mRNA_P-littoralis_Contig620.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig620.1.1
Unique NamemRNA_P-littoralis_Contig620.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.110e-34
Identity = 78/188 (41.49%), Postives = 112/188 (59.57%), Query Frame = 1
Query:    4 EEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDLRSAARKRERDDAAHALVMAGTGWHGGGRG 567
            E EVKVG +  ++  L R F  +V+ KS   WNI++ K++Y PI +L++AC SPQ  W+I  +FY+EKK+ E+SRLE +++++E  + ES Q Y+ RAEA+R RL  +    D T   K I RGL S +Y + K IL    VL L  +E V+  A  ++     K ER +   AL  +G G  GGG G
Sbjct:   17 EVEVKVGKRGVNVAELRRPFGNDVIDKSFKPWNILMSKVLYPPIQSLILACESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDYIARAEALRLRLASVGMIKDETDANKEIARGLPS-SYVVHKGILLAHDVLTLRTLETVVRDAHVEMERERSKGERREVELALAASGMGRRGGGSG 203          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.440e-33
Identity = 78/186 (41.94%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    4 EEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDLRSAARKRERDDAAHALVMAGTGWHGGG 561
            E EVKVG +   +G L R F  EVV KS   WNI+I K++Y PI +L++A  SPQ  W+I  +FY+EKK+ E+SRLE +++++EM   ES Q Y+  +EA+R RL  +    D T+  K I RGL S  Y ++K  L    VL L  +E V+  A  ++     K ER +   AL  +G G  GGG
Sbjct:  151 EVEVKVGKRGVSIGDLRRLFGNEVVDKSFKLWNILISKVLYPPIQSLILAFESPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDYIAHSEALRLRLASVGTIKDETYANKDIARGLPSSLYAVQKGNLLAYDVLTLHTLETVVRDAHVEMERERSKGERREVELALAASGMGRSGGG 336          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5JW99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW99_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.830e-32
Identity = 75/176 (42.61%), Postives = 103/176 (58.52%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDLRSAARKRERDDAAHALVMAG 540
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y +++ IL    V+ L  +E V+  A  ++              ALV +G
Sbjct:  248 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQEGILQASDVVTLHALETVVRDAHMEMEXXXXXXXXXXXXXALVASG 422          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.350e-32
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I  KFY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  162 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 316          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.520e-32
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I  KFY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  162 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTKFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 316          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.110e-32
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  162 VKVGKRGVDLAELRGIFGTDVVDKSLKVWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 316          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5K2E9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.030e-31
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  162 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 316          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.150e-31
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  308 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 462          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.150e-31
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I   FY+EKKE E++RLE E+  +EM   E+ Q Y+ R+EA+R RL  +    DTTH YK +VRGL  P+Y ++K IL    V+ L  +E V+  A  ++
Sbjct:  162 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNFYQEKKESEKTRLEQEWLALEMRESENPQDYIARSEALRLRLASVGTIKDTTHAYKDVVRGL-PPSYAVQKGILLASDVVTLHALETVVRDAHMEM 316          
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Match: A0A6H5JC89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC89_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.060e-28
Identity = 67/156 (42.95%), Postives = 96/156 (61.54%), Query Frame = 1
Query:   13 VKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMMACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAEAIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIEYVMNQADRDL 480
            VKVG +  DL  L   F  +VV KS+  WNIII K++Y PI  L+MAC SPQ  W+I    Y+EKKE E++RLE ++  +EM   E+ Q Y+ R+EA++ RL  +    DTTH YK +VR L  P++ ++K IL    V+ L  +E V+  A  ++
Sbjct:   27 VKVGKRGVDLAELRGIFGTDVVDKSLKLWNIIISKILYPPIQNLIMACESPQQGWKIVTNIYQEKKESEKTRLEQKWLALEMRESENPQDYMARSEALQLRLASVGTIKDTTHAYKDVVRAL-PPSFAVQKGILLASDVVTLHALETVVRDAHMEM 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig620.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KDM9_9PHAE1.110e-3441.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHU8_9PHAE1.440e-3341.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW99_9PHAE1.830e-3242.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL48_9PHAE2.350e-3246.79Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBD4_9PHAE2.520e-3246.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5I8_9PHAE8.110e-3246.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2E9_9PHAE1.030e-3146.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.150e-3146.15Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE1.150e-3146.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC89_9PHAE1.060e-2842.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig620contigP-littoralis_Contig620:8082..8694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size613
Hectar predicted targeting categoryother localisation
Exons1
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791296.1301653-CDS-P-littoralis_Contig620:8082..86941680791296.1301653-CDS-P-littoralis_Contig620:8082..8694Pylaiella littoralis U1_48CDSP-littoralis_Contig620 8083..8694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig620.1.1prot_P-littoralis_Contig620.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig620 8083..8694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig620.1.1

>prot_P-littoralis_Contig620.1.1 ID=prot_P-littoralis_Contig620.1.1|Name=mRNA_P-littoralis_Contig620.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
QEEEVKVGLQEADLGALAREFDEEVVKKSVIAWNIIIEKMMYRPILTLMM
ACGSPQAAWRIFLKFYEEKKEHERSRLEDEFRDVEMLSGESSQSYLVRAE
AIRQRLVELDRNSDTTHDYKHIVRGLLSPTYDIEKRILAGRQVLNLSEIE
YVMNQADRDLRSAARKRERDDAAHALVMAGTGWHGGGRGQPWHGRGAGRG
GQLE
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mRNA from alignment at P-littoralis_Contig620:8082..8694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig620.1.1 ID=mRNA_P-littoralis_Contig620.1.1|Name=mRNA_P-littoralis_Contig620.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=613bp|location=Sequence derived from alignment at P-littoralis_Contig620:8082..8694- (Pylaiella littoralis U1_48)
CAAGAAGAGGAAGTGAAGGTTGGGTTGCAGGAAGCTGACCTAGGAGCACT GGCTAGAGAGTTCGATGAAGAGGTGGTGAAAAAGTCGGTAATCGCATGGA ACATCATCATTGAAAAAATGATGTACCGACCAATTCTAACACTGATGATG GCTTGCGGAAGCCCGCAAGCGGCATGGCGAATCTTTCTGAAGTTTTATGA GGAGAAGAAGGAGCACGAGAGGAGTCGGTTAGAGGATGAATTCAGAGATG TTGAGATGTTGTCCGGAGAGAGCAGTCAGTCATATCTAGTTCGAGCAGAA GCAATTCGACAGCGGCTTGTTGAACTAGACCGCAATTCAGACACTACCCA TGACTACAAACATATTGTCCGTGGCCTGTTGTCTCCCACGTACGATATCG AAAAGCGAATCCTCGCGGGTAGGCAGGTGTTGAACCTGAGCGAGATCGAG TACGTGATGAATCAAGCTGATCGAGACCTGAGGAGCGCGGCGAGGAAGAG GGAGCGGGACGACGCAGCTCACGCCCTCGTCATGGCCGGCACGGGTTGGC ATGGCGGGGGAAGGGGGCAACCGTGGCATGGCAGAGGCGCTGGAAGAGGT GGTCAGCTGGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig620:8082..8694-

>mRNA_P-littoralis_Contig620.1.1 ID=mRNA_P-littoralis_Contig620.1.1|Name=mRNA_P-littoralis_Contig620.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig620:8082..8694- (Pylaiella littoralis U1_48)
CAAGAAGAGGAAGTGAAGGTTGGGTTGCAGGAAGCTGACCTAGGAGCACT
GGCTAGAGAGTTCGATGAAGAGGTGGTGAAAAAGTCGGTAATCGCATGGA
ACATCATCATTGAAAAAATGATGTACCGACCAATTCTAACACTGATGATG
GCTTGCGGAAGCCCGCAAGCGGCATGGCGAATCTTTCTGAAGTTTTATGA
GGAGAAGAAGGAGCACGAGAGGAGTCGGTTAGAGGATGAATTCAGAGATG
TTGAGATGTTGTCCGGAGAGAGCAGTCAGTCATATCTAGTTCGAGCAGAA
GCAATTCGACAGCGGCTTGTTGAACTAGACCGCAATTCAGACACTACCCA
TGACTACAAACATATTGTCCGTGGCCTGTTGTCTCCCACGTACGATATCG
AAAAGCGAATCCTCGCGGGTAGGCAGGTGTTGAACCTGAGCGAGATCGAG
TACGTGATGAATCAAGCTGATCGAGACCTGAGGAGCGCGGCGAGGAAGAG
GGAGCGGGACGACGCAGCTCACGCCCTCGTCATGGCCGGCACGGGTTGGC
ATGGCGGGGGAAGGGGGCAACCGTGGCATGGCAGAGGCGCTGGAAGAGGT
GGTCAGCTGGAG
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