAGTACAGAGGGCCTTGTTTAGCGC
GACGATCGGGCAGCAGGTGAAAGATCTGGCAGAGAGCGTCCTCCGCGACC
CTGTCTTTCTTAACGTTGGCACCGACAATGCTGGGGCGGTCAACATTGAC
CAACGGCTGGTCTATGTCGGTAGGGAGGAGGGTAAACTGCTGGCCATCCG
GCAGCTGGTTCAAGAGGGACTGCGCCCCCCTGTGCTCGTTTTTCTGCAGT
CCAAAGACCGTGCCAAGGCACTTTTTCACGAACTTGTGTACGACGGCATC
AATGCGGACGTAATGCACGCCGGTCGAACCCAGGACCAGCGTGATGATAT
CATTCAACGCTTCAGGACTGGTGAGATCTGGGTCCTCATCTGCACGGATC
TCATGGCGCGAGGCATCGATTTCAAGGGCGTCAACATGGTTGTCAACTAC
GATTTCCCTCAGAGCGCCGTATCGTACATCCACCGTATCGGAAGAACTGG
CCGAGCTGGTCGCCATGGCGTAGCGGTGACCCTTTTCACCGAGTCAGACA
TGGACTCTCTTCGCAGCATCGCGAATGTCATGCGGCTAAGTGGATGCGAG
GTCGCGGATTGGATGCTGACCATGAAAAAGGAGCGGAGATCTGACCGCCG
AAAGCGCGAAAGGGGAGCGCCTCACCGCGACGGCATCGAAACTGTGTCGA
AGTACGACATCCGGCAAAAGCGCCACCGCCAGTTTATGATCAACGACAGC
AAGAAATCTGCAGCGCTTGGCTTAAATAAAAAGTAG
back to top