mRNA_P-littoralis_Contig618.38.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig618.38.3
Unique NamemRNA_P-littoralis_Contig618.38.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig618.38.3 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.270e-9
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:    3 VSLVDGMSMNQLREMYKTVFGPRGSSGYERVEDLRALFKELHQQGDCSKLFLGGRGGVS 179
            ++LVD M    L++++K VFG   +SG  R ED    F+ L   GDCSK FLGGRGGV+
Sbjct:  603 INLVDEMPAEDLKKLHKVVFGTLSASGLSRKEDYITKFRPLFHDGDCSKQFLGGRGGVA 661
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BLAST of mRNA_P-littoralis_Contig618.38.3 vs. uniprot
Match: A0A6H5JLJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.200e-9
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:    3 VSLVDGMSMNQLREMYKTVFGPRGSSGYERVEDLRALFKELHQQGDCSKLFLGGRGGVS 179
            ++LV  M    L++++K VFG   +SG  R ED  A F+ L   GDCSK FLGGRGGV+
Sbjct:   81 INLVHEMPAEDLKKLHKVVFGTLSASGLSRKEDYIAKFRALFHDGDCSKQFLGGRGGVA 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.38.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE1.270e-949.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLJ6_9PHAE3.200e-949.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig618contigP-littoralis_Contig618:169151..169648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size179
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791286.9175644-UTR-P-littoralis_Contig618:169150..1691701680791286.9175644-UTR-P-littoralis_Contig618:169150..169170Pylaiella littoralis U1_48UTRP-littoralis_Contig618 169151..169170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791286.9318938-CDS-P-littoralis_Contig618:169170..1692321680791286.9318938-CDS-P-littoralis_Contig618:169170..169232Pylaiella littoralis U1_48CDSP-littoralis_Contig618 169171..169232 +
1680791286.9445024-CDS-P-littoralis_Contig618:169551..1696481680791286.9445024-CDS-P-littoralis_Contig618:169551..169648Pylaiella littoralis U1_48CDSP-littoralis_Contig618 169552..169648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig618.38.3prot_P-littoralis_Contig618.38.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig618 169171..169648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig618.38.3

>prot_P-littoralis_Contig618.38.3 ID=prot_P-littoralis_Contig618.38.3|Name=mRNA_P-littoralis_Contig618.38.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MSMNQLREMYKTVFGPRGSSGYERVEDLRALFKELHQQGDCSKLFLGGRG
GVS
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mRNA from alignment at P-littoralis_Contig618:169151..169648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig618.38.3 ID=mRNA_P-littoralis_Contig618.38.3|Name=mRNA_P-littoralis_Contig618.38.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig618:169151..169648+ (Pylaiella littoralis U1_48)
GGGTGAGCCTGGTCGATGGTATGTCGATGAACCAGCTCAGAGAGATGTAC
AAGACCGTGTTCGGCCCGAGAGGAAGCAGCGGGTGACCTGGTGTTCGTAC
GAAAAGTCGTTGGTGCCCATGTTGCGCTTGCTGCCACACAGCCAGAAATA
CCGGTAGTGGTCATGTAGCCCGTGCAGCTATCGTACGATAGGTAACGTTG
TATTCAGTAACAACACCTCTGGGTTTTTGCCAGGCCTATCGTGGCACTAT
TCTCGATGTCAACCGGCCTCATCGTAGTTGTTTCAATcCCCCAAGCCTTG
TATAGAGGGGTTGCACTAGGTGCCTTTCGATGTGCCCCTTTCGATGTCCA
CGACTGAGAAAGGTCTGTGCCGTGACGCCCATGTGTACATGATGTACGCA
GGTATGAAAGAGTGGAGGACCTCAGAGCCCTCTTCAAGGAACTGCACCAA
CAAGGTGACTGCTCGAAGCTTTTTCTTGGTGGCCGAGGAGGGGTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig618:169151..169648+

>mRNA_P-littoralis_Contig618.38.3 ID=mRNA_P-littoralis_Contig618.38.3|Name=mRNA_P-littoralis_Contig618.38.3|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig618:169151..169648+ (Pylaiella littoralis U1_48)
ATGTCGATGAACCAGCTCAGAGAGATGTACAAGACCGTGTTCGGCCCGAG
AGGAAGCAGCGGGTATGAAAGAGTGGAGGACCTCAGAGCCCTCTTCAAGG
AACTGCACCAACAAGGTGACTGCTCGAAGCTTTTTCTTGGTGGCCGAGGA
GGGGTGTCG
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