mRNA_P-littoralis_Contig614.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig614.16.1
Unique NamemRNA_P-littoralis_Contig614.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig614.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig614contigP-littoralis_Contig614:66218..70772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1423
Hectar predicted targeting categoryother localisation
Exons12
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig614.16.1prot_P-littoralis_Contig614.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig614 66218..68925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.3737917-CDS-P-littoralis_Contig614:66217..662891680791279.3737917-CDS-P-littoralis_Contig614:66217..66289Pylaiella littoralis U1_48CDSP-littoralis_Contig614 66218..66289 -
1680791279.3839693-CDS-P-littoralis_Contig614:66572..666951680791279.3839693-CDS-P-littoralis_Contig614:66572..66695Pylaiella littoralis U1_48CDSP-littoralis_Contig614 66573..66695 -
1680791279.393238-CDS-P-littoralis_Contig614:67014..671401680791279.393238-CDS-P-littoralis_Contig614:67014..67140Pylaiella littoralis U1_48CDSP-littoralis_Contig614 67015..67140 -
1680791279.404049-CDS-P-littoralis_Contig614:67374..674911680791279.404049-CDS-P-littoralis_Contig614:67374..67491Pylaiella littoralis U1_48CDSP-littoralis_Contig614 67375..67491 -
1680791279.4153595-CDS-P-littoralis_Contig614:68041..681611680791279.4153595-CDS-P-littoralis_Contig614:68041..68161Pylaiella littoralis U1_48CDSP-littoralis_Contig614 68042..68161 -
1680791279.4281096-CDS-P-littoralis_Contig614:68345..684711680791279.4281096-CDS-P-littoralis_Contig614:68345..68471Pylaiella littoralis U1_48CDSP-littoralis_Contig614 68346..68471 -
1680791279.4394407-CDS-P-littoralis_Contig614:68596..687221680791279.4394407-CDS-P-littoralis_Contig614:68596..68722Pylaiella littoralis U1_48CDSP-littoralis_Contig614 68597..68722 -
1680791279.4506798-CDS-P-littoralis_Contig614:68844..689251680791279.4506798-CDS-P-littoralis_Contig614:68844..68925Pylaiella littoralis U1_48CDSP-littoralis_Contig614 68845..68925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791279.4659271-UTR-P-littoralis_Contig614:68925..689701680791279.4659271-UTR-P-littoralis_Contig614:68925..68970Pylaiella littoralis U1_48UTRP-littoralis_Contig614 68926..68970 -
1680791279.482434-UTR-P-littoralis_Contig614:69062..690831680791279.482434-UTR-P-littoralis_Contig614:69062..69083Pylaiella littoralis U1_48UTRP-littoralis_Contig614 69063..69083 -
1680791279.4955907-UTR-P-littoralis_Contig614:69815..700281680791279.4955907-UTR-P-littoralis_Contig614:69815..70028Pylaiella littoralis U1_48UTRP-littoralis_Contig614 69816..70028 -
1680791279.5101786-UTR-P-littoralis_Contig614:70138..702641680791279.5101786-UTR-P-littoralis_Contig614:70138..70264Pylaiella littoralis U1_48UTRP-littoralis_Contig614 70139..70264 -
1680791279.5223296-UTR-P-littoralis_Contig614:70647..707721680791279.5223296-UTR-P-littoralis_Contig614:70647..70772Pylaiella littoralis U1_48UTRP-littoralis_Contig614 70648..70772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig614.16.1

>prot_P-littoralis_Contig614.16.1 ID=prot_P-littoralis_Contig614.16.1|Name=mRNA_P-littoralis_Contig614.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=297bp
MRRKKLPPGHSDTSQSLHNLAVVRKKQGKFQEAERLHEGASLLQQEALDA
EHPDLITSLSNRASLMKEQGKFKEAELLYEKLQKAQEKYLGPDHEDVAAT
LNIRAFVLLKQGKYTEAEALNGRADTISAGGNGPTGNTANLNNRAFLLSQ
QGNYNEAEPLFKRVLEIHENTNDPRIITDLHNLALVWKKQGKYEDAGPLY
ERATMLSEAVHGNCSSDLATSLKHQAVSLHELGKHNEAIPLLKRGLAICV
QIGGDHHPSTLDIKEWVERAHDQRNAAWKFADMGFPADQATTALRAS
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mRNA from alignment at P-littoralis_Contig614:66218..70772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig614.16.1 ID=mRNA_P-littoralis_Contig614.16.1|Name=mRNA_P-littoralis_Contig614.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4555bp|location=Sequence derived from alignment at P-littoralis_Contig614:66218..70772- (Pylaiella littoralis U1_48)
AGAGAGTACGCGATGTCGAGGGTAAGGCCTGCTGTCTCCAAGATCAAATT
AGCACAGAATGGAGACAGCAACAGATCAGCGAAGCTGTAGCCAGGAGCAA
CCTCAGCGTTCTTTTGAGACTTATGGTGAGGTGGAAAGTGTGTGTGCTAT
CCCGCTCAAAACTGCGAGAGCAAGCCGCGGAGATTTTGAAAGCAGGTTTT
TCCCGTACTTCGAGCTACCTGGGTAGGAAGCTACAAAGACACGTTTTCAC
GCTCAAATTATTGTGCGGTTTTTTTCCCGGCTGGAAGACTCCCAGAAGCT
TTTTACTTAACCCGGACTTTTATAACGCGGGCCTCCGCCTCATGTCTAAC
TCGCGGCTGACGTGTTTCATATTGTTCAAGACCTCGTACGTCGCTAATCC
TGACGTGTCGCCCAAGAGGCAAGCGGTATGTCCGCTTGCATTGTGTGGCC
AGACTTCCCTCGATTACAGTCTTTCTATTTGGGTGTCATCCCACTGCATC
TTTCGCAGGGCGAGTATAATGAAGCCGAGTCAGAATGTGCAAGGGCACAA
GCCGCCCAAGCGAAAGCCCGGGGACAAGAGCATCTCGAAGTAGCCAGCCT
GCTTTGCAACCGAGCGAGCTTGTTGCAGGACCAGGTGAGAGCGCGAGACA
ATTCCTGATAATTATCAGGGTCCACATTTGTTGGTTGTTCATTTCATTTC
ATTTTGTGGACCGCCCTCACAAAATTCCACTTCTTTCTCTGCAGGGCAAG
TACGCGAAGGCAGCGCTTCTGTTGGAGTGGGCGACGGAGATATGGGAGAA
GGCTCTCGGTCCAGACCATCCGAATATGGCCTCTTCGCTTCACGACCGCG
CGAGCTTGTTGTTACTCCAGGTGGGAAATATCGTTTCACTTTTTCCGCGG
TCATAACTTGTGGTCATTTTCTTTTTTTCGCCCACAACGCCCCCCTCGTG
CCTTTCACAGGAAAAATACAGCGAAGCCGAGCCGCTCCTCAAAATTGTAA
TGGACAAGAGACTCAAGACCTTTGGTGGGGATCATCCAGGATTATCGGAG
ACACGCAACAACCTGGCATTGGTATACGTTCGACAGGTGCTCCGAAGGAT
CTATTTTGTTGAGACAGTTTGGTTGAGAAAGGAACGCCTTTTTTGTGTCA
GACCCGTGCCGTCCGGGTAAAGGTAAACCCCCTTTTGCTTGTTTTGTTTA
CAGTACAGACGAGAGCCGCCAATCATGTAAATGATCAGCAATTTGTCTCG
TTGAACCTGACGGGACATTCGGATTTTTTCATCCGCATTGTTTGGCCATC
CCGCGATCAAAGACCTCCGAACAGTAAGGCAGGGTGGCGGGGTTGAATCC
GCCGAATGAGAGAGCGTCACAGTTGTTTGTGGCAGAGCATGTTGTGGACG
CTTCCCCCTCTCTTTCACCCACCTTTGTGCCAATTAGTTCCATCGAGGCA
GAAGATCTCTGAAGGACTCGGGTTTTCTGACGAGACGCAAGACACCGCAG
CAGGGCGAGGTGTCGACTCTCTTTAAGATTTGGCCGATTCATCAATTCAA
AATTGCCTGTTGTCCACATGTGTTTCGCGCGCAGGGAAAGCTCGACGACG
CCGAGCCACTGCTCAACCAAGCACAAGCGATCAACGCGAAGTTGTACTGC
GCTGGCCACCCGAAGATCGCTTCCGACCACTTTAATCGGGCGGGGTTGCT
GCTTTCTCAGGCGAGGCTCATTTCAGACGTATCTTCTAGTAACTTGTGAG
GTGCAAGCTCAAAGCGCCATTCCGCTAATGAAATCTGTCTCTCGCTGCAC
AGGGCAACTACAATGAAGCCGCGCGACTCTACGAGATTTCGCTGGATATG
CGAAGGAAGAAGCTGCCCCCGGGACACTCGGATACTTCCCAGTCGCTCCA
CAACCTCGCGGTGGTGCGGAAAAAGCAGGTGACCTTCTGATCTTACTGGA
TTAAATAACTGCAAGCAGTCAAACCTTTTCGAGGATTTAACCGTTTCAAG
TTTGATTTGTCCCGATTGCTCGATTCGCCCCCAACTGCTGTTGCTCACAG
GGCAAGTTTCAGGAAGCCGAGCGACTGCACGAGGGGGCATCTCTCTTACA
ACAAGAGGCCCTTGATGCGGAGCATCCGGATTTGATCACTTCTCTCTCAA
ACCGAGCCAGCCTGATGAAGGAGCAGGTGACCGTCTGTCAGATTCGTTAG
AGAATTTTCCAATCTCTTGGCATTGCTGTTGTTGTCCCCTTGTGCGACCG
AAAGGTTGAATGTTTGTGCCGCTCGCGTTTGTGCACCTTACTTACACGAA
GGGCAAATTCAAGGAAGCAGAGCTGCTCTACGAGAAGCTACAGAAAGCCC
AAGAGAAGTACCTTGGTCCGGATCATGAAGATGTGGCAGCGACACTCAAC
ATTCGGGCTTTTGTGTTGCTGAAGCAGGTGAGGCACTGAAGTGGTTGGTT
GGTGATAACCCTCGATTGCCTCTTTTTCGTATGCCTGTCAGGTAGCGTCA
ACTGTTCAGGATATAGTCGCTCACATGGCCTTGTCTATACGCTCTCTTTC
AAGAACGTCTGCTTCCGATCTCAATTTTCATTTTTTCATCTGCGCTTGAT
GTTATCCGCAGGGGAAGTACACGGAAGCCGAGGCTCTAAACGGCCGTGCC
GACACCATATCGGCAGGAGGAAACGGTCCCACCGGCAATACCGCCAACCT
CAACAATAGGGCATTTCTGCTGTCACAGCAGGTTAGAAACGCAGATTATA
GAGCCACGGGATCTGAGAAACTCGCAAATATGTACCAATATTGTTCCGTC
CGTTCGTTTCGGGGGATTCTGGTTTCGCACAGTACAGCCATTGTAAAACA
CGCTGACATCGGCAGTTCATGAAAAACATCCTATTTTGGGCAGGACAGGA
ATATACTGTCGGTTGCCGGCAGGTTTTCCAAAAGCCGCACACAAGCAATT
GAACTTTATATGTAAGGGCTGGGTAGGCGTTGTCGCGCGCCATTCGTCGT
ACGGTAAGCATTCGACTGTGCGGGAGACATGCATGATTCTGGTCAACTTA
TGGAGTAATTGAGAGTGAAGGTGATGTAAATCAGGATATAGTGGCGGATT
GTGGGTGTTGTTGGGTTACATCTCAGCATTTTCGTTTGGAATCCCATAGT
AGCAGCGTACTAGCAAGGTCGATGTGAGCGTTGTATCACAGAAAGGAACA
GGAGGCCTGTAATTCTGATAGTCCACTTTTTCCGCACCGCAAATTCACTT
GGTTCGCTATATTTCACCCTCGTGCGCACAGGGGAACTACAACGAGGCCG
AGCCATTGTTCAAGCGCGTATTGGAGATCCACGAGAACACTAACGACCCA
AGGATTATTACGGACCTCCATAACTTGGCTTTGGTGTGGAAGAAGCAGGT
GGGATATTTTCGGAATTTGTCTGCTTCGTGGTTGCACCTCGGATTTCTTT
TCTCATAGACAGCTGCGCACCTCGCTAGACAACGGCAGCTTTTGACGGCA
GCTTTTGGGCAGTTGTACCCGAGGTCGAATGCCACTCGAGAAGGGCCGTG
CGCGGTTTTATCGTGCACCACGTCGTGCTGAGCCTTCGGACGAAGACACT
CTACATGCATCGATTTCATTGATTCTGCGCAGGGCAAGTACGAGGACGCC
GGGCCCCTCTACGAGCGTGCCACCATGCTTTCGGAGGCGGTTCATGGAAA
TTGTTCCTCCGACCTTGCGACGAGTCTCAAGCATCAAGCGGTATCGTTGC
ATGAACTGGTGCGGCACAGCATGACGTTTGTCTCAAAGTTGTGCAAGATA
GGAAATAGATGCTCGGTTCTTCCTTGCTCCAAATGTCAGTGTTTTGGTAT
CAGCCAAGGGTGGAAACGTAGTATTTGATTTTTTTCAGTTTTGGCTAGGT
CGAAAATGCGGTGCCAGCGTCCAAAACTTGGCTTCCGTTTTGTTGAGACG
CAGATACAGGGGGTAAAAATTCCATCACGTGTTACAGTACAAGTTTCCCT
GACGTGAGAATATGCTTCCTTTTCCCGCATCTGCCGCCGGGCTGAACTTC
GCAACTTCGCATGTGAAACTTCCCTAGGGTAAGCACAATGAGGCGATTCC
GCTGTTGAAAAGGGGGTTGGCCATCTGCGTCCAGATAGGCGGCGACCACC
ATCCATCTACACTCGACATCAAGGAGTGGGTTGAGCGTGCACATGACCAG
GTTTGGGGAAAGAAGCCTATTGCATGGTTGTTGGGTACGCCCATCGTTGT
TGCGAAGCTTTACCACGAAGAGTAAACGAGATACGAAGATATTGTGTTTG
GCTCCCTAGTGTTGGCCGCAACACCAGCTGTGAACACGATTGTTTTGCTC
AGATCTGTACCAACCCGCTGTGATGCACGGAAGTTCGAATTTTGTAGGTC
CACAGGAGTTCCGTTTATCACGAATCCGCCCTTTACCTCATATGCTTGTG
CGTTCTGTGTTCGGCGCGAAAATCCAATGTCAGCGGAATGCTGCTTGGAA
GTTCGCCGACATGGGGTTCCCCGCAGACCAGGCCACGACTGCGCTGCGTG
CTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig614:66218..70772-

>mRNA_P-littoralis_Contig614.16.1 ID=mRNA_P-littoralis_Contig614.16.1|Name=mRNA_P-littoralis_Contig614.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=891bp|location=Sequence derived from alignment at P-littoralis_Contig614:66218..70772- (Pylaiella littoralis U1_48)
ATGCGAAGGAAGAAGCTGCCCCCGGGACACTCGGATACTTCCCAGTCGCT
CCACAACCTCGCGGTGGTGCGGAAAAAGCAGGGCAAGTTTCAGGAAGCCG
AGCGACTGCACGAGGGGGCATCTCTCTTACAACAAGAGGCCCTTGATGCG
GAGCATCCGGATTTGATCACTTCTCTCTCAAACCGAGCCAGCCTGATGAA
GGAGCAGGGCAAATTCAAGGAAGCAGAGCTGCTCTACGAGAAGCTACAGA
AAGCCCAAGAGAAGTACCTTGGTCCGGATCATGAAGATGTGGCAGCGACA
CTCAACATTCGGGCTTTTGTGTTGCTGAAGCAGGGGAAGTACACGGAAGC
CGAGGCTCTAAACGGCCGTGCCGACACCATATCGGCAGGAGGAAACGGTC
CCACCGGCAATACCGCCAACCTCAACAATAGGGCATTTCTGCTGTCACAG
CAGGGGAACTACAACGAGGCCGAGCCATTGTTCAAGCGCGTATTGGAGAT
CCACGAGAACACTAACGACCCAAGGATTATTACGGACCTCCATAACTTGG
CTTTGGTGTGGAAGAAGCAGGGCAAGTACGAGGACGCCGGGCCCCTCTAC
GAGCGTGCCACCATGCTTTCGGAGGCGGTTCATGGAAATTGTTCCTCCGA
CCTTGCGACGAGTCTCAAGCATCAAGCGGTATCGTTGCATGAACTGGGTA
AGCACAATGAGGCGATTCCGCTGTTGAAAAGGGGGTTGGCCATCTGCGTC
CAGATAGGCGGCGACCACCATCCATCTACACTCGACATCAAGGAGTGGGT
TGAGCGTGCACATGACCAGCGGAATGCTGCTTGGAAGTTCGCCGACATGG
GGTTCCCCGCAGACCAGGCCACGACTGCGCTGCGTGCTTCA
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