mRNA_P-littoralis_Contig62.157.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.157.1
Unique NamemRNA_P-littoralis_Contig62.157.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:664509..665104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.3809412-UTR-P-littoralis_Contig62:664508..6645121680791295.3809412-UTR-P-littoralis_Contig62:664508..664512Pylaiella littoralis U1_48UTRP-littoralis_Contig62 664509..664512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.3927906-CDS-P-littoralis_Contig62:664512..6645901680791295.3927906-CDS-P-littoralis_Contig62:664512..664590Pylaiella littoralis U1_48CDSP-littoralis_Contig62 664513..664590 +
1680791295.4024374-CDS-P-littoralis_Contig62:665026..6651041680791295.4024374-CDS-P-littoralis_Contig62:665026..665104Pylaiella littoralis U1_48CDSP-littoralis_Contig62 665027..665104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.157.1prot_P-littoralis_Contig62.157.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 664513..665104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.157.1

>prot_P-littoralis_Contig62.157.1 ID=prot_P-littoralis_Contig62.157.1|Name=mRNA_P-littoralis_Contig62.157.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TV
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mRNA from alignment at P-littoralis_Contig62:664509..665104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.157.1 ID=mRNA_P-littoralis_Contig62.157.1|Name=mRNA_P-littoralis_Contig62.157.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=596bp|location=Sequence derived from alignment at P-littoralis_Contig62:664509..665104+ (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTC
GGCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCA
CACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAACA
ACAATGGAGGGAGCGGATAGAGCGCTGCTGTGTCGGCGTGCATGTATTCG
ATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTCTG
TCGCGAGTGTTGAAAGAAAAACAACTGCACTCCCACATTCTTCACCTCTG
CTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGG
AGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:664509..665104+

>mRNA_P-littoralis_Contig62.157.1 ID=mRNA_P-littoralis_Contig62.157.1|Name=mRNA_P-littoralis_Contig62.157.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig62:664509..665104+ (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTC
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