mRNA_P-littoralis_Contig62.168.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.168.1
Unique NamemRNA_P-littoralis_Contig62.168.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: D8LUB5_ECTSI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUB5_ECTSI)

HSP 1 Score: 868 bits (2244), Expect = 5.180e-309
Identity = 505/692 (72.98%), Postives = 560/692 (80.92%), Query Frame = 3
Query:  168 PAAGASFVLFSLLQQPRAALAAPLVDHFSPADREAYVEAALRALSDSESSLVDKDYAVRLLAALDNASVASGYKSSACSAAEAGLGSGDLAQIHHGISLAHGVGGCTDTKTWRASEEVVEAMKRDDLRSLYHAVFAAPLLGADVSDKGKVLEKVLDLLGSDGSVRSYPDGPVGAENAFMAAELLAVLVPSVRGDAKKIALSKVEFMKDRVLRHEPALLVQLNRAAGDK-LAVKAGKLKSMARDLLEASRTSSPKSMLGVYEALKAIEEYPKAPLPIKILPASPSVEDLAKGGVSLLITSLLGSPAKVKSVSLFSLQREDGSEALESGGGSPLGAPDAKGFRAVPAVKVSPGVYHAGFSVEVKGGEKPLAANLEIAVGSAAVLAEARVSVSESKDRPSSFESATAAAAVSVESYVLAQPGRTLLPDDARASAADGHHLHVELSLXXXXXXXXXXXXXXQ--PHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAKERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLAVDDAARADATAVAGHTKVD 2234
            P+ GA+ +L  ++  P AA AAPLVDHFS AD +A+VEAA+RAL D++SSL D+DYAVRLLAALD  SVASGY+SSACS A AGL +GDL QIHHGISLA GVGGC + KTWRASEEV +AMK  DLRSLYHA FAAPLLGADV+    VLEKVLDL+GSDGSVRSYP GPV A N FMAAELLAVLVPS +GDAK IAL +VE MKD+VL  EPAL+VQL+RAAGDK LA+KA KLKSMARDLLEASRTS PKSMLGVYEALK IE YPKAPLPIK+ P+SPSVE+L+ GGVSLL TSLLGSPAK+KS SL SL R DGS+A   G G  LG P A GFRA+P+V V+PG+Y A F+VEV+GGEKPL A L +AV S A LA ARVSVS+S +RP S ++       S+ESY LA+PG+ LLP+DA ASA +GHHLHVELSL  XXXXXXXXXXXX   PHQVFV FTHVETG+DTFFVAAP+ G     A EFAVSVSLGEESQTF QRSG Y+VTALVGG LV PP+S  LG+I L F  AKERKWPIYAR LLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFT L LAPLAGL YGMRRGGA+L RL +AG GRAWCAA+QACMVG VLLF TYWA LTMAYTLRVLAVLSV T +TGRKALQ+LAV D     A     H K D
Sbjct:    5 PSRGAAPLLLLVILGP-AARAAPLVDHFSAADGDAFVEAAVRALGDADSSLEDRDYAVRLLAALDKPSVASGYRSSACSVAAAGLSNGDLEQIHHGISLADGVGGCANAKTWRASEEVADAMKSSDLRSLYHATFAAPLLGADVTQGDTVLEKVLDLVGSDGSVRSYPSGPVEAGNTFMAAELLAVLVPSAKGDAKAIALREVEVMKDKVLGAEPALVVQLSRAAGDKKLAIKASKLKSMARDLLEASRTSLPKSMLGVYEALKLIESYPKAPLPIKLRPSSPSVEELSSGGVSLLATSLLGSPAKIKSASLSSLSRADGSDASGDGDGG-LGEPGADGFRALPSVDVAPGLYTAEFAVEVEGGEKPLVAKLPLAVSSGADLARARVSVSDSHERPLSADA-------SIESYPLARPGKDLLPEDAHASAGEGHHLHVELSLEGXXXXXXXXXXXXXXAPHQVFVCFTHVETGMDTFFVAAPLGG----EASEFAVSVSLGEESQTFAQRSGEYAVTALVGGPLVAPPISERLGSIRLGFSEAKERKWPIYARPLLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTALVLAPLAGLAYGMRRGGADLRRLPAAGAGRAWCAAYQACMVGVVLLFVTYWATLTMAYTLRVLAVLSVVTTVTGRKALQSLAVADEGARRAADSGNHIKGD 683          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A6S9FJW3_HETAK (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FJW3_HETAK)

HSP 1 Score: 189 bits (481), Expect = 1.170e-47
Identity = 202/652 (30.98%), Postives = 298/652 (45.71%), Query Frame = 3
Query:  279 EAALRALSDSESSLVDKDYAVRLLAALDNASVASGYKSSACSAAEAGLGSG--DLAQIHHGISLAHGVG--GCTDTKTWRASEEVVEAMKRDDLRSLYHAVFAAPLLGADVSDKGKVL-----EKVLDLLGSDGSVRSYPDGPVGAENAFMAAELLAVLVPSVRGDA--KKIALSKVEFMK---DRVLRHEPALLVQLNRAAGDKLAVKAGKLKSMARDLLEASRTSSPKSMLGVYEALKAIEEYPKAPLPIKILPASPSVEDLAKGGVSLLITSLLGSPAKVKSVSLFSLQREDGSEALESGGGSPLGAPDAKGFRAVPAVKVSPGVYHAGFSVEVKGG-----EKPLAANLEIAVGSAAVLAEARVSVSESKDRPSSFESATAAAAVSVESYVLAQPGRTLLPDDARASAADGHHLHVELSLXXXXXXXXXXXXXXQPHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAKERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLA 2177
            EA L  +++S    V+   AV+LL  L+  +V+  +K+S CS++   L S   D+   ++ +S  + +G    + + T + +   +  +    L  LY AV    +L  + S +GK L     +  L  L ++G      +G     N++    +L  L+ + + DA  +++A++ +E++    D  +     L   ++   G KL  K+ + +++  DL+    T S  + + VY A +A    P APL +K LPAS      A   V + +  LLG+PA V  V+L  L  ++G E        P  A  A  F    A++  P  Y     V    G      K L   + + V   AV  +A                   AAA S E     +  R      ARA+AA GH L V   +               PHQ FV+  H ETGL T+FVAAP        AG    +V L EE+ T + RSG Y V   VG A+    V A+LG +EL       +  P+Y RALL+E+D +L  LPEK HTFR P  R H  ++ LF +   A  A L   +   G NL  L++ G   AW  AFQ C+   +LLFA YW  LTMA  L  LA L++AT   G +AL  LA
Sbjct:   40 EAVLNDITNSSPGKVNS--AVKLLLDLEG-NVSDAHKASVCSSSANHLFSAGQDVKTAYYALSTTNLLGCPPASASDTTKTAMTTLLGLSDPSLNELYFAV----MLDLE-STQGKTLNLGAVKASLADLSNNGLYADDVEGVATISNSWRVLNMLQALLGAFQNDADLEQLAVAHLEYLPTAADDDIADAKLLAGLVSLQPGLKL--KSKQTRAIVGDLVALKHTPSVCTAMKVYRAFRAAATLPNAPLVLK-LPASTVAYAKAGVSVDVQVQDLLGAPAAVGEVALAHLVSDEGDEDAAR---RPFAARGADLFSQTLALE--PAAYQLDVEVATAAGGKAKFRKRLVVTIPLEVRGVAVGVDA-------------------AAAPSGEG----EEWRGRFGPGARAAAAAGHWLQVAFDVVDAEGQAFA------PHQAFVQLVHAETGLATYFVAAP------DGAGRLRAAVRLAEEAPTLMHRSGTYRVALQVGDAVAAAAVGADLGEVELALPAENVKDPPLYKRALLYESDTTLAALPEKQHTFRPPARRGHPALASLFALAVAAAGAVLVGALLAAGGNLRGLAALGAAGAWALAFQGCLGATLLLFALYWLRLTMAACLTYLAPLALATMFVGHRALAALA 640          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A7S2UXS1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS1_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.280e-40
Identity = 101/265 (38.11%), Postives = 138/265 (52.08%), Query Frame = 3
Query: 1431 LPDDARASAADGHHLHVELSLXXXXXXXXXXXXXXQP----HQVFVRFTHVETGLDTFFVAAPVEGGGSK---------------AAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAKERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQ 2168
            LP    A+  +GH +H++  +               P    HQ FVRF HVE+G+DTFFVA P+ G G +                    A  +++ EES++F  RSG Y V  L G  +V       LG++ L  +  K R+WP+Y+RALLH++DV+L PLPE  HTFR+P+ RP   VS LFT+   A    L  G++R GANL  L S G        FQ C+   + LF  YW  LTMA+ L +L  L++ T   G KAL+
Sbjct:  142 LPSGVSANGLEGHWVHLQFQVASAAPASSSPAAAQAPALVPHQAFVRFHHVESGVDTFFVAQPLRGAGEEDXXXXXEGLDLDQTVGGSLVAAHLNVAEESESFQHRSGEYEVFLLAGDGVVTEAQEVPLGSLHLTVIAEKVREWPLYSRALLHDSDVALAPLPEIQHTFRQPDARPAKVVSALFTLGVGALQLVLLGGLQRAGANLTTLPSGGASLIVAVGFQGCLGAILALFGVYWLRLTMAHCLTILLPLAIVTMFFGHKALK 406          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A835Z9H4_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9H4_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.040e-38
Identity = 212/708 (29.94%), Postives = 302/708 (42.66%), Query Frame = 3
Query:  213 PRAALAAP--LVDHFSPADREAYVEAALRALSDSES--SLVDKDYAVRLLAALDNASVASGYKSSACSAAEAGLGSGD-LAQIHHGISLAHGVG-GCTDTKTWRASEEVVEAMKRDDLRSLYHAVFAAPLLGADVSDKGKVLEKVLDLLGSDGSVRS--YPDGPVGAENAFMAAELLAVLVP------SVRGDAKKIALSKVEFMKDRVLRHEPALLV----------------QLNRAAGDKLAVKAGKLKSMAR---DLLEASRTSSPKSMLGVYEALKAIEEYPKAPLPIKILPASPSVEDLAKGG----VSLLITSLLGS-PAKVKSVSLFSLQREDGSEALESG--GGSPLGAPDAKGFRAVPAVK----VSPGVYHAGFSVEVKGGEKPLAANLEIAVGSAAVLAEARVSVSESKDRPSSFESATAAAAVSVESYVLAQPGRTLLPDDARASAADGHHLHVELSLXXXXXXXXXXXXXXQPHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTAL-------VG-----GALVLPP-VSAELGAIELLFLGAKERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKAL 2165
            P AA  +P  + +H + AD +++ + A   L       SL D D+A+R+L  LD  +   G+    C AA  G+  G  L+ I+HGI +A  +G G  D+ +  A + V + +    L  LY+A   +   G+   D   ++++V  L+ S G V     PD     +NA+ AAELLA+L        + R DA     +    +           L+                 L R     L   A +L S+ R   D   A R         V+ AL+A+     APL +   P S S   L  GG      L + +LLG+ P+ V  + + SL R  G++A E    GG  + A  A     V   K    V+PG Y A  S+    G +    +  + V  AA +A  R +V+                            G  +    A+A A D   L V  +L               P Q  VR  H  +GL T++ +A   GGG++  GE+A +V L +E+     RSG Y +  L       VG     G +VLP  V   +GA+ + F   K ++WP+Y R LLHE+DV+L  LPEKHHTFREP+ R  A + +LF  L  APLA     +RR G   ER S    G  W                 YWA+LTM   L+ L  L   TA  GRKAL
Sbjct:   19 PPAAFGSPVRINEHLTAADLDSWRKTAQDTLQAGPELRSLSDADHALRILTNLDAGAEEFGHIW--CGAAAVGMHGGQGLSSIYHGIQVAEALGCGIPDSLSTVARDLVAQGLYGTKLEGLYYAALVSQKKGSPPLD---LVKRVAVLVESSGLVAGDDTPDSLPTQDNAYPAAELLALLAELAPADSAARADAAHALANIASLLPSXXXXXXXXXLLLHPLTSTPXXXXXXXPALERGGAALLRAAAAQLLSLRRCGGDAAAAWR---------VHAALRALAARADAPLAVAFAPPSVSAGALRSGGGGAAAGLSVRTLLGAEPSDVAGIVVRSL-RPHGTKAGEENLLGGPVVAAAAAASGTGVWTAKGLESVAPGRYIAEVSIARGDGAQEETVSAPLVVTGAASVAAVRFAVN----------------------------GEDVRGGRAKAGARD--RLSVAFALEGDVAA---------PQQCSVRLRHAASGLSTYY-SAQRSGGGARP-GEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPERPS----GGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKAL 666          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A7S1XSU1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSU1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.640e-24
Identity = 79/216 (36.57%), Postives = 107/216 (49.54%), Query Frame = 3
Query: 1440 DARASAADGHHLHVELSLXXXXXXXXXXXXXXQPHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAKERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLA-GLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYW 2084
            D  A A +GHH+HV   +                 Q FVRF HVE+ ++TFFVA     G       +  S +L  E++TF+ +SGAY ++ ++G AL+   +  ELG + L F    E+  PIYA  L HETD +  PL EK HTFR+P   P   VSL F  LA AP A  + +G +   AN+   +  G G      F   +    LLF  YW
Sbjct:  217 DHEALAIEGHHVHV---IFETEPAAGAAALPAAAQQTFVRFRHVESDVETFFVAQSRRKG-KGGVYHYEASAALAAETETFMHKSGAYEISIIIGDALLGEMLVRELGTMALEFPKKSEKILPIYAETLSHETDTTTVPLEEKWHTFRDPPKMPPTIVSLFFAALAAAPAALFIAFGPKTANANVANATPEGHG------FVGAIGAIFLLFGAYW 422          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: T0PYQ3_SAPDV (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PYQ3_SAPDV)

HSP 1 Score: 100 bits (249), Expect = 4.750e-19
Identity = 81/214 (37.85%), Postives = 113/214 (52.80%), Query Frame = 3
Query: 1542 HQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAK--ERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLA 2177
            HQ F+RFT  +  +DT FV        S    + +VSV +G ES+ F   SG ++V  ++G       +  +LG+++L  LGA   E   P+YA+ LLHE+DV+L  LPE  H  R  + RP   VS LFT++ ++PL G    +   GA L +  S G    +   F A M   + LF  YW  LTM  TL  LA+L+V T   G +AL  LA
Sbjct:  157 HQAFLRFT--QGAVDTMFVLLA-----SADKKKLSVSVQIGAESKKFSYLSGVHAVQLILGDTTFENAIVWDLGSVDLT-LGAAPIEPLSPLYAKPLLHESDVTLTALPEIEHVMRAQDSRPSLVVSNLFTLIVVSPLGGFVLFLLGFGAKLSKFPS-GVQALFALGFIASMASILGLFVVYWLQLTMFATLGYLAILTVVTLFFGHQALGHLA 361          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A1V9Y5P6_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5P6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.910e-18
Identity = 84/233 (36.05%), Postives = 118/233 (50.64%), Query Frame = 3
Query: 1542 HQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAK--ERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLAVDDAARADATAVAGHTKVD 2234
            HQ F+RF+  +  +DT FV        S    + AV V++G ES+ F   SG ++V  ++G       +  +LGA+EL  LGA   E + P+YA+ LLH++DV+L  LPE  H  R  + RP   VS LFT++ +APL      +   GA L +  S G    +   F   M   + LF  YW  LTM  TL  LA+L++ T   G +AL  LA        +TA    TK D
Sbjct:  158 HQAFLRFSQGD--VDTTFVLTA-----SADKSKLAVKVNIGAESKKFSYLSGIHTVQLILGDTTFENAIVWDLGAVELT-LGAAPIEPESPLYAKPLLHDSDVTLKALPEIEHVMRAQDSRPSLAVSNLFTLVVVAPLGAFIIFLLGFGAKLSKFPS-GFQAIFALGFIGSMASILALFVVYWLQLTMFATLGYLAILALVTIFFGHQALGHLA------RTSTAAGPKTKKD 375          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A2D4CKF3_PYTIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKF3_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 1.060e-16
Identity = 84/264 (31.82%), Postives = 123/264 (46.59%), Query Frame = 3
Query: 1452 SAADGHHLHVELSLXXXXXXXXXXXXXXQPHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAK--ERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLAVDDAARADATAVAGH-TKVD 2234
            S+  G  LHV++++                HQ F+RFTHV+  ++T+FV  P       A    +  +  G  S+ F  +SG + +  +VG       +  +LG +ELL LGA   +   P+YA+ +LHE+D +L  LPE  H  R  + RP   VSL F+    AP       + +   N+ +L  AG    +   F A +     LFA YW  LTM  TL  L  L  A    G   L+ LA      A A++++GH TK D
Sbjct:   68 SSGSGDALHVQVAVQSQLDKSPVAA-----HQAFLRFTHVQDNIETYFVLTP-----DAAKKTLSTQLHFGSLSKKFSYKSGDHRLQLIVGDPTFERGLVWDLGTVELL-LGAAPPQAPSPLYAKPMLHESDTTLKALPEIKHVMRPQDPRPPIAVSLAFSAAVAAPFLFFLLFVLQLRLNISKLF-AGANFVFGVGFLASLAAIFALFAWYWIELTMYTTLGYLGELGSAALWLGHLTLKRLA-----NASASSISGHKTKHD 314          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A8K1C5C4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5C4_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 1.670e-16
Identity = 78/214 (36.45%), Postives = 109/214 (50.93%), Query Frame = 3
Query: 1542 HQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAK--ERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLA 2177
            HQ F+RFTHV+  ++T+FV  P       +A   +  ++ G  S+ F  +SG + V  ++G       +  +LG +ELL LGA   +   P+YA+ LLHE+D +L  LPE  H  R  + RP   VSL F    LAPLAG    + +   N+ +L  AG+   +   F   +     LFA YW  LTM  TL  LAVL  A    G   L+ LA
Sbjct:  177 HQAFLRFTHVQEKINTYFVLTP------DSAKVHSSVLNFGALSKKFSHKSGNHKVELIIGDPAFEKALVWDLGTVELL-LGAAPPQAPSPLYAKPLLHESDTTLKALPEIKHIMRPQDPRPPIVVSLAFAAGVLAPLAGFLLYVLKLKLNISKLF-AGSVFVFGVGFLGSLGAIFGLFALYWIELTMFQTLGYLAVLGSANIAFGHLTLKRLA 382          
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Match: A0A1W0A5Q1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Q1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.160e-16
Identity = 75/214 (35.05%), Postives = 112/214 (52.34%), Query Frame = 3
Query: 1542 HQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAVSVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAK--ERKWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPLAGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTMAYTLRVLAVLSVATALTGRKALQTLA 2177
            HQ F+RF   +  +DT FV A      S    + +  +++G ES+ F   SG +SV  ++G  +    +  +LGA++L  LGA   E + P+YA+ LLH++DV+L  LPE  H  R  + RP   VS LFT++ +APL G    +   GA L +  S G    +   F   +   + LF  YW  LTM  TL  L+++  A+   G +AL  LA
Sbjct:  155 HQAFLRFNQGD--VDTTFVLAT-----SADKTKLSAKINIGSESKKFSYLSGVHSVQLILGDTIFENALVWDLGAVDLT-LGAAPIEPESPLYAKPLLHDSDVTLKVLPEITHIMRPQDSRPSLAVSNLFTLIVIAPLGGFVLFLLGFGAKLSKFPS-GFQAIFALGFITSIASILGLFVVYWLRLTMFATLGYLSIVGCASLFFGHQALGYLA 359          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB5_ECTSI5.180e-30972.98Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A6S9FJW3_HETAK1.170e-4730.98Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S2UXS1_9STRA3.280e-4038.11Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A835Z9H4_9STRA1.040e-3829.94Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S1XSU1_9STRA2.640e-2436.57Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
T0PYQ3_SAPDV4.750e-1937.85Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A1V9Y5P6_9STRA2.910e-1836.05Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A2D4CKF3_PYTIN1.060e-1631.82Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A8K1C5C4_PYTOL1.670e-1636.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A5Q1_9STRA3.160e-1635.05Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:676451..685029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LUB5
PFAMsRibophorin_II
Model size2291
Max annot lvl2759|Eukaryota
KEGG koko:K12667
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Exons5
Evalue5.68e-310
EggNOG OGsKOG2447@1|root,KOG2447@2759|Eukaryota
Ec32 ortholog descriptionRibophorin II (Oligosaccharyltransferase, delta subunit)
Ec32 orthologEc-14_004370.1
Descriptionprotein N-linked glycosylation
Cds size2088
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.168.1prot_P-littoralis_Contig62.168.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 676505..684880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.5323064-UTR-P-littoralis_Contig62:676450..6765041680791295.5323064-UTR-P-littoralis_Contig62:676450..676504Pylaiella littoralis U1_48UTRP-littoralis_Contig62 676451..676504 -
1680791295.6050618-UTR-P-littoralis_Contig62:684880..6850291680791295.6050618-UTR-P-littoralis_Contig62:684880..685029Pylaiella littoralis U1_48UTRP-littoralis_Contig62 684881..685029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.548209-CDS-P-littoralis_Contig62:676504..6776891680791295.548209-CDS-P-littoralis_Contig62:676504..677689Pylaiella littoralis U1_48CDSP-littoralis_Contig62 676505..677689 -
1680791295.5575655-CDS-P-littoralis_Contig62:678247..6784271680791295.5575655-CDS-P-littoralis_Contig62:678247..678427Pylaiella littoralis U1_48CDSP-littoralis_Contig62 678248..678427 -
1680791295.5667088-CDS-P-littoralis_Contig62:680422..6806331680791295.5667088-CDS-P-littoralis_Contig62:680422..680633Pylaiella littoralis U1_48CDSP-littoralis_Contig62 680423..680633 -
1680791295.576093-CDS-P-littoralis_Contig62:681046..6811711680791295.576093-CDS-P-littoralis_Contig62:681046..681171Pylaiella littoralis U1_48CDSP-littoralis_Contig62 681047..681171 -
1680791295.5881262-CDS-P-littoralis_Contig62:684493..6848801680791295.5881262-CDS-P-littoralis_Contig62:684493..684880Pylaiella littoralis U1_48CDSP-littoralis_Contig62 684494..684880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.168.1

>prot_P-littoralis_Contig62.168.1 ID=prot_P-littoralis_Contig62.168.1|Name=mRNA_P-littoralis_Contig62.168.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=696bp
MRLLFRPAAGASFVLFSLLQQPRAALAAPLVDHFSPADREAYVEAALRAL
SDSESSLVDKDYAVRLLAALDNASVASGYKSSACSAAEAGLGSGDLAQIH
HGISLAHGVGGCTDTKTWRASEEVVEAMKRDDLRSLYHAVFAAPLLGADV
SDKGKVLEKVLDLLGSDGSVRSYPDGPVGAENAFMAAELLAVLVPSVRGD
AKKIALSKVEFMKDRVLRHEPALLVQLNRAAGDKLAVKAGKLKSMARDLL
EASRTSSPKSMLGVYEALKAIEEYPKAPLPIKILPASPSVEDLAKGGVSL
LITSLLGSPAKVKSVSLFSLQREDGSEALESGGGSPLGAPDAKGFRAVPA
VKVSPGVYHAGFSVEVKGGEKPLAANLEIAVGSAAVLAEARVSVSESKDR
PSSFESATAAAAVSVESYVLAQPGRTLLPDDARASAADGHHLHVELSLKG
AAGAGAAAAAAPQPHQVFVRFTHVETGLDTFFVAAPVEGGGSKAAGEFAV
SVSLGEESQTFLQRSGAYSVTALVGGALVLPPVSAELGAIELLFLGAKER
KWPIYARALLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTVLALAPL
AGLGYGMRRGGANLERLSSAGTGRAWCAAFQACMVGFVLLFATYWAALTM
AYTLRVLAVLSVATALTGRKALQTLAVDDAARADATAVAGHTKVD*
back to top

mRNA from alignment at P-littoralis_Contig62:676451..685029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.168.1 ID=mRNA_P-littoralis_Contig62.168.1|Name=mRNA_P-littoralis_Contig62.168.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8579bp|location=Sequence derived from alignment at P-littoralis_Contig62:676451..685029- (Pylaiella littoralis U1_48)
GAGCTTTCCTGCTTGCAAAAAAAAACACACAGGCGTCTGCATCCTCCAGG CTTTGGTGTCACAGGAGGCACGCAAACACGCACGTACACGCACAGGAGAC GAGACAGACAGGGTTTCAACCCCAACGCAAAGGACTAAAAAGAAAAACCA TGCGTCTGCTTTTTCGACCGGCGGCGGGAGCCTCCTTCGTACTCTTCAGC CTCCTCCAACAACCCCGAGCCGCCCTCGCAGCACCCCTGGTCGACCACTT TTCGCCGGCAGACCGGGAAGCCTACGTGGAAGCCGCCCTGCGCGCTCTGA GCGACTCTGAGTCGTCTCTGGTCGACAAGGACTACGCAGTGAGGCTCTTG GCGGCGCTGGACAACGCTTCCGTGGCTTCCGGGTACAAGTCCTCGGCGTG TTCAGCGGCGGAGGCGGGGCTTGGAAGCGGCGATCTTGCGCAGATCCACC ACGGGATCAGCCTGGCTCACGGGGTCGGCGGCTGCACGGACACTAAGACG TGGAGAGCCAGCGAGGAAGTCGTGGAGGCCATGAAGGTATGTGCGTGGAT GATCGGGGGGTCGTGCGGTAGGTAGGTGGTGACAGTGTGCGTGCGCAGTG TTCAGCAGCGGTTTGGGGACGCTCTGTCTTGTCTTGTGGGGCGAGATATT CTCTTCTTTATTAGCACTACAGCAGTTTCTACGGACGGTTGTTTCTACTT GTACTTGAGTACCGGTACTTCGTATCATACGCTGTAGCGGCAGCGGCAGC AGCAGTCGAAGTCATCGAATCACTTTTATCAAACGAAGCGAGTCTACCGG TAGTCTTCGTAATATCTTATTCCGAGTACAGTACTTCGAAGTACTTTACC TATCAGGTATCGTATACTTCGTATATGCATATCATGGCGGCTGTGTCCCA AACTCCAAACAAAGATCGGGGGCACGTGTGTACTCTCACAACATTTCTTA CAGTCTACGGTGGAACTGAAGCACTACTGTACTGCTGTACGAAGTACCTG TAGCTCATGTTCCGAAGCGGCTGCCTCTTCTTGTCGTTGTGCTGCTGTAC TAGTGAACTTGTACTGCTGTATGCATCAAGTATCATACCGCTCGATGTCG AGTGTCCCCCGGCTTCTTTCTGAGGAAATATAGCTGCTGTTTTACATAGT ACTTGAAGTTTTTGAGAGTTGTCCTGAAAAGCCGCAGCAGCAGCAGCAAC AGCACAGCAGTACCGTATATGACACAAGATAACACACCCCGTGTTAGGTT TTTTGCATTCCGTATTACTCCACAACCAGGAGGGTGCGAACATCAAACAG CCCGTCATACGAAAGCTCTCGACGAGATTTTTCCAAAACCACCCTTTTCG GCAGTGGCACCCTCCTGGTCGTGGAGCTATACGGAATGCAAAAAGCTTAA CACGGGGTGTGTTATCTTGTGTCATATACGGTAGTGCAGTAGTGCATTCG AAGCAGCTTTGCGTGTTTTGTGATCTCGGTATGAGAAGTGCTTGCTTTGT GTGGACGAGTGGACGACCATCCCGCCCACCTTCTTTTGGGCTTGATGATA TCATCATATACGAAGCATATCATTTGTACAGAGTTGTCCATAAATATATG GATGATACTTGGGTACGTATATTGTTGATTCTCACATTAGCTCACTACCG CCGCAGTCTAGCCCGTGGTTACAAACCAGGCACGTATATATACGGAGTAC TTGAAATATATGATATCATAGTATCCGACGATACATGGATCGTCCATCTC GCTCTCTATGGGTCCGGTTCCAAAAAGGGGTGTGGCGAACAGACATAGTG AGATAAACTTTGGGATTAACAACACAACAGGTAAATCTATGTATTATCTG CTTGTTTCTAATCTACTCTAGATCCTCGCCTGGAGGAAGGTTAACACATT GATGTGTTTGCAGAAAAAAAAAAATGATTCCACGAGCGAAGAAACAACAC AACCGGTCGCCCCGGTGGACTAGTGGTCCCCTCGTTAACCACTAGATGCA GAGGAACGGGGTTCGATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAA GCGGCTATGCTGTTAGTAAAAGCAGATTCGGCTTCACCGACGAGGGTAGG GACCGCGGATCCCTGCTCGCGAGAAAAAAATCTCACGCATGTACCGCAGG AGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTTCTCCTGTGTGACCC CGTCGATGGGCCTACCCTGTACTTTGAACCGCAGGGTGCAGACTAGTGTG CCAGAGAATATAGGATGACAACACACACAACAGGTAAATTTACAACAACG GAGCTACGGAGTATTTGCGTTCGTTGCTAATCTGATGTAGATCCTCCTCT AGAGAGAGGAGAACACATTGATGCGTTTGTAGAAAAGTAAAAATAAAATC AAGAGAACTACTAATTTGTACTTCTCTGTTGTTGGATACTGCTGCTTTAG TATAATAAATCATACGTAGCGGGCACAGCAATCCATTTTCTTTTATTTTT CTACAAGCAAATCAATGTGTTCGCCTCCCTCTATATAAGCAGCAGAAGAG GATGTAGATGCACTTTCTGCTGTAGTTGAATGGTTTGGTATGATATGTTC AAGTGCTGTTTTTTATTTTTTTAGCAACTAATCAATGTGTTCGCCTCTCC ACAAGAGGATCTTACAGCAGTAGATTGGCGACGAACGCAGAGAATAATAA TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA ATAATAATAACACATCTACAGCATCAGTTGTGTTGTCCCTACACTCATCA TCAAGCTATTGTGAGAAGAGGGAATTGTCCTCGACAGACGATGGGGTGCT CTGCACCCGCTACGAAGGTTGCTCACTCCTTTTTAGGGAGGTTGCCTCTA CATCCATCATCTATCGTGTCATATCACGATGTATGATAGCTTGTCCTTCA TGGTACAAGTATGCAAATGGTCGCCTCGTCGGTCTTCCCTGCACCACTGC CCTTTTCTATCTCTCCTTGCCAAGTCTACGGAAGAAAACGTTAATATCCA CACGCAACCCAACACTTCACAAAGTAAATGAAAAAAACAATTTTTACAAA AATTCCTCTGGAGAGAGACGAACACATTATGATGCGTTCTTAAGTGAGAA AATTGAAAAATAAAGTAAATCCGGGGTCCTCAGGAATACTGTACAGCTGT GGTGCAGTGGCTATATACTTTGCGGCAATGATGTAGCGTGTGCCACACAA CATGACCACTAAATTGTCTTGTTGAGCCTGATAACCTCACGGGGGCTGCA ACGGTTCATCTTGTCTAATGATGAGTCTGAAGAAACACAGGGGGTGGCAG ATGTATTTTTTCCCTTGTGTTCATTGCTGAACTACCCTAGATAGATGATT GTCTGGAGAGAGGCGAGCACATCATGTGATTGTGAGGAGAAAAAAACAAC GCTTCGTATGGTACGAAGTACGAATATCATACGTACAAGTACGAGCATGA CACCTCCAAGTACAAAATAAACATAAATATAAATTGCAAAAAGCTTCATA AATACTCGAAGTATTAGTCATGGAGTGGACGCCCCCCGTGACGTCTTGTC ATGTTACATGGAGGTACTGTTGTGAAATCGCTCCGTGGGTACGGATGGAC CGCCTGACAATACGCAAGAGTATGTATTATTTCACACGGCTTATAAAACC CACTACTTTAGGCCAACGACACTACCACTACACCTGCACATGTATCACAC ATTTTTTGGTATGATGGGACACGTGGTACATATCATCTCCCGCATACTCC TGTATCAACCTACCCCCCCCCCCCCAAACCTCTCACAAACCCCCCCCACC ATCTCCAGAGGGACGACCTGCGGAGCCTCTATCACGCCGTCTTCGCGGCG CCTCTGTTGGGGGCCGACGTGAGCGATAAGGGCAAGGTGCTCGAGAAAGT TTTGGACTTGCTCGGGTCGGATGGGTCGGTCAGGTACGTGTGTGTCACGT CGTAACGTAGCCGCCGCCGTCGACGTCATCGTCGTCGTCGTGTTGTTGTT GTTGTCGATATTGCTGCTGCTGCTGCTGCTGCTGCTGGTGTTGGTGTGTC TTCGCTTACACAGTCAACAAGGATATGAATATTTTTTTAATCTCTACCCA CAGACAGCAGTGCTACTTTTACGCCGTCCGTAACTATTTGTGCCTTCCAT TGGTCCAACTAGCTTGCAACAAACCTCTCGAAATGGAGTGTTCGCGACGC GACCGCGATGTTATACTGCAACAAAAAAGGTTCTTTTCAACACAAGAGGT ACAACAATAATAATGCCTCTGATGATACAACGATAAAATCCGACAACACT CTTGATACTTTGCCCCCCTCCTCGCGTAAAAAAAAAACGCGAAAAGGAGC TACCCCGACGGTCCCGTTGGGGCCGAAAACGCCTTCATGGCGGCCGAGCT GTTGGCAGTGCTGGTGCCCTCTGTTAGGGGGGACGCCAAGAAGATCGCGC TCAGCAAGGTGGAGTTCATGAAGGACAGGGTGCTGAGGCACGAGCCAGCC CTGCTGGTGCAGCTGAATCGCGCCGCGGGCGACAAGTTGGCCGTCAAGGC GGGCAAGGTTTGTTTATCATTGCGTGTGGTGTGTGAGTGCACGGTGTGTT ATATATGTGGTTTTGTGGTTTTTTTTTTTGTGCCGAAAATCACGCCAACG GGGGTGTCTAGTGATAACATGATAGCATTACACTTGTTTTAGTGTCGAAA ACTGAATGAATGGTGACCATTTTTGCTATTTGTTATTTTATTTTATTTTA TTTTAACAATTTTTTTTTAATTCCGCGCATAAACCTGATATTTTGAACCC GTGATCACGGACGAAGGCTCGTCTTCCCGTTCTGTCTTTCTACCTTACAG CAGTCACTTAGCGCTAGGACTGAAACAGGATAGGGAAGCATCAAAGGCAG AAGAGGACGTAAACCTCTCGCGAGCTTGTCGGAAGTGGGAGAAAAAGAGG AATGGTATCAAATCAGAGAGAGAGAGACGTCTACCCGTGAGAGACAGAGG AGGACAAAACCCTCCGCCCAAGCTTTTGTTTGAGGTGGAGAAATAAAGTA CGAAGTAGTATCAGGTTCGCTCCGCCCAGAGAATCCACGAAACTCGGGTG ACGTGAAACAATCAAGAAAAAGCATCTATATGGCAAGCGAGAATCATGGT AAGCATTCCCACGGGTACCTGCATCTAGGTGTTGGTTGGCTTTTTTGCTC TACTTTTGCGACGTTCGATCGAAACTGCGGGCACCTTTTATCTCCCTCTC TATGACTGAACAGCAAAAACATATATGGTGGTCCAGTCTGCCATCTACTT GTCGCCCCCCCCCCCCCAACCCGGAACCACTCGGGCAGACGTTGAGCGGT GTGTCCGTGTCGTTACGTCGACCTTGAAGGCGGAGCAGTCTTGCCTGACG CCATGTCGGAGGCATTTTTTTATGCGGACTGGCCTGTCTGTCCTCGTTCC TCTGTTTCCCTCCAACCATGTTTGTCGAGCGATTGGCCTTCGTGCGTGCG CGACGCGGCCGGCGTAGAGTAAGAGTAGGCAGGATTCGCGTCGCCACGGT ATGAAGCCTTTCTTGACGCAGTTGCAGTTGCAGACAGTGCTTCTTGTTGA GGACCGCCCGCGTGGTATGGACATCGCGTGGTAGTCAGAGGCGCTGCTGT GGGGTCGAGGTGTACTCGTGGAGGATCCTCAGCGAGAGTCCGCGGTGGCC TGGTCTTGTCTCAGCGCCCCGAAATCATCGGGCGAGAGTCTAGGTCACGC AGCCGTATGTTGTCAATTGAGGCTCCTTAGCAGGAGTCCTCGGCGGTCTT GCCTCGGCGTTCCGAGATCATGGAGCGAGAGTCCAGGTCACGCAGCCGTG TACGATAGCGCGACCTCGACTACTTCTGCCTCCTCGGGAATCGAGTCTTC CCGGCTCCTACAGTCGCTTGAGCTGACGTCGCCAACGCTGTTGATGGCGC CAGCGAGATTGACGAGAGTCTCGACCCGACTCGGTTGTGCCTTCGTCCGG CGGCCGCCACCTCATCACGTCACTTCCGCCTTCCATGTTTGAGGGGGGGG GGGCGCACGTGAATCGTTTCTGGCTTTCCCCCCACACTTGCGAGGCGAAA TGCCGCCGCGCAGACCTCTACGATGGATGGCCGTGATCCTGTTTGCCGGG CTCGACAGATCGCGAAGCGAAGCCAGCACTATCGACGCACAGTAAAGCAT AGCCTAGATTACTCTCTGGAGCTGCTCACCCCTGGTCGTCCCGCTCGCTG CGCTGCGATTTGAATTACGTCGCCCATCACCAGCAGTGCTGTAGTATTGT CCATCGTGAAGCGATCGAGCGCCACGGTCTTCACCACCGCGAAGGAGCCA TTTTAAGACACGGAGCAAATCACGCGACCCTCACGCCACCGCGCGCGTCA ATGTATTTGTTTTTTTTGTGTGTGTGGTGAGAGTAGCAGCGCCTGCAGAG ACTGGCTTTCTGAATACGCCGCTTCTGCCCACAGCGCCTTGATTTGTTAC TCCTTCCCTCGCCCCCCCCCCCCACCCCAACCTCGCGTGACCCCCGCGCC AGCTTAAGTCTATGGCACGAGACTTGCTGGAGGCGAGTCGCACGAGTTCC CCCAAGAGCATGTTGGGGGTGTACGAGGCCCTGAAAGCCATCGAGGAATA TCCGAAAGCGCCGCTCCCGATCAAGATCTTGCCGGCATCGCCTTCTGTGG AGGACCTGGCGAAAGGTGGTGTCTCCCTCTTGGTAAGTGGGGATGGTCAA AGAGAAATACGAGGTGTCTCTCTTTTCTTGTTTTTGGTAGTTGGTGACGG CGGCAGCGGCAGCGGCAGCGGGAGTGGCAGAGGGAGTCTCCGCTGGTTTT GATGGATTGCTCTAGTTCGGCTGTTCACTCCCGTGATCGTTGTTGTTGCT GCTGTTGGCGGTGGTGGTGGTGGTACTGGTGGCGGCGTTGCTTGTCTGTC CATTTTGAGGTGGTTTGTACAACCCACCGCTGCTGTTTTGAGCTCTCCGC GTTCTGCCTGCTACCACCCTGAGTACCTCGCCTTGCTCTCGAACGAACCA ACAGCAGCATCACCACCGCCATGATCGGAATTGTGGTGTGCATGCATGTA CTGGTGTGTCATACCGTCATGGTGCGGGCGGACGTACGCACGTACAGCTT ACAACGCGACCGCTCGTGTCGAACCAGATCCTTTTTGTTGTGACCGCTCG CTGGCTCATTCTTTTTTTTTGCTATGACACATTCCTCCGCTTGCTCATTC TTTTTTTTATACTTGGAATAAATATTACATGTAAATTCAGATAACGTCCT TGCTGGGGTCTCCGGCGAAGGTGAAGTCAGTTTCGCTCTTCTCCCTCCAA CGCGAGGACGGGTCGGAAGCCCTGGAGAGCGGCGGCGGCAGCCCCCTGGG CGCCCCCGACGCCAAGGGGTTCCGCGCAGTGCCGGCCGTCAAGGTAAGCC CCGGCGTCTACCACGCCGGGTTTTCGGTTGAGGTCAAGGGCGGGGAGAAG CCCCTGGCGGCTAACCTCGAGATCGCCGTCGGGTCCGCCGCGGTCCTGGC GGAGGCTCGGGTGTCCGTGAGCGAGAGCAAGGACAGGCCGTCCTCCTTCG AGAGCGCCACCGCCGCCGCCGCCGTGAGCGTCGAGAGCTACGTGCTCGCG CAGCCGGGCCGGACCCTGCTGCCGGACGATGCGCGCGCCAGCGCCGCGGA TGGACACCACCTCCACGTCGAGCTGTCCCTCAAGGGAGCGGCTGGCGCTG GTGCGGCGGCGGCGGCGGCGCCGCAGCCGCACCAGGTGTTCGTGCGCTTC ACGCACGTGGAGACGGGTCTGGACACGTTTTTCGTCGCGGCTCCCGTTGA GGGCGGCGGCAGCAAGGCGGCGGGAGAGTTCGCCGTGTCCGTGTCGCTGG GGGAGGAGTCGCAGACGTTCCTCCAGAGGTCCGGGGCGTACAGCGTGACC GCGCTGGTCGGGGGGGCGCTCGTGCTTCCGCCTGTTTCGGCGGAGCTCGG CGCGATCGAGCTGTTGTTCCTCGGCGCCAAGGAGCGCAAGTGGCCGATCT ACGCGCGGGCGCTGCTGCACGAGACCGACGTGTCGCTGGGCCCGCTCCCG GAGAAGCACCACACGTTCAGAGAGCCCGAGGTTCGGCCGCACGCCGGGGT GTCTCTCCTGTTCACGGTCCTGGCTCTGGCGCCCCTGGCGGGGCTGGGGT ACGGGATGCGGCGCGGCGGGGCGAACCTGGAGCGGCTATCGTCGGCCGGG ACGGGGAGGGCGTGGTGCGCGGCGTTCCAGGCGTGCATGGTGGGCTTCGT CCTGCTGTTCGCGACCTACTGGGCGGCGCTGACGATGGCATACACGCTGC GGGTGCTGGCGGTGCTGTCGGTGGCGACCGCTCTCACCGGCAGGAAGGCG CTCCAGACGCTCGCGGTTGACGACGCGGCGAGAGCGGACGCTACTGCTGT AGCCGGCCACACCAAAGTAGATTAGCAATTTTTTCGGTGTGTTTCTGGGA ATGATGTATGCTGGCCGGGGAGAGGAGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig62:676451..685029-

>mRNA_P-littoralis_Contig62.168.1 ID=mRNA_P-littoralis_Contig62.168.1|Name=mRNA_P-littoralis_Contig62.168.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2088bp|location=Sequence derived from alignment at P-littoralis_Contig62:676451..685029- (Pylaiella littoralis U1_48)
ATGCGTCTGCTTTTTCGACCGGCGGCGGGAGCCTCCTTCGTACTCTTCAG
CCTCCTCCAACAACCCCGAGCCGCCCTCGCAGCACCCCTGGTCGACCACT
TTTCGCCGGCAGACCGGGAAGCCTACGTGGAAGCCGCCCTGCGCGCTCTG
AGCGACTCTGAGTCGTCTCTGGTCGACAAGGACTACGCAGTGAGGCTCTT
GGCGGCGCTGGACAACGCTTCCGTGGCTTCCGGGTACAAGTCCTCGGCGT
GTTCAGCGGCGGAGGCGGGGCTTGGAAGCGGCGATCTTGCGCAGATCCAC
CACGGGATCAGCCTGGCTCACGGGGTCGGCGGCTGCACGGACACTAAGAC
GTGGAGAGCCAGCGAGGAAGTCGTGGAGGCCATGAAGAGGGACGACCTGC
GGAGCCTCTATCACGCCGTCTTCGCGGCGCCTCTGTTGGGGGCCGACGTG
AGCGATAAGGGCAAGGTGCTCGAGAAAGTTTTGGACTTGCTCGGGTCGGA
TGGGTCGGTCAGGAGCTACCCCGACGGTCCCGTTGGGGCCGAAAACGCCT
TCATGGCGGCCGAGCTGTTGGCAGTGCTGGTGCCCTCTGTTAGGGGGGAC
GCCAAGAAGATCGCGCTCAGCAAGGTGGAGTTCATGAAGGACAGGGTGCT
GAGGCACGAGCCAGCCCTGCTGGTGCAGCTGAATCGCGCCGCGGGCGACA
AGTTGGCCGTCAAGGCGGGCAAGCTTAAGTCTATGGCACGAGACTTGCTG
GAGGCGAGTCGCACGAGTTCCCCCAAGAGCATGTTGGGGGTGTACGAGGC
CCTGAAAGCCATCGAGGAATATCCGAAAGCGCCGCTCCCGATCAAGATCT
TGCCGGCATCGCCTTCTGTGGAGGACCTGGCGAAAGGTGGTGTCTCCCTC
TTGATAACGTCCTTGCTGGGGTCTCCGGCGAAGGTGAAGTCAGTTTCGCT
CTTCTCCCTCCAACGCGAGGACGGGTCGGAAGCCCTGGAGAGCGGCGGCG
GCAGCCCCCTGGGCGCCCCCGACGCCAAGGGGTTCCGCGCAGTGCCGGCC
GTCAAGGTAAGCCCCGGCGTCTACCACGCCGGGTTTTCGGTTGAGGTCAA
GGGCGGGGAGAAGCCCCTGGCGGCTAACCTCGAGATCGCCGTCGGGTCCG
CCGCGGTCCTGGCGGAGGCTCGGGTGTCCGTGAGCGAGAGCAAGGACAGG
CCGTCCTCCTTCGAGAGCGCCACCGCCGCCGCCGCCGTGAGCGTCGAGAG
CTACGTGCTCGCGCAGCCGGGCCGGACCCTGCTGCCGGACGATGCGCGCG
CCAGCGCCGCGGATGGACACCACCTCCACGTCGAGCTGTCCCTCAAGGGA
GCGGCTGGCGCTGGTGCGGCGGCGGCGGCGGCGCCGCAGCCGCACCAGGT
GTTCGTGCGCTTCACGCACGTGGAGACGGGTCTGGACACGTTTTTCGTCG
CGGCTCCCGTTGAGGGCGGCGGCAGCAAGGCGGCGGGAGAGTTCGCCGTG
TCCGTGTCGCTGGGGGAGGAGTCGCAGACGTTCCTCCAGAGGTCCGGGGC
GTACAGCGTGACCGCGCTGGTCGGGGGGGCGCTCGTGCTTCCGCCTGTTT
CGGCGGAGCTCGGCGCGATCGAGCTGTTGTTCCTCGGCGCCAAGGAGCGC
AAGTGGCCGATCTACGCGCGGGCGCTGCTGCACGAGACCGACGTGTCGCT
GGGCCCGCTCCCGGAGAAGCACCACACGTTCAGAGAGCCCGAGGTTCGGC
CGCACGCCGGGGTGTCTCTCCTGTTCACGGTCCTGGCTCTGGCGCCCCTG
GCGGGGCTGGGGTACGGGATGCGGCGCGGCGGGGCGAACCTGGAGCGGCT
ATCGTCGGCCGGGACGGGGAGGGCGTGGTGCGCGGCGTTCCAGGCGTGCA
TGGTGGGCTTCGTCCTGCTGTTCGCGACCTACTGGGCGGCGCTGACGATG
GCATACACGCTGCGGGTGCTGGCGGTGCTGTCGGTGGCGACCGCTCTCAC
CGGCAGGAAGGCGCTCCAGACGCTCGCGGTTGACGACGCGGCGAGAGCGG
ACGCTACTGCTGTAGCCGGCCACACCAAAGTAGATTAG
back to top