mRNA_P-littoralis_Contig62.56.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.56.4
Unique NamemRNA_P-littoralis_Contig62.56.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: D8LU90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90_ECTSI)

HSP 1 Score: 622 bits (1605), Expect = 2.140e-207
Identity = 321/523 (61.38%), Postives = 370/523 (70.75%), Query Frame = 2 
Query:  167 RRRSRLEE-NLANSGRSSTRQYLFYGTIGLLSLALPAALALFGHRFLPSNAPADSGATPYSVIDPTRSQDDTQRQPHPGPGRAVPADLRAGAVPPQVVWRGIASGIASRPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDGHRGSLPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVP-RAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGEVSGGSRRFTDLSKKQVEADPYS 1729
            RRRS+LEE +LA +     R+Y+    + ++SLALPAAL      F PS      G                         R    D  A        W GIA GIA++P S  DIHVVFSTDCSPYQNYQ+ +LF SAEMVGQ+G +TRVASGCT +E   L+  M +QPERF VHFTPD+S DP TGE+F+FYNKPNG+AH+LK+AD P+ EAV+ALVDPDMIFMSPLTP V D +KMLWH+ +   GP WV EG+PVGQ+YGLGG WTTW DL EIT  LG DSPA  V+  +A   Y VGPPY+MHPRDWARVLDLWVALSPKV+KGH GILAEMY FCIAAAH+GLRHRVAYGLMVSD  M   EGW +VD +GT  C+   VD  RGSLPPIVHYCQMYRVGTFMWGKRH++H  FF C SDSLELPPP YL  PM  +RVHP   RA  GE  +  E V   TG+RQ YA+CAVLRAMNEAL  YK RYC  G+VSGG RRFTDLS++Q++AD YS
Sbjct:    5 RRRSKLEEGHLAGASVWPVRRYVLLTAVAVISLALPAALT-----FRPSATRRGGGK------------------------RRANVDHDA--------WLGIAPGIAAKPASADDIHVVFSTDCSPYQNYQATMLFHSAEMVGQKGRVTRVASGCTRDERLELEVFMMRQPERFHVHFTPDYSFDPETGERFMFYNKPNGMAHYLKSADYPVHEAVVALVDPDMIFMSPLTPFVGDADKMLWHDGDAGEGPDWVEEGSPVGQYYGLGGVWTTWDDLREITENLGEDSPARAVSTEEAISGYPVGPPYMMHPRDWARVLDLWVALSPKVHKGHPGILAEMYGFCIAAAHIGLRHRVAYGLMVSDAGMPGKEGWPLVDQMGTSVCDPESVDHRRGSLPPIVHYCQMYRVGTFMWGKRHRTHQTFFGCHSDSLELPPPDYLAGPMAEVRVHPRRGRAQLGEQ-AEPERVPAVTGMRQGYAMCAVLRAMNEALVKYKYRYCERGDVSGGVRRFTDLSREQLDADEYS 489
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A836CDP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP3_9STRA)

HSP 1 Score: 342 bits (878), Expect = 2.990e-102
Identity = 192/435 (44.14%), Postives = 249/435 (57.24%), Query Frame = 2 
Query:  464 GIASGIASRPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPA---------WVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEG-WSMVDGLGT-DSCNAT--VVDGHRGS-----LPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPP--GYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGEVSGGSRR---FTDLS 1699
            GIA GI S P    DIH+VFSTDCS YQN+QS+L F SA   GQ+GP+TR+ASGC+  +   L+++    P+R RVHFTPDFSLD  TG ++ +YNKP  + H+L +A PP++EAV+AL+DPDM  + PL P VDD  +       ++ GP          W+ EG P GQ Y LGG W  W DL  I       SPAL V L  A  +Y VGPPYL H RD A + D WV    + Y+GH GIL+EMYAFCIAAAHL L H V    MVSD      +  W++V+ L   D C A    +D    S     LP + HYC ++R G +M+GKR +  H  F+CD+  L  PPP  G L+     ++VH         PP  +E V+  T VR  + +CA+ R +NEAL  ++   C   E + G  R    TDLS
Sbjct:    2 GIAPGIPSVPRHYDDIHIVFSTDCSDYQNWQSLLFFYSAARAGQKGPVTRLASGCSEAQMAELRDVHALMPQRHRVHFTPDFSLDARTGLRYPYYNKPRALRHWLAHAAPPVAEAVVALLDPDMAMLRPLRPYVDDDPETF---PRRRGGPGQPPVRGVEPWITEGHPAGQLYALGGAWAKWPDLATIVG--STTSPALSVPLDQAAKHYPVGPPYLAHVRDMAALADKWVEFVARTYEGHPGILSEMYAFCIAAAHLRLPHHVIRSYMVSDPNNRDEDAPWALVEALSDEDVCRALGPPLDALPASAPIPTLPVVAHYCHVFRAGLYMFGKRRRGLHGVFACDAQYLAEPPPHAGALR-----VKVH---------PPDRVEQVTRRTAVRNAFMVCALTRLLNEALLDFRQARCGAEEFAAGLSRVRPLTDLS 417
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A835ZI64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI64_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.760e-87
Identity = 167/424 (39.39%), Postives = 240/424 (56.60%), Query Frame = 2 
Query:  461 RGI-ASGIASRPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQ----TGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDS-CNATVVDGHRGSLPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGEVSGGSRRFTDLSKKQVE 1714
            RG+  +GI + P   HD+HVVFST+CS YQ++QS+LLF SA   G +GPITR+A GC+ E++T + +L    P   RVHFTPD+S+   TG ++ +YNKP G+ HFL  A+PP++  ++A++DPD +FM PLTP +D    +L            G   + EG P  Q YGLG  W  W  L  I +     SPAL V    A D+Y +GPPY+ H RDW ++ D WV   P+    +  +L+EM+A CIA+AHL L H V    MVS+     +EGW ++D L  D  CNA        +LP ++HYCQ +RVG + WGK        F CDS  L L PP +L S    +R+   P  + G P S +         R  + +CA+ + +NEAL  ++   C P +    + + TD+ ++Q++
Sbjct:   27 RGVDLTGITAVPRDEHDVHVVFSTECSSYQDWQSLLLFFSATRAGHKGPITRLAGGCSPEKQTEILKLHQHMPPHHRVHFTPDYSVISSTGHRYPYYNKPFGMQHFLATANPPITNTIVAVLDPDQVFMKPLTPFLDPDTTILADRNTMPPLRFNGMPVITEGYPASQRYGLGSEWRRWDGLGRIVQD--EKSPALTVDPQLADDHYPIGPPYVAHVRDWLKMADKWVEFMPRSLIEYPHLLSEMFALCIASAHLRLPHTVVRTFMVSNADD-GNEGWPLIDKLSEDEVCNAHNAPD-TSALPVVIHYCQHFRVGIYSWGKWEPKLQELFKCDSPYL-LEPPDHLAS----LRIKIEPDHLDGAPLSPL------LAKRHAFVICALTKILNEALRDFRKAMC-PSDQQNPTWQLTDVPEEQLK 434
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7S3HPB4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPB4_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.340e-71
Identity = 166/429 (38.69%), Postives = 232/429 (54.08%), Query Frame = 2 
Query:  401 PGRAVPADL--RAGAVPPQVVWRGIASGIASRPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLS-EAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPAWVVE-GTPVGQFYGLGGTWTTWKDLPEITRP--LGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDGH-RGSLP--PIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGV---RQTYALCAVLRAMNEALAAYKGRYC 1651
            P  AVPAD       +PPQVV+          PE    +HVVFSTDCS YQN+Q++LLF SA++VGQ+G ITR+ASGC   ++  L  L  K   ++  HFTPDF  D  T +++ FYNKP G+ H+L+NA P +    ++AL+DPDMIF+ PL P++     +L     +      V+  G PV Q YGLG  WT   +  +  R    G  SP L+V +     +Y+VGPPY+ H  D+ R+++ W    P+VY+ +  +LAEMYA+ +AAAH  L H      MVS+T+    E W  VD L    C     DGH    LP   ++HYCQ YRVG   + KR +  HN FSC+S  +  PP     +   T +V             + + V ++  +   R+ +ALC +  A+N AL  YK R C
Sbjct:   57 PDPAVPADSTREVEKLPPQVVFEA--------PEEDGQMHVVFSTDCSGYQNWQTLLLFHSAQVVGQKGRITRIASGCDATQQAELTALYKKLYPKYGAHFTPDFKNDAKTNKKYDFYNKPWGMKHWLENAVPAIPPNTIIALLDPDMIFVRPLGPQIRGDISLLTDRGIKDEEIVDVIGLGHPVSQTYGLGAPWTN-DNHKKFNRGKICGEGSPCLQVNMRYGELHYSVGPPYIAHRSDFIRIVESWTTFVPRVYEDYPYLLAEMYAYSMAAAHEKLPHVQVDNYMVSNTQ-AGGESWPHVDSL-PQVCVPPDEDGHFYAGLPMTTVIHYCQNYRVGELGFQKR-RVPHNIFSCESPMMVEPPTDLAAA---TYKV------------KSGQKVEMKNALQTKREAFALCVIHSALNAALLDYKKRMC 458
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7S2SD89_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD89_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.180e-68
Identity = 149/392 (38.01%), Postives = 212/392 (54.08%), Query Frame = 2 
Query:  494 ESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDD-PNKMLWHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDGHRGS----LPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCR 1654
            E   +IHV FSTDC  +Q++QS +++ SA + G  GPITR+ASGC ++ +        K     RVHFTP FS D  TG ++ FYNKP GI H+L +  P     ++AL+DPD  F+ PLTP +   PN ++    +++T P  + +G P  QFYGLG  W  +          G  SP L+ T  DA  ++TVGPPY++H  DW R+   WV   PKVY+ +  +LAEMYA+ +AAAH  L H     LMVS+      EGW +VD L +   +A     +  S    LP  +H CQ Y VG F + KR      F SCD++ L  PP   L + +  I V  + +  P    +N E  ++E   R  + +C + + +NEA+  Y+   CR
Sbjct:  107 EPAAEIHVAFSTDCKAFQDWQSAMVWSSAALAGHIGPITRIASGCASKSQEAELLHASKPWPNARVHFTPKFSTDTKTGREYHFYNKPRGILHWLTHGRPEAD--IIALIDPDQFFLRPLTPDLAGVPNLVVTDPVKKETLPTRIGKGAPAAQFYGLGDRWLRFNR----EYICGAGSPCLEATSRDAWRSFTVGPPYILHVDDWKRLARSWVDFVPKVYEEYPHLLAEMYAYSLAAAHEELPHFRVNHLMVSNVGSYG-EGWPLVDSLPSVCADALRPSSNTSSAASMLPTFIHACQSYHVGRFRFSKRALPTDKFSSCDAEFLHEPPETVLSTELQEI-VTQIAQG-PRRKKTNEEKKAVEEK-RNGFMVCMITKLINEAMRVYRKGACR 488
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7S3ZM89_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM89_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.040e-67
Identity = 149/396 (37.63%), Postives = 216/396 (54.55%), Query Frame = 2 
Query:  509 IHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQE---LMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEA-VLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGT-DSCNA------TVVD-GHRGSLPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVP---RAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYC 1651
            + VVFSTDC+PYQ++QS ++F SA++VG RGP+TR+ASGC+ E+E  L++    +     RF +H TP+F  D  TG+ + FYNKP G+ HFL +       A ++AL+DPD  F+ P + RV  P+ ++         PA+V EGTP GQ YGLG  W T+    +  +  G  SP L+ +  DA  +Y +GPPY++H  D+ ++  +W   +P+VY  +  +LAEMYA+C+AAAHL + H      M+S+   V  EGW  +D L   D+C A       VVD   R  LP  +HYCQ YRVG F++ KR      F  C    L  P  G +++ +    +HP     R  P   P     V+     R   A+C     +N A    + R+C
Sbjct:  106 VRVVFSTDCTPYQDWQSEVVFNSADVVGHRGPVTRIASGCSPEKEAALRQRYAALYGARARFSLHVTPEFDKDSATGKSYHFYNKPRGMEHFLNDRSIDFERAPIIALIDPDFAFLRPFSDRVAGPDALVIAPWRADELPAFVTEGTPAGQQYGLGTHWLTF----DRRKICGAGSPCLETSRRDAERHYPIGPPYVLHHNDFRKLAPVWREFAPRVYAQYPDLLAEMYAYCMAAAHLRMPHARVNHWMLSNVH-VGDEGWRHLDALALRDACPARGGKTPNVVDHATRFVLPAFLHYCQNYRVGDFIFAKRRVPPALFTDCAHPPLLAP--GLIETQVD-YELHPPGNPCREAPQRKPLGRSIVN-----RTAAAVCLATWHVNAAATRARKRFC 488
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7S3Q7Y1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7Y1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.470e-65
Identity = 147/413 (35.59%), Postives = 219/413 (53.03%), Query Frame = 2 
Query:  488 RPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQ----ELMDKQPERFRVHFTPDFSL-----DPVTGEQFLFYNKPNGIAHFLKNADPPLSEA-VLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDGHRGSLPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGEVSGGSRRFTDL 1696
            +P S  + H VFSTDCS YQ++QS LLF SA  V Q G +TR+ASGCT EE+   +    ++ D+    F+VHFTP FS      +   GE + F+NKP G+ H++++A+  + +  ++ L+DPD +   P+T    + ++     Q  +T    V  G+P  Q +G G +W    D+  +T    NDSPA  VT  DA D+Y  GPPYL   +D   +   W    P+ YK    ++AEMYAFCIA AHL + H++   LMVSD  +   EGW+ V+ +  +   +    G+  +LP ++HYCQ Y +G  ++GK HK   + FSCD+  L +PP    +     I     P  V G+     E ++     +  + +C +    NEA   YK R C+  EVS    +  DL
Sbjct:   79 KPTSTPNYHTVFSTDCSGYQHWQSYLLFYSAYKVKQPGTVTRIASGCTKEEQEAERAFQSQISDQMSSNFKVHFTPQFSKVKGEGEEGDGETYKFFNKPFGLLHWIEHAEVKIKDDDIVILLDPDQVLTRPITNDFSNQSENTLVGQNPKTI---VTHGSPFAQEFGFGASWRNL-DIDAVTGT--NDSPAKSVTEQDAIDHYPAGPPYLATTKDMHAIARTWSDFVPRSYKIFPELMAEMYAFCIAVAHLKMPHQIVKSLMVSDVDVEDGEGWNFVEAIEDEKICSPAAMGYS-TLPSVLHYCQRYVLGKHIFGK-HKMPLDTFSCDAPLLAIPPEDIAERYDYWID----PNLVDGK----REYLTKIEVKKTAFMICFLTHHANEASKFYKSRNCKSSEVSAAPLKIIDL 475
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: W7T637_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T637_9STRA)

HSP 1 Score: 239 bits (609), Expect = 4.730e-65
Identity = 148/391 (37.85%), Postives = 211/391 (53.96%), Query Frame = 2 
Query:  509 IHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKN-ADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDS--CNATVVDGHRGSLPPI-VHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGEVS 1669
            +++VFSTDCS YQN+QS+ +F +A+ V Q G I R+ASGC+  E+  +Q+L D  P RF+VHFTP+F  D  +G+ + FYNKP G+ H+L + A P   +A++AL+DPD +FM PLT +V     +             V EG PV Q+YG+G  WT +K    +    G DSPA KV++ DA   Y+VG PY+ H +D  ++ + W    P+VY+ +  +LAEMYA+ IAAAHL          MVS+T+    EGW  VD L TD   C+A   D  +G   P+ +HYCQ YRV  + + KR  +  N F+C S    +PP     +                +        S +   R  Y LC V+R +N A   +K   C  G  +
Sbjct:   90 LYLVFSTDCSGYQNWQSLAVFFTADAVRQPGTIVRIASGCSEAEKKEVQKLYDTFPVRFQVHFTPNFKKDAKSGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFLFMRPLTYKVKQDRVLYSPPVTDGDLIDEVREGHPVAQYYGIGSQWTKFK----VEYIAGKDSPASKVSISDASRYYSVGAPYIAHVKDMRKIAESWANFVPRVYEEYPHLLAEMYAYSIAAAHLXXXXXRLDHYMVSNTQ-AAGEGWPFVDRL-TDKYVCSAEAPD--QGQEQPVFLHYCQFYRVEHWGFHKRRVAT-NLFTCKSPLFIMPPEDLEDTHWK-------------DNGDKKTMYSKQEAQRAAYMLCNVIRKLNGAAVKFKNLNCLAGSAN 458
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7R9U6U9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6U9_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.200e-63
Identity = 144/401 (35.91%), Postives = 205/401 (51.12%), Query Frame = 2 
Query:  512 HVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDK-QPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKML------WHEQEQQTGPAWVVEGTPVGQFYGLGGTWTTWKDLPEITRP-LGNDSPALKVTLVDARD---------NYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTD---SCNATVVDGHRGS-LPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYC 1651
            H++FSTDC  YQN+QS LL  SA+ VG +GP+TR+ASGCT EE+  L+   D       RVHF  D S     G  + ++NKP+G+ H+L+  +      V+AL+DPDMI M P    +D     +      W   +    P  +V+GTP  Q YGLG  W       E  RP +  D  +  VT  D  +         +Y VGPPY+    D+ ++ D WV   PK+Y+  A +L EMYA+C+AAAHL + H + +  MVS+  M   EGW  +D    D    C+A++++ H  S +P I+HYCQ Y  G      +H+   + FSCD + L+ PP   ++ P GT         V G P       + +   R T+  C    AMN+AL  +K   C
Sbjct:  105 HIIFSTDCGAYQNWQSELLAFSAQRVGHKGPVTRIASGCTPEEQEALRTRYDTFDLAGLRVHFA-DASKKMADGRVYKYFNKPSGLKHWLEYDERLEGNEVIALLDPDMILMKPFPAHMDPEKDFIRTHVPYW---DASKAPKRIVDGTPAAQNYGLGSKWV------EFNRPYVCGDETSPCVTDFDETNKEDRKRAVAHYAVGPPYVATRNDFIKIADKWVEFCPKLYEEFAELLTEMYAYCLAAAHLQMPHFMVFNWMVSEPGMENREGWPEIDSAAADPNFQCDASILNTHETSNIPNILHYCQKYIAGENQIWSKHRIPKDIFSCDRELLQPPPVNAMEYPPGTD--------VRGRP------FNEKFWRRNTWMACYAYHAMNDALIRFKRANC 481
[Close]
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Match: A0A7S3MDZ4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDZ4_9STRA)

HSP 1 Score: 230 bits (586), Expect = 7.430e-63
Identity = 145/416 (34.86%), Postives = 216/416 (51.92%), Query Frame = 2 
Query:  521 FSTDCSPYQNYQSILLFQSAEMVGQRGPITRVASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNGIAHFLKNADPPL-SEAVLALVDPDMIFMSPLTPRVD-DPNKMLWHEQEQQTG--PAWVVEGTPVGQFYGLGGTWTTWKDLPEITRP--LGNDSPALKVTLVDARDNYTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLGLRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDG---HRGSLPPIVHYCQMYRVGTFMWGKRHKSHHNFFSCDSDS-LELPPPGYLKSPMGTIRVHPVPRAVPGEPPSNMESVSLETGVRQT----YALCAVLRAMNEALAAYKGRYCRPGEVSGGSRRFTDLSKKQVEADPY 1726
            FSTDCS +Q++Q++L+F SA  V Q+G ITR+ASGC   ++  L  L  K   ++ VHFTPDF  D  + +++ FYNKP G+ H+L NA+PP+ S  ++ ++DPDMI + P+ P++  +P  +  +  + +T   P  V  G PV Q YGLG  W          R    G  SP L  T      +++VGPPY++   D  ++++ W A+ P+VY+ +  +LAEMYA+ +AAAH  L H   + LMVS+      EGW  +D L  + C A  VDG       +P ++HYCQ YR G   + KR +     FSCD    LELP      + +G +               N +   +  G R+     + LCA+  ++N  +  YK   C  GE     +    +SK   E  PY
Sbjct:    1 FSTDCSFFQDWQTLLIFHSAVSVKQKGLITRIASGCDDAKKVELTTLYKKLYPQYGVHFTPDFKTDGKSKKKYDFYNKPYGVQHWLVNAEPPVPSGTIVNIIDPDMIILRPMVPQIKGNPANIFMNRFKPETDFIPEKVAHGMPVAQLYGLGAPWAQKAPHKHFNRTHVCGAGSPCLDTTTSFGEQHFSVGPPYMVEKDDLLKLVNSWTAMVPRVYEKYPSLLAEMYAYSMAAAHTDLPHFTLHNLMVSNVH-AEDEGWPWIDQLEDNVC-AKPVDGVLYPTKVMPSVLHYCQFYRAGEMGFQKR-RIKKELFSCDQPMMLELP------ADLGKVNY------------KNRDGEHMPLGKREARRNAFMLCALHNSINAMVTHYKSVMCTNGEKVNLDKTINVVSK---EFFPY 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.56.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU90_ECTSI2.140e-20761.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDP3_9STRA2.990e-10244.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZI64_9STRA1.760e-8739.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HPB4_9STRA2.340e-7138.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SD89_9STRA1.180e-6838.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZM89_9STRA1.040e-6737.63Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S3Q7Y1_9STRA1.470e-6535.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7T637_9STRA4.730e-6537.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9U6U9_9STRA2.200e-6335.91Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3MDZ4_9STRA7.430e-6334.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:227600..238274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU90
PFAMsShK
Model size4119
Max annot lvl2759|Eukaryota
KEGG koko:K20781
KEGG Pathwayko00514,map00514
Hectar predicted targeting categorysignal anchor
Exons8
Evalue7.5e-220
EggNOG OGs2CMIY@1|root,2QQG8@2759|Eukaryota
Cds size1569
CAZyGT96
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.56.4prot_P-littoralis_Contig62.56.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 230020..238111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791290.8705409-UTR-P-littoralis_Contig62:227599..2282091680791290.8705409-UTR-P-littoralis_Contig62:227599..228209Pylaiella littoralis U1_48UTRP-littoralis_Contig62 227600..228209 -
1680791290.8817725-UTR-P-littoralis_Contig62:228242..2300191680791290.8817725-UTR-P-littoralis_Contig62:228242..230019Pylaiella littoralis U1_48UTRP-littoralis_Contig62 228243..230019 -
1680791290.9848988-UTR-P-littoralis_Contig62:238111..2382741680791290.9848988-UTR-P-littoralis_Contig62:238111..238274Pylaiella littoralis U1_48UTRP-littoralis_Contig62 238112..238274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791290.8961136-CDS-P-littoralis_Contig62:230019..2303791680791290.8961136-CDS-P-littoralis_Contig62:230019..230379Pylaiella littoralis U1_48CDSP-littoralis_Contig62 230020..230379 -
1680791290.9092748-CDS-P-littoralis_Contig62:231218..2313781680791290.9092748-CDS-P-littoralis_Contig62:231218..231378Pylaiella littoralis U1_48CDSP-littoralis_Contig62 231219..231378 -
1680791290.923109-CDS-P-littoralis_Contig62:232116..2322921680791290.923109-CDS-P-littoralis_Contig62:232116..232292Pylaiella littoralis U1_48CDSP-littoralis_Contig62 232117..232292 -
1680791290.9350734-CDS-P-littoralis_Contig62:232854..2330241680791290.9350734-CDS-P-littoralis_Contig62:232854..233024Pylaiella littoralis U1_48CDSP-littoralis_Contig62 232855..233024 -
1680791290.9535935-CDS-P-littoralis_Contig62:233642..2337731680791290.9535935-CDS-P-littoralis_Contig62:233642..233773Pylaiella littoralis U1_48CDSP-littoralis_Contig62 233643..233773 -
1680791290.9636288-CDS-P-littoralis_Contig62:234301..2344531680791290.9636288-CDS-P-littoralis_Contig62:234301..234453Pylaiella littoralis U1_48CDSP-littoralis_Contig62 234302..234453 -
1680791290.9746757-CDS-P-littoralis_Contig62:237691..2381111680791290.9746757-CDS-P-littoralis_Contig62:237691..238111Pylaiella littoralis U1_48CDSP-littoralis_Contig62 237692..238111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.56.4

>prot_P-littoralis_Contig62.56.4 ID=prot_P-littoralis_Contig62.56.4|Name=mRNA_P-littoralis_Contig62.56.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=523bp
MRRRSRLEENLANSGRSSTRQYLFYGTIGLLSLALPAALALFGHRFLPSN
APADSGATPYSVIDPTRSQDDTQRQPHPGPGRAVPADLRAGAVPPQVVWR
GIASGIASRPESVHDIHVVFSTDCSPYQNYQSILLFQSAEMVGQRGPITR
VASGCTTEEETVLQELMDKQPERFRVHFTPDFSLDPVTGEQFLFYNKPNG
IAHFLKNADPPLSEAVLALVDPDMIFMSPLTPRVDDPNKMLWHEQEQQTG
PAWVVEGTPVGQFYGLGGTWTTWKDLPEITRPLGNDSPALKVTLVDARDN
YTVGPPYLMHPRDWARVLDLWVALSPKVYKGHAGILAEMYAFCIAAAHLG
LRHRVAYGLMVSDTKMVTHEGWSMVDGLGTDSCNATVVDGHRGSLPPIVH
YCQMYRVGTFMWGKRHKSHHNFFSCDSDSLELPPPGYLKSPMGTIRVHPV
PRAVPGEPPSNMESVSLETGVRQTYALCAVLRAMNEALAAYKGRYCRPGE
VSGGSRRFTDLSKKQVEADPYS*
back to top

mRNA from alignment at P-littoralis_Contig62:227600..238274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.56.4 ID=mRNA_P-littoralis_Contig62.56.4|Name=mRNA_P-littoralis_Contig62.56.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=10675bp|location=Sequence derived from alignment at P-littoralis_Contig62:227600..238274- (Pylaiella littoralis U1_48)
ACCAGCTCCCTGTGGCAATCAGTTGCAGTCGGTGGCCGTGTACAAAACAC
GACCTCGCTTGTCTGCTCCGTGGGGAGCGAAGAGAGATATTGGGCCCAGT
TCGGTGCACAATCCCACATCCCCGAGCCTGCTCATCCAGGTTGTAAAAGC
ACGACCAAAGACCATGCGTCGGCGGTCGAGGCTTGAGGAGAACCTCGCAA
ATAGTGGACGATCATCCACTCGCCAGTACCTGTTCTATGGGACGATTGGT
CTGCTTTCCCTCGCACTTCCCGCGGCACTGGCCCTCTTCGGACACCGGTT
TTTACCCTCCAATGCCCCGGCGGATAGCGGTGCAACGCCATACAGCGTCA
TTGATCCAACACGCAGCCAAGATGATACTCAGAGGCAACCCCACCCAGGA
CCAGGGCGAGCTGTTCCTGCAGATTTGAGGGCTGGTGCAGTGCCTCCGCA
GGTGGTGTGGAGAGGGATAGCCAGCGGGATTGCTTCGCGGCCCGAATCGG
TGCACGACATACACGTGGTGTTCTCGACGGACTGTTCGCCGTACCAGAAC
TACCAGTCCATCTTACTGTTTCAGTCAGCAGAGGTAAGAATGTACTGGAT
GTGTTCCCACTGCTTTTGTTATTTATCTTGTTCTATCCTGTTCCATAGTA
TCGCGCAACCTGTCCCAGGCGGGACTGTGAGCTTCCTTATCTTTATCCAA
GATGAATTGCAGGAAGCGTGTTCCACTGCTGTTTGGGAAGATAAAGTTGC
GGGTCGTTTATGTCGGTTCGAGAAACTAAAAAGGTTGGAGGCTAGGTGCC
GTGTTACGCAAGTTGCAAACACAGGTGTTGCAGCCTATTGTAAATGAAAG
TACTTTGGCTCGTAAACTGCTGTTTGACCCTTCTGGAACCACAGGCCTTT
TTTGTTCCTTTTCACGCGAATAGCCCAGGTTCCAAAATAGAACCAGCATA
CAAGTAGATCTCCCCGCCTGGTGAACAAGCAATGTATGATGCACAGCAAA
CAGCAGAGAGACAGAAAAAAAATAGGAAAAAACATACTTCGAAGTACAAC
CCACCACTCATATATCTATAACCAGGGTACCTGGAAAGGGCTCAAAGCAG
GCTGGTTACGTCCCTGGAGAGAACTGAAGGGATACCCAGTGGTCGAAATG
CCGCGGCCAGCTTTCAGGCGTCGCGGGTGGACGGTTTTCCAGCAGTGGTG
TTTCAGTATTCATCACACTCTAACCAAGATAAAAAGGTGAACGTGATAAG
TAGATCGTGACAACGAAATCCTTATTGTAGCTCCTGCCCTGGGTAAATGC
ACATTTGGGATGGGGGCCCCGTGGCCTGGTCGTTCCTGCTTCAAGGATGA
CACACAGAGTACTTCGATACAACAAACCAACACAACACACCAACCACCAG
CGAAACAGAGCGGTAAGCGATAGGTACAGCAGCAGCAGCAGCGCAGCAGT
AGTACTCTATCTAGCAACCGCACGTCTTCCGACACGACGATCAATCGCGC
AGCGTACACATCTTTGCTCCTCTTTCCTTGTGTCGTATGAGAGGATGTAC
TTGAATGCAGAGTCTGCTGTTGTTGTCGCTGTGTTGACCAGACAATGCTA
CACCACATCATTTCTCTGTATGAATGAAATTCTTCTATAGCAACTGCTGT
TTGTCGTTGTAATCGCCGACACGGAGGAGGTACTGCTGTAGCTCTCACCC
TTGACGTGTCAATCTCGGAAGGGGCACTGTTGTAGCAGCAGTAGCGGGCC
TACACCTCTTTGTGTCATCATAACGATAGGGCCGATTGCTGCTGCTTGGT
GCTTGGTGTGAATCATTGCTGCTGTGGTCATGGTAGATGGCATTTTTGCT
AATAGATGGACTGCGCTGGTGTCTGGTTACTGCGCGTTGTGTGGTGTGTG
CCAAGCGAAAGAAATGATACGAAGTATACTTCGGCGTATCATACGTGCTG
CTGTTCACAGCTCAGTGAGTAGTATCGGTACGATATGCTTTTGTGAAGCA
TTGCTACTGCTGCTCCTGCTGTGGGCGAGCCTGCCCACCACGTGCATACA
CATAGAATAATACGACCAAACGACGTTAGTACAGCAGCAGTAGTAGCAAT
GTAGGTGAACAAGCTTACCTACACGGAGTCCCTGGCGTGTTCGGGCAAAG
CCCGAATGGACCAGGCTTGAAAAAAAAAAATACTGAAAAATGAACACCTT
CAGTGAACAAAAAATCCCACCCCAAGTTACAGAACGTATCATACAAAATA
TGTGGAAAATTTTTTGCCAGTCCCCAATCTTGACACACTGCTGAACCGGC
TTGGTCATCACCTTCTTCTGCTCTTCGCACAGCAGACCGAGGGTCGCCAC
GAAAGTAGAGAGACATCTCAAACAAGTCAAACCCTCCATTCCACAACCCA
CAGCTGTTGATACGCTTCGATTTTCCTTTGTGAAAGTACGCGGAAGAAAT
CTTGCGTCACCACATGTGAAGACAAACCGTTTGCTGCTGTTTTATGCGAC
CCCATCTAGCTCTCGGGAGGCAACTTTCACGCCAGTGTTACCCTTCGCAG
AGTAAGAAATCGGCCGATACTCCACCCCAACAGAGTTAATACTGTACATG
TAACCGAAGTACGCAACCCGCCATTGCATAATTTGATGGTTTGGGATCGG
CACTGCGGCGATCGATACAGGCCTCTGCAACAGTCGCCCGACACTATCCA
AATCGAGTGAAAACGTCAGCAGTCAGCAGTGGCGCAATTGGGTAGAGTCC
TGGACATGGATGATGACCGCACCTCCTCACGTGTTGTACAAATTATAAAA
AAATGACCCATAAATTATACTCCGAAGTACACAAAATTACCAAAGAATAT
CCTTAATATTCTCAACGGCAAAGACGGGACTTGAACCCGCGGCCATCGGC
ATGACAAGCCGACACTCTACCAGCGCGAACAAAAGTAAAAATGGACTTCA
CGCCGATGTTACGCCTTCGCGGAGAGACCAAATGGCCCAGAAATTTCCAG
AGATGGAGGGGGGTTGGTGCAGTACGCATCGAGCTCTTGCATGATTTGGG
ATCGTGTATGATAGCAAGATATCCGGACTTTTGACGCGGAACAGCCCCGA
GGGTTGTAGTCCCAGCATTTGTTTTTCTTAATTGCCTGCACATCGCCTGC
ACCAAAAGAGAACCCGGGATGTTTCCTCAATATACATGGAGGCTGCAACG
CCTTTGCAAATCGATAAGTTGAAAAGGTATCCTGTTGTTTGGATGTATCA
ATGAAAACTAGAGTGAGTACGATGCAGAATGAGCCTCGTGACTTTGAACA
CCCAAAAGAGGTGCAGAAGCTCCCCTCTCCCGCCGTGCGTCGAAAACGCA
TCGAATGGCAGCCTCGTTCGTGCCGTCTTTCAGCACCGGCCTCTTCACTA
ACCCCTTTGCATTCAATCCCTATTATACTTGCTTGCGAGCCTCATCGTTG
CCTAGTTTGATGGGGCGTGGGTGGAGTTTGCGTCCGATATGGGTGGTTGC
TCGCCGTGCCAACCCAGTTTTGTTCAACTCGGCGCAGCTGCGCTGTTTAA
TACGGGTGCAGCGCTGTCCTGCCCGGCTAAAGCTTGAACCAGTATGGTTT
ATCCCCGCTACATACTCGGACAAAAATCGCCTTTCTTTCCTTGTATCAAC
GCAGTTCAATTTCCTCACCGCTCTCTCTGAAACTGCTGTACCCCCCCAAT
CGTACCCTTCCCTTCTTAAGATGACTTTTTCCGTCCTTCGTCCGGCGTTT
CGACTAAAATAATGGTCGTGGCGCGCGCGCTTTGTTCGTGTGTGTGACAA
TATACACTCGTGTTTGCGTAGATGGTGGGGCAGAGGGGCCCCATAACTCG
CGTGGCCAGCGGTTGTACGACAGAGGAAGAGACGGTGCTGCAAGAGCTCA
TGGACAAGCAGCCGGAGAGGTTTCGGGTCCACTTCACCCCCGACTTCAGT
CTGGACCCGGTAACAGGAGAACAGTGAGTTACTCACAGTCGTTGAACACT
TTCTCTTTCTTTTTCTTTTTCTTTTTTGCACCCCACCTCGACTGGACCCC
ACCCAGTCCACACCTTTCGGTAGACATTTTGGGCGCGCAGCGCACCAGCT
GGGGTTCACACAGAAGGAGGCCCACACACCTATCCCTGAGCACCCTCTCC
GCCTTTTGACTCCTGCGGTTCTTGCCTCTATCATATCATACCATGCCATG
TTTTTTTGCGAGAAGGGTAAAGGGAGGAAAAAACATCAACCCCACCCCAC
AACCTGCGCACCCCTCCACACCGTCATGCGCTTTGCATGCCCGTTTTGGT
ACTGATTACGCTCCAGCTCCCGTTGTTGTGTTCACTCTCACGGGACTTTG
TCGACCCCAACCCCTAGTGGTAAAATATGACCCATCCCCCCCCCCCCCTC
CCATTCCCCCCCATCCGCCCTTCCATCGTATTTTTCCCGCCATACTGCTG
TATGATACCCCCTGTTTACGCGTGGTGCTCACTCAACTCACAACCAACAA
GGTTCTTGTTCTACAACAAGCCTAACGGCATCGCTCACTTTTTGAAGAAC
GCCGATCCCCCGTTGTCCGAGGCGGTTCTTGCTCTCGTCGACCCGGACAT
GATCTTCATGTCGCCGCTCACACCGCGCGTCGGTGAGGAAGTAGGAGATG
GGGGTAGAGAGCATTGGTGTCGCTTTTCAGCGAGAGGGGGGACGAGATTG
AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGATCTTGGTGTTGCGCGTT
GCGCGTTGCCGTTGTTGTTATTGGTGTTGGTTGTTTTTGTTGCTGCTGTT
GTTGGTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGCTGC
TGTTGCAGGAGGTGCGTGCTGCTTGTCGTTGGTATTGGTGTCGTTGGTGG
GTAGGCGATCGGCTAATCGTGCCCGGCAAACATGTATACTTCGTATCTTT
TTTTCGTACCACGTGTTTTCATGGATATTTTGTAGTCACGAGACGGCTGT
GTATGACGGCTCGATAAAGTATCTTCACTGCAACTTTCCTTTTCGGACAT
ACACGACGGAGTGCGGCGTGCATCGCGCGTCGCTCGTGATATGCGGTGGT
TTGGCGTGAGAGCCGTCTGATGAATATCATACATCTATTTCCCATTATTT
GCAACGACACACATACACATCGCCACTTTTCCTCTTATCCTCCCTGAAAT
CAAACCAAATCAAAAACACGAACTCACCCACTCACCCATCCTACGCACAG
ACGACCCCAACAAGATGTTGTGGCACGAGCAGGAACAGCAGACGGGGCCG
GCGTGGGTCGTGGAAGGGACGCCGGTGGGGCAGTTCTACGGGCTGGGTGG
CACGTGGACAACGTGGAAGGATTTACCGGAGATCACGCGGCCGTTGGGGA
ATGACTCTCCCGCTTTGAAGGTGGGTTGGTTGATGCGCGGTGTAGCTAAA
TTTCGAAGTAGATCGTGCAGGTCGGCGTGTCCCTGCTGTGTACTTGTATC
ATGCAAAGTTTTTGTCAGGATCTGATACTGCCGTAGCGCTCCCCCACTTG
ATCGAAAGAGGCGTGCTGTCCACCCCGCGCTCCACACTCCCGTATAAACT
ACGAGAGAACGCGAGGAAACGTGTTGTACCCGGGAGAACCATAAACAGCA
GTGTTCGTCGCGTCCGTCTGTCTACTCTGCATGTGGCCCCACGTGGGGAA
ACATACAGGACTTCAGTTTTTTTTGCTCTTTTTGTTTCCCGTTGACCCAA
AAACTTGTAGGCAATCATCACTCCAGGGCAGTTTCCGTGCTGACTGCCTT
CTCTCTGTCCTGCCCCCCAGACGAGGAGTAATGAAAACGTCCGTGTGTGT
TTTTCCAACTGGAGCTTTACTTTACCTCATTGTTTTTTATTTTGAGCAAC
GTCGGGATGATTTTGTCGCCCCCCCCCCCCAGCCCCCTCCTCCCCCCCCC
CCCCCTCACCCGCCCGGCCATTGTCACATAAGGTCACATTGGTAGATGCC
CGAGATAATTATACCGTGGGACCGCCGTACCTCATGCATCCCCGAGACTG
GGCGAGGGTTCTCGATTTGTGGGTGGCGTTATCGCCGAAGGTGTACAAGG
GGCACGCGGGAATCCTCGCAGAAATGTACGCGTTCTGCATCGCTGCGGCG
CATTTGGGGTGAGTGCGTGCCTTTGTTGCGCCAGTATGACATGCAGTGTT
GTGATGTGTGCCCCCCGGGCCCGAGAACGACGAGAGCGGGTGCCTCTTGG
CCTGTGGCGTTCATGGTCGCGGTCGTGGTCGTGGTCGTGGTCGTGGCGGC
GTGTGTGTGATGAGATGGGTCTTTGGTTTTGCTTGTTCGGTAGTGTCGGC
GGTGTTGCATGGAAGTGCTGATGGTGTTTTTTTTTTCTCTACAGTAGGTC
AGTCAAGGGTGCTACTCTGTTTTTTTGGCTGCGCACCGGCGTGCGCGGGC
ATTATGGGGGAAGACCGGCGAATCTCCACACGGTAGCGTCTGTATGACAC
TCAGTCATCGTCACTCCCGAGACTGATGATGACGAAAGAGATGGAGAGAG
TAACGTTCGGAGGCGCCTATCGTACTCCCAGCCCCCAGATCCCTTTCCCA
ATGAACATTATGTTGCTTCTTTTTTTTACGACATCGATCGCCATACTGTG
CATCTTACACGCTCCGCGGAAAAAGGTGGCAAAGAAAAGACTGACGGGTC
CCGTCTACAGGAGTACGTACCTTCAATAGGTGTTTGGGGCTCTTGGATGA
AAACAATTTCCCACTGATGTACTTCGAAGTTTGTATCTGCAAACAGGTGC
CTTCCCTCCCCCCCTACATCTCTCGCTCGCATTCGGCACACGCAAAAAAA
GTCGATGATGATGACGATGCTGATGATGCGGACCGGACGAAAAAAGGTTG
CGACATCGCGTGGCGTACGGACTGATGGTTTCGGACACGAAGATGGTAAC
CCACGAGGGCTGGTCGATGGTCGACGGCCTGGGGACAGACTCTTGCAACG
CGACCGTCGTCGACGGGCATCGCGGCAGCCTCCCGCCGATAGTGCACTAC
TGCCAGGTGAGCGAAAAGTCGAGAACATCGCGGCGGGCGGCACCGGCGGC
ACCGGTGGGCGCGGTGGCTGCCGCCCAAGCGCGCACCCGCTCGGGGCGCT
TCGCGTCGAAGGCATAACGTCAATTTGCTGTTTGTCTCGGGCGCCACAGA
GGAATCATTATTTTCTTATATTTGTTTTCCATCGGAAGGTTGGGAGTTTT
TTTTTTTTCTGTGGGCCGAATGAAGCGGGGGCGATTTGCCGGCGAACGAG
CGAGTGGGCGGGGCGCTTTTTTTTCTCGCACCGTGCATCTCTATACGCGA
GCGCCCGCCGTGTGTGTGCGTGGAATTGTCATCTGAGGGACATGTGGCCT
CGGGGCCCGTGCGGCTGCGGCGGTTGAGTGGAAGAAGATACGATACGAGC
GCATGAATATTTTGGTTTTATATCACGAGCGGATGCCGCCAGAAAAAAAA
AATGGTTTGGGTTTGCTTGCTTTTTGCAAAACCATGTGGTGTGTGTTGTG
AGCAGATATTTTACGCGAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTGTGCATGGTGGGGGGGCGTCCGAGGGCTGC
GTCGTGATCACTGCGTGCATCGTGGCTCTAGCCTTAGAATAGGCTGTTGT
GGATACTCTCGCACTCGGGCACAAGTCCCGCTGTTTTAATATTTTACCTG
TACATACATAAGTACTGGCGTCGCGTTGAGTTTCGTATTCGTCAACATGA
GACACGAGCTAAAAAAACACGCTATTATAGCTGTCTCAGGAATTCATACA
CGTACCCCCCGCCCATCCTCCCCCGCCCGCCATTTTCCTCCGTAGATGTA
TCGGGTCGGCACGTTCATGTGGGGGAAGCGCCACAAGAGTCACCACAATT
TCTTCTCCTGCGACTCGGACTCGCTCGAGCTGCCCCCGCCGGGCTACCTG
AAGAGCCCCATGGGCACAATCCGCGTGCACCCGGTGCCCAGGGCCGTGCC
GGGCGAGCCGCCCTCGAACATGGAGAGCGTGAGCCTGGAGACCGGAGTGA
GGCAAACCTACGCGCTGTGCGCCGTCCTGCGGGCCATGAATGAGGCCCTC
GCGGCGTACAAGGGCCGCTACTGTCGACCCGGAGAGGTTTCCGGAGGCTC
CAGGAGGTTCACCGACCTCTCGAAGAAGCAGGTGGAGGCTGACCCGTACT
CGTAGGGGGGAAGGAGAAAAAAGAGAGCTGGGGGGAGCGGCAGCGGCAGC
GGCGGCGGCGTTAGGGGGCAGTGAGATACCATAGAGAGGTCTCTCTCTTT
TTTTCCTGGCGGAGATCATGACCACCGGTGTTAATATAGCTGCGCGTGTC
TGTGGTCAGAGCGCGCTCGCGTGTGTGTGTGTCGTACGTCGTGTGTTTTG
TGTGTGTGTCATGGGCGCCTTGTCTCTCTCCGTAGGGTGTGTACTGCTGC
GTGGTCGCCCCCGCTTCAACGACGAAAGCGTTGAGGAAGCTTCGTGGTTT
TAAGAAGACACGAACTCCAAATGCAGATCCACACTACAAGCGAAGTAAAA
TACGATATCGTTCGTTCGTGTCACATTTGAGAAAGCTGTGATGCCAGCCG
GCGGCATGGGCTTGTACCTACTGCTGTAGATCCTTTCTCGGGCATGTTGG
TTTACGGACGATGTGTTCGTCGTTGGAAAGGCACAAAGCCCCACACGAGG
CTGAAGTGTGTTGACGCGGTTATGGTCGCGACTCAAGTGCAGACGGCGGA
CGACCCAGACGTGGTCGGAAGAAGGAAGAGGTCGGCCTTGGAAGTGCAGG
CTGTACCTGGGGCATAGGATTCACCTCGCAGACACCAAAACGTCGAATTT
GGAGCATGAGGGGGGTATTGTACAGTAGTAGGCCAAGGGTCAGCTGCATG
AGCCGAGGCCCGCTCTCGTTGTTAGAGAGGAAGTTGACGCCTTTTTGTGC
GAGATGGAGGAAGGGATGACTGACGACGAGCGCCAATCAAAGCAGCGAAA
CGCAGTACACGGTATCCTTTTTTCGGGAACGTTTTTTTGCATTCGTACAC
GCATCGTAAGGCTCAAGTCAAGCGTGGAGAGGAGAGGAGGGGCTGGCGTC
TTCTTCGCGTGATGCGTGGCAAAAGGACTGTAGCGTATTGCTCCTATCAT
TGCTGCTGTTCCATACTTGAAGTGTGAGACATGCCGTAATTTTGGTGAAG
TCTTAGTCTGGACTTGGAAACCCTTGTAGAGCAAGCCAGCCGTGCGGGAG
TGCTTTGTTTATAGCGGATCGATAGCGCACCGGTAATCACCCGAGGATGA
AGTGCGCATAAACGCTCGGCACGGAATGTCATGGTTCTGGATTGTGCAGT
GTTCGTTCGACAACGCGCCACGGCTCTGCCCGTGAGGGTTACGGTAGTGC
CTGCGTTTGCTTCACCTGCGTTTTCTTTCGTGCTGCTTTCCCTCCACGCC
ACAGGCATATTTTTCGAGGTATTGAACGCCTCGGGGACGGTATTCTATCG
TCCCCTGAGCATTGACAGACGCCTTGCTCCGTGTGCGCCAGCTTGTATGT
TCGTCTATTAAGCGGGGAAGACTGCTGTGTTAGATCCCCCCACAACCGAC
CTATCAATAGCTGTCGGCAAGTGTTTTTGTTTTTTTTTGCGGCCAGACAC
CCCACTCGACTCTGTACATAAAAGGCAGAGGGAAAGGAAAGAGTTTGGGA
ATCGCTCCAGGATTGGCGCATCGGTATAAACTTGCTGTGTCTCGCTCGTG
CTGTTCTGTGCCGTGTCGCGTCCGTGAGCCGTTCTGCGCTCTGTGCCGTG
TTCTCTGTGCGGTGTGCTCTGTGCAGTGTTCCGTGGCTGGGATTGGGTCG
ATTTTCGCTCAATGTACGAGTGTAGAGAGTTAAAAACCAGGTTACATTTA
TTTATTCCCTGGTTTTGAACGGGGGGAGGGGGAGGGGGACGGGGTCAAAA
TCGTGTCAATCCCCCCCCCCCCTCTCCTCAAAGTGTATCTTGCCCATTTA
TATCATACGCCGAAGCGGACCGATCGCGTGCAGACGGGCGGGTGAGAAGT
GTTTGGTTCGCCGTGCAGGTATTGGCGTGGGCGTCGGCGGTGGTGTTCAT
GTTTTGAAAACAGCAAAGGGGCGCTCCTTGGTTCTTCGATCGAGTTTTCC
CGGCCGAGCGAAGTGGTCGTCAGAGGTTTTTCGTTTTTGTTTGTCTTTAG
ACACTCGTCGGATCAGGTACCTGGGTGTAGAATTTACGGCCTCCTCGAAC
GACGGAATGGTACATGGTGTTTTTAGTATGTGCTATATTGTGTTAAGGTG
GTGGTATTGGGAATTTACCCGACGCTTCGCGCAAAAGAATGAATCATTTA
TTTTTGTCGTGTTTAAAAAAAAAAAACTGTGAGAACACGAACACACGCGC
TGCTGCTGTTTAGGCGGTCGTCGGCCGTGTTTTCAAAAGAACACGGAAGT
GCCGGGTTTGTGTATCATGGTGCGAGTTTTTCGCCTTCGATCTGGTTTTT
GTTTCTCGCTTTTTGTTTCTTCGTGTTTCTTGTTTTGTGGTGCTTTGCCC
TTCCGTCTCTCTACCGTAATCATTTTCTCTGGCCGCCCGATGGAAGGCCT
ACTGCCGTACGCACACAGATTCAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig62:227600..238274-

>mRNA_P-littoralis_Contig62.56.4 ID=mRNA_P-littoralis_Contig62.56.4|Name=mRNA_P-littoralis_Contig62.56.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1569bp|location=Sequence derived from alignment at P-littoralis_Contig62:227600..238274- (Pylaiella littoralis U1_48)
ATGCGTCGGCGGTCGAGGCTTGAGGAGAACCTCGCAAATAGTGGACGATC
ATCCACTCGCCAGTACCTGTTCTATGGGACGATTGGTCTGCTTTCCCTCG
CACTTCCCGCGGCACTGGCCCTCTTCGGACACCGGTTTTTACCCTCCAAT
GCCCCGGCGGATAGCGGTGCAACGCCATACAGCGTCATTGATCCAACACG
CAGCCAAGATGATACTCAGAGGCAACCCCACCCAGGACCAGGGCGAGCTG
TTCCTGCAGATTTGAGGGCTGGTGCAGTGCCTCCGCAGGTGGTGTGGAGA
GGGATAGCCAGCGGGATTGCTTCGCGGCCCGAATCGGTGCACGACATACA
CGTGGTGTTCTCGACGGACTGTTCGCCGTACCAGAACTACCAGTCCATCT
TACTGTTTCAGTCAGCAGAGATGGTGGGGCAGAGGGGCCCCATAACTCGC
GTGGCCAGCGGTTGTACGACAGAGGAAGAGACGGTGCTGCAAGAGCTCAT
GGACAAGCAGCCGGAGAGGTTTCGGGTCCACTTCACCCCCGACTTCAGTC
TGGACCCGGTAACAGGAGAACAGTTCTTGTTCTACAACAAGCCTAACGGC
ATCGCTCACTTTTTGAAGAACGCCGATCCCCCGTTGTCCGAGGCGGTTCT
TGCTCTCGTCGACCCGGACATGATCTTCATGTCGCCGCTCACACCGCGCG
TCGACGACCCCAACAAGATGTTGTGGCACGAGCAGGAACAGCAGACGGGG
CCGGCGTGGGTCGTGGAAGGGACGCCGGTGGGGCAGTTCTACGGGCTGGG
TGGCACGTGGACAACGTGGAAGGATTTACCGGAGATCACGCGGCCGTTGG
GGAATGACTCTCCCGCTTTGAAGGTCACATTGGTAGATGCCCGAGATAAT
TATACCGTGGGACCGCCGTACCTCATGCATCCCCGAGACTGGGCGAGGGT
TCTCGATTTGTGGGTGGCGTTATCGCCGAAGGTGTACAAGGGGCACGCGG
GAATCCTCGCAGAAATGTACGCGTTCTGCATCGCTGCGGCGCATTTGGGG
TTGCGACATCGCGTGGCGTACGGACTGATGGTTTCGGACACGAAGATGGT
AACCCACGAGGGCTGGTCGATGGTCGACGGCCTGGGGACAGACTCTTGCA
ACGCGACCGTCGTCGACGGGCATCGCGGCAGCCTCCCGCCGATAGTGCAC
TACTGCCAGATGTATCGGGTCGGCACGTTCATGTGGGGGAAGCGCCACAA
GAGTCACCACAATTTCTTCTCCTGCGACTCGGACTCGCTCGAGCTGCCCC
CGCCGGGCTACCTGAAGAGCCCCATGGGCACAATCCGCGTGCACCCGGTG
CCCAGGGCCGTGCCGGGCGAGCCGCCCTCGAACATGGAGAGCGTGAGCCT
GGAGACCGGAGTGAGGCAAACCTACGCGCTGTGCGCCGTCCTGCGGGCCA
TGAATGAGGCCCTCGCGGCGTACAAGGGCCGCTACTGTCGACCCGGAGAG
GTTTCCGGAGGCTCCAGGAGGTTCACCGACCTCTCGAAGAAGCAGGTGGA
GGCTGACCCGTACTCGTAG
back to top