mRNA_P-littoralis_Contig610.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig610.4.1
Unique NamemRNA_P-littoralis_Contig610.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig610.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig610contigP-littoralis_Contig610:2636..3106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size463
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.081792-UTR-P-littoralis_Contig610:2635..28181680791273.081792-UTR-P-littoralis_Contig610:2635..2818Pylaiella littoralis U1_48UTRP-littoralis_Contig610 2636..2818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.0954466-CDS-P-littoralis_Contig610:2818..28311680791273.0954466-CDS-P-littoralis_Contig610:2818..2831Pylaiella littoralis U1_48CDSP-littoralis_Contig610 2819..2831 -
1680791273.1076083-CDS-P-littoralis_Contig610:2840..31061680791273.1076083-CDS-P-littoralis_Contig610:2840..3106Pylaiella littoralis U1_48CDSP-littoralis_Contig610 2841..3106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig610.4.1prot_P-littoralis_Contig610.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig610 2819..3106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig610.4.1

>prot_P-littoralis_Contig610.4.1 ID=prot_P-littoralis_Contig610.4.1|Name=mRNA_P-littoralis_Contig610.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
ARRHSTPADQLYFRKTVVWRVPQEPKDLAVGWRDDTSVAACQYTELASVA
TRAGRGAPAPSSESTGRCAFHWSLSQPEKKNTHTYSTGPKLL*
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mRNA from alignment at P-littoralis_Contig610:2636..3106-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig610.4.1 ID=mRNA_P-littoralis_Contig610.4.1|Name=mRNA_P-littoralis_Contig610.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig610:2636..3106- (Pylaiella littoralis U1_48)
GCCCGTAGACACAGCACACCCGCCGATCAACTTTATTTTAGAAAAACGGT
GGTCTGGCGTGTGCCACAGGAGCCAAAAGATCTCGCGGTTGGATGGCGTG
ACGACACAAGTGTAGCTGCTTGTCAGTATACAGAGCTGGCGTCTGTAGCG
ACACGGGCTGGGAGAGGAGCCCCAGCTCCCTCGTCAGAATCTACAGGGAG
ATGCGCATTTCACTGGTCTCTGTCACAACCAGAAAAAAAAAACACACACA
CATACAGTACCGGCCCGCTAATAAGAAAGCTCCTTTGAAGAAAGTGAGCC
TGAGATTTTCAAAATAATAAGAAAGTGCCCAGCCTGGGCAATCCCTTGGA
AATACGAAAGTTGGCCCCTTCCTCTGCCAAGGCTAGCCTGAGATGTCATG
CCCACCAATCGTGGCGCATGTGCAGCTCCACATCTCCGCACAACACTGCT
GTAGATTCGGATCCAATAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig610:2636..3106-

>mRNA_P-littoralis_Contig610.4.1 ID=mRNA_P-littoralis_Contig610.4.1|Name=mRNA_P-littoralis_Contig610.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig610:2636..3106- (Pylaiella littoralis U1_48)
GCCCGTAGACACAGCACACCCGCCGATCAACTTTATTTTAGAAAAACGGT
GGTCTGGCGTGTGCCACAGGAGCCAAAAGATCTCGCGGTTGGATGGCGTG
ACGACACAAGTGTAGCTGCTTGTCAGTATACAGAGCTGGCGTCTGTAGCG
ACACGGGCTGGGAGAGGAGCCCCAGCTCCCTCGTCAGAATCTACAGGGAG
ATGCGCATTTCACTGGTCTCTGTCACAACCAGAAAAAAAAAACACACACA
CATACAGTACCGGCCCAAAGCTCCTTTGA
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