mRNA_P-littoralis_Contig610.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig610.6.1
Unique NamemRNA_P-littoralis_Contig610.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A6H5JAG7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG7_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 1.760e-127
Identity = 167/180 (92.78%), Postives = 172/180 (95.56%), Query Frame = 1
Query:    4 MPVRKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            MPVRKR PKEYSFRTASWSCPLTC+QCQEVRANG+RCKNRVCFGTPLCHVHNSLKYGVK K STIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAY E+LPGPEQL IDSACKRGVASL+NGLFNANGSVS  SRHNC+ RYRPVGDGVPGVWLKSTKPLKIGDEIF
Sbjct:    1 MPVRKRAPKEYSFRTASWSCPLTCEQCQEVRANGMRCKNRVCFGTPLCHVHNSLKYGVKAKTSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEILPGPEQLHIDSACKRGVASLANGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIF 180          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A6H5JFB7_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB7_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 3.570e-90
Identity = 120/180 (66.67%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    4 MPVRKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            MPVR+R P E SFRTA WSCPL C QC   RANG RC+NRVCFG+P+C +HN +KYGV++K+STI  AGKGLFAT   PK+SWICPY GE T+ +CI +RYPG MTAAYTE +PGP  L  D AC RGV SL+N  FNA+G VS  SR NC+ RYRPVGDGVPGVWLK+T+ ++ GDEIF
Sbjct:    1 MPVRRRSPTELSFRTADWSCPLKCGQCTHTRANGTRCRNRVCFGSPVCWLHNCIKYGVEIKDSTIPGAGKGLFATTRLPKDSWICPYSGEPTTMNCIHQRYPGAMTAAYTEKIPGPANLAFDCACSRGVGSLANARFNADGKVSALSRQNCLSRYRPVGDGVPGVWLKTTRVVEDGDEIF 180          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: Q8QNC4_ESV1K (EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K)

HSP 1 Score: 258 bits (660), Expect = 9.950e-85
Identity = 117/180 (65.00%), Postives = 137/180 (76.11%), Query Frame = 1
Query:    4 MPVRKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            MP RKR P E SFRTA+WSCPLTC QC   R +G+RCKNRVCFG+P+C VHN+ KYGVK+K+STI  AGKGLFATR  P++SWICPY GE T+ +CI +RYP   TAAYTE +     L  D AC RG+ SL+N  FN+NG+VS   RHNC  RYRPVGDGVPGVWLKSTK ++ G EIF
Sbjct:    1 MPPRKRAPTELSFRTANWSCPLTCGQCTHTRDDGLRCKNRVCFGSPVCWVHNARKYGVKIKDSTIPGAGKGLFATRKIPRDSWICPYSGEATTMNCIHQRYPEGETAAYTEQVQA--NLAYDCACSRGIGSLANAQFNSNGTVSALRRHNCFSRYRPVGDGVPGVWLKSTKVIEEGQEIF 178          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: B5LWM5_9PHYC (Putative lysine methyltransferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM5_9PHYC)

HSP 1 Score: 251 bits (642), Expect = 5.610e-82
Identity = 110/177 (62.15%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   13 RKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            R+R P E  F T +WSCPL C++C   R NG+RCKNRVCFG PLC +HNS K+GVK+K STI  AGKGLFATR  PKN+WICPY GE+T+ +CI +RYPGD TA Y E +   + +  D AC RG+ SL+NG FNANG VS   RHNC+ RYRPVG+GVPGVWLKSTK +K G+E+ 
Sbjct:    5 RRRAPTELRFETDNWSCPLKCNKCTFTRPNGLRCKNRVCFGFPLCWIHNSQKFGVKIKQSTIPGAGKGLFATRQIPKNTWICPYSGEETTMECIHQRYPGDSTAPYAEKIS--DNIAYDCACSRGIGSLANGRFNANGKVSSVRRHNCISRYRPVGEGVPGVWLKSTKDIKSGEELM 179          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A6H5J8Q0_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q0_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.330e-76
Identity = 111/130 (85.38%), Postives = 117/130 (90.00%), Query Frame = 1
Query:  154 HNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            H + KY     ++ +VNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAY E+LPGPEQL IDSACKRGVASLSNGLFNANGSVS  SRHNC+ RYRPVGDGVPGVWLKSTKPLKIGDEIF
Sbjct:   17 HLTCKY-----STVLVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYAEMLPGPEQLHIDSACKRGVASLSNGLFNANGSVSSLSRHNCVSRYRPVGDGVPGVWLKSTKPLKIGDEIF 141          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: Q6XLV1_9PHYC (FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV1_9PHYC)

HSP 1 Score: 221 bits (564), Expect = 8.030e-70
Identity = 107/189 (56.61%), Postives = 123/189 (65.08%), Query Frame = 1
Query:    1 KMPVRKRVPKEYSF------RTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLR--IDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            +MP RK  P+E SF        ++WSCPL C +C  VR NG +CK RVC G P C +H    +GV VK STI NAGKGLFATR F KN+WICPY GE    +C  +RYPG  TA Y E+LP     R  +DSAC R V SL+NG F  +GSVS    HNC  RYRPVGDG  GVWLKSTK +K GDEIF
Sbjct:    6 RMPKRKHKPREMSFVFEKDEDDSTWSCPLLCQRCAYVRPNGEQCKKRVCVGHPFCWIHVRAAFGVTVKTSTIPNAGKGLFATRDFKKNTWICPYFGEIIDANCFVQRYPGKATAPYAEMLPLNTTPRKYVDSACTRSVGSLANGKFKGDGSVSSLRHHNCFTRYRPVGDGFKGVWLKSTKTIKAGDEIF 194          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A6H5K4T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.210e-65
Identity = 103/179 (57.54%), Postives = 125/179 (69.83%), Query Frame = 1
Query:    4 MPVRKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEI 540
            MP R +    + F+TA WS PL   +CQ     G RCK RV FG PL  VHN LKY V++K STI  AG+GLFATR+ PK SW+CPY+GE+T+  CI KRYPG MTA YT  LPG   L +DSA  RG+ SL++G FNA+G+VS   RHNC+ R RPVGDG+PG WLK+TK  + GDEI
Sbjct:    1 MPSRTKT--SWYFQTADWSLPLVSGRCQHETRKGTRCKKRVSFGYPLRSVHNKLKYEVQIKPSTIPGAGEGLFATRSIPKGSWLCPYVGEETTMSCIHKRYPGTMTAPYTMQLPGG--LAVDSALVRGIGSLASGKFNADGTVSSLDRHNCVARVRPVGDGIPGPWLKTTKHRRPGDEI 175          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A6H5J8I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.230e-41
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 1
Query:  316 MTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIF 543
            MTA+Y E+LPGPEQL IDSAC RGVASLSNGLFNANGSVS  SRHNC+ RYRPVGDGVPG WLKSTKP+KIGDEIF
Sbjct:    1 MTASYAEMLPGPEQLHIDSACNRGVASLSNGLFNANGSVSSLSRHNCVSRYRPVGDGVPGAWLKSTKPIKIGDEIF 76          
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Match: A0A519SW34_FLASP (SET domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519SW34_FLASP)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-6
Identity = 51/170 (30.00%), Postives = 74/170 (43.53%), Query Frame = 1
Query:  130 FGTPLCHVHNSLKYGVKVKNSTIVNAGKGLFATRAFPKNS---------WICPYLGEKTSKDCIQKRYPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHNCMPRYRPVGDGVPGVWLKSTKPLKIGDEIFIG-------TETEVTCCNTTIRQ 591
             G+  C  H +  + +K+K STI NAG GLFA      NS          I  Y+GE  ++  +++RY G+ TA Y   +   +    D A  R +A+   G  NA  S+           YR          LK+TK ++ GDEIF+         E +V    TT R+
Sbjct:    2 IGSAFCSAHLAFNHHLKIKASTIPNAGLGLFAIDPLNSNSNEVLFRKGVTIVKYMGESINEAELKRRY-GNHTAPYGVQIS--QDRYEDGARIRSLANTKPGYNNAILSI-----------YRGHAS------LKATKKIRNGDEIFVSYGRAYKMNEPDVAYITTTQRR 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig610.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JAG7_9PHAE1.760e-12792.78SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFB7_9PHAE3.570e-9066.67SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q8QNC4_ESV1K9.950e-8565.00EsV-1-158 n=2 Tax=root TaxID=1 RepID=Q8QNC4_ESV1K[more]
B5LWM5_9PHYC5.610e-8262.15Putative lysine methyltransferase n=1 Tax=Feldmann... [more]
A0A6H5J8Q0_9PHAE1.330e-7685.38SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XLV1_9PHYC8.030e-7056.61FirrV-1-G2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5K4T1_9PHAE1.210e-6557.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8I0_9PHAE6.230e-4185.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A519SW34_FLASP2.060e-630.00SET domain-containing protein n=1 Tax=Flavobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig610contigP-littoralis_Contig610:5408..6046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog269798.CHU_1535
PFAMsSET
Model size639
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-06
EggNOG OGsCOG2940@1|root,COG2940@2|Bacteria,4PB6A@976|Bacteroidetes,47VAS@768503|Cytophagia
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
Cds size636
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.1428003-CDS-P-littoralis_Contig610:5407..60431680791273.1428003-CDS-P-littoralis_Contig610:5407..6043Pylaiella littoralis U1_48CDSP-littoralis_Contig610 5408..6043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.15655-UTR-P-littoralis_Contig610:6043..60461680791273.15655-UTR-P-littoralis_Contig610:6043..6046Pylaiella littoralis U1_48UTRP-littoralis_Contig610 6044..6046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig610.6.1prot_P-littoralis_Contig610.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig610 5408..6043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig610.6.1

>prot_P-littoralis_Contig610.6.1 ID=prot_P-littoralis_Contig610.6.1|Name=mRNA_P-littoralis_Contig610.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=212bp
MPVRKRVPKEYSFRTASWSCPLTCDQCQEVRANGIRCKNRVCFGTPLCHV
HNSLKYGVKVKNSTIVNAGKGLFATRAFPKNSWICPYLGEKTSKDCIQKR
YPGDMTAAYTEVLPGPEQLRIDSACKRGVASLSNGLFNANGSVSPFSRHN
CMPRYRPVGDGVPGVWLKSTKPLKIGDEIFIGTETEVTCCNTTIRQSDEP
RHPTRDFIEPT*
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mRNA from alignment at P-littoralis_Contig610:5408..6046-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig610.6.1 ID=mRNA_P-littoralis_Contig610.6.1|Name=mRNA_P-littoralis_Contig610.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig610:5408..6046- (Pylaiella littoralis U1_48)
AAGATGCCTGTGCGTAAACGTGTGCCGAAGGAATATTCTTTTCGAACTGC GAGTTGGTCGTGCCCCCTCACTTGTGACCAATGCCAAGAGGTGAGGGCGA ACGGCATAAGGTGCAAAAACAGGGTTTGTTTTGGCACCCCCCTCTGCCAC GTGCACAACTCGTTGAAGTATGGAGTGAAAGTAAAAAACTCGACCATCGT CAACGCGGGGAAAGGTTTGTTTGCAACTCGAGCATTCCCAAAAAATTCGT GGATTTGTCCGTACTTGGGTGAGAAAACCTCAAAGGATTGTATTCAAAAA CGCTATCCAGGGGACATGACGGCGGCTTACACTGAGGTACTTCCGGGACC GGAACAACTGCGCATTGACAGTGCGTGCAAGCGGGGCGTCGCTAGTCTTT CGAATGGTCTATTCAATGCGAATGGCAGCGTGTCGCCTTTTAGCCGCCAC AATTGTATGCCGAGATACCGTCCTGTCGGAGATGGAGTACCTGGCGTGTG GCTCAAGTCGACCAAGCCACTTAAAATTGGAGACGAAATTTTTATTGGTA CGGAGACGGAGGTTACATGTTGCAACACAACCATTCGACAAAGCGACGAA CCAAGGCACCCGACACGCGACTTTATTGAGCCCACTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig610:5408..6046-

>mRNA_P-littoralis_Contig610.6.1 ID=mRNA_P-littoralis_Contig610.6.1|Name=mRNA_P-littoralis_Contig610.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=636bp|location=Sequence derived from alignment at P-littoralis_Contig610:5408..6046- (Pylaiella littoralis U1_48)
ATGCCTGTGCGTAAACGTGTGCCGAAGGAATATTCTTTTCGAACTGCGAG
TTGGTCGTGCCCCCTCACTTGTGACCAATGCCAAGAGGTGAGGGCGAACG
GCATAAGGTGCAAAAACAGGGTTTGTTTTGGCACCCCCCTCTGCCACGTG
CACAACTCGTTGAAGTATGGAGTGAAAGTAAAAAACTCGACCATCGTCAA
CGCGGGGAAAGGTTTGTTTGCAACTCGAGCATTCCCAAAAAATTCGTGGA
TTTGTCCGTACTTGGGTGAGAAAACCTCAAAGGATTGTATTCAAAAACGC
TATCCAGGGGACATGACGGCGGCTTACACTGAGGTACTTCCGGGACCGGA
ACAACTGCGCATTGACAGTGCGTGCAAGCGGGGCGTCGCTAGTCTTTCGA
ATGGTCTATTCAATGCGAATGGCAGCGTGTCGCCTTTTAGCCGCCACAAT
TGTATGCCGAGATACCGTCCTGTCGGAGATGGAGTACCTGGCGTGTGGCT
CAAGTCGACCAAGCCACTTAAAATTGGAGACGAAATTTTTATTGGTACGG
AGACGGAGGTTACATGTTGCAACACAACCATTCGACAAAGCGACGAACCA
AGGCACCCGACACGCGACTTTATTGAGCCCACTTAA
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