mRNA_P-littoralis_Contig610.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig610.13.1
Unique NamemRNA_P-littoralis_Contig610.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Match: A0A6H5J9I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9I8_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 8.350e-70
Identity = 140/324 (43.21%), Postives = 189/324 (58.33%), Query Frame = 1 
Query:  310 DGDESFP----PSIACASEGGIDP------VQELLDLGISGDVARAATQTLRARILNARALERVEDRHEEVRLAIDEFKQTAFGRQSDAWLHGRGWALVPLFSTEAVHDKLSSMTKTVEDNLLYKVSE-GHFELPKNFSAPRINGEHRYMVNPLEKRYRRKLGDDFVKSSEEVGETLAFVLQALDYGYQRSVDVENLILLLSAAGKQVQILHKDQDGAEVSKRLEDTGSGTRGAPEPAPYSAICAFQEGAVLHVIEASHRNLLRDEFDWGDTKELKIPRGWGLLFHSCLVHAGGSYESVNGRLHFYLKMAHGLLSVDGKFKLVE 1248
            DG E  P     ++  A   G+D       +QELLD GI+   A  A Q LR+ +  A  L  VE +H      ID FK T  GR +   L  RG+A+ P+FS+    +    M++ + +    + SE G   +P      +IN + R+MVN  E  +++ LG  F++ +E   +T+ FVLQAL       VD E L LLLSAAG+  Q+LHKDQDG +V KRL  +GSGTRG  EPAPY+ +CAF+E   LHV EASH++ L+DE+DW D  EL IP G+G+LFHSCLVH+G SYE +N RLH Y K  +G  + D  F  V+
Sbjct:  267 DGTEEAPGGVNEAVPAAGVAGVDTRKTKDLMQELLDAGITDADATEAVQQLRSALTAAGELGPVEKQHAAAIDGIDIFKCTQLGRYAYDSLMRRGFAIAPVFSSADRDETTRFMSERIHEEYFTETSEDGRLRVPYAKGLRKINDQERWMVNLEEASHKKSLGQKFMERAEIAVQTMGFVLQAL-VSIDNVVDAEKLTLLLSAAGEANQVLHKDQDGKDVQKRLLGSGSGTRGRSEPAPYTGLCAFREPVYLHVDEASHKDFLKDEYDWNDMVELIIPPGYGILFHSCLVHSGSSYEEINSRLHIYFKCKNGRTTFDNTFHQVK 589
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BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.690e-29
Identity = 96/266 (36.09%), Postives = 142/266 (53.38%), Query Frame = 1 
Query:  478 RHEEVRLAIDEFKQTAFGRQSDAWLHGRGWALVPLFSTEA-VHDKLSSMTKTVEDNLLYKVSEGHFE---LPKNFSAPRINGEHRYMVNPLEKRYRRKLGDDFVKSSEEVGETLAFVLQALDY-GYQRSVDVENLILLLSAAGKQVQILHKDQDGAEVSKRLED-TGSGTRG--APEPAPYSAICAFQEGAVLHVIEASHRNLLRDEFDWGDTKELKIPRGWGLLFHSCLVHAG-GSYESVNGRLHFYLKMAHGLLSVDGKFKLVE 1248
            RH   +  I EF  T +GR +   L   G   VPLF++E     K SSM   V    L + ++G  +   L + ++  RI G+ R M+ PL       LG DF   S ++ +TL +VL ALD  GY R +  E    LLS  G   Q+ H+DQ   +++ ++   T +GTRG   P+P PYSA+CA QEG +L +++ SH ++ ++ ++ G   E +IPRGWGLL+H   VH G G   +   RLH +L+      +  GK  LV+
Sbjct:   13 RHAAEQRCIAEFVGTPYGRLARKKLMRDGKVCVPLFASEQEARTKTSSMASAVAR--LVEDTDGSVKSVMLKRRYT--RIKGQDRLMI-PLS-----DLGTDFGSVSGDMEDTLVYVLWALDNPGYDRIL-AEISTCLLSLEGLLAQVFHRDQVLEKITDQMAGRTQAGTRGNSRPQPPPYSALCAVQEGTILRIVDGSHLDVHKN-YEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 266
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BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.290e-22
Identity = 63/155 (40.65%), Postives = 92/155 (59.35%), Query Frame = 1 
Query:  799 ETLAFVLQALDY-GYQRSVDVENLILLLSAAGKQVQILHKDQDGAEVSKRLED-TGSGTRG--APEPAPYSAICAFQEGAVLHVIEASHRNLLRDEFDWGDTKELKIPRGWGLLFHSCLVHAG-GSYESVNGRLHFYLKMAHGLLSVDGKFKLVE 1248
            ETL +VL ALD  GY R +  E    LLS  G   Q+LH+DQ   +++ ++   T + TRG   P+P PYSA+CAFQEG +L +++ SH ++ ++ ++ G   E +IPRGWGLL+H   VH G G   +   RLH +L+      +  GK  LV+
Sbjct:    3 ETLVYVLWALDNPGYDRIL-AEISTCLLSLEGLLAQVLHRDQVLEKITDQMAGRTQAATRGNSRPQPPPYSALCAFQEGTILRIVDGSHLDVHKN-YEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKIDLVD 155
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BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Match: UPI0000161E52 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52)

HSP 1 Score: 88.6 bits (218), Expect = 2.900e-15
Identity = 61/184 (33.15%), Postives = 85/184 (46.20%), Query Frame = 1 
Query:  700 RINGEHRYMVNPLEKRYRRKLGDDFVKSSEEVGETLAFVLQALDYGYQRSVDVENLILLLSAAGKQVQILHKDQDGAEVSKRLEDTGSGTRGAPEPAPYSAICAFQEGAVLHVIEASHRNLLRDEFDWGDTKELKIPRGWGLLFHSCLVHAG----GSYESVNGRLHFYLKMAHGLLSVDGKFK 1239
            +I G+ RY +  +       +G   V + +E+   LA VL A+  G    V       L +A G  VQ+ H+D    EV  +   +    R  PEP P+SA+ AFQE  VLHV+  SH     ++F         IP G+  +F+S LVH G    G   S N R H YL +A   L   GK +
Sbjct:   24 KIKGQTRYALEAI------YMGGGTVAAFKEIASLLAAVLCAVVDGASVGVVTHKHAALANAMGTGVQMWHRDGRAKEVLAKTHPSHKDKRTRPEPHPFSAVIAFQENTVLHVVRGSHNRGEENDFSQDAPHAHHIPIGYAAVFYSILVHRGMGTDGDRPSENVRGHMYLTVAGCTLPSFGKIE 201
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BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.690e-13
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 1 
Query:  409 ARAATQTLRARILNARALERVEDRHEEVRLAIDEFKQTAFGRQSDAWLHGRGWALVPLFSTEAVHDKLSSMTKTVEDNLLYKVSEGHFELPKNFSAPRINGEHRYMVNPLEKRYRRKLGDDFVKSSEEVGETLAFVLQALDYGYQRSVDVENLILLLSAAGKQVQILHKDQDGAEVSKRLEDTGSGTRGAPEPAPYSAICAFQEGAVLHVIEASHRNLLRDEF 1077
            AR A Q L A +  A A    E++   + +A  +F++TAFG++    LH  G   +P  ++EA    ++ + +    +L+    + H E  K      I G+ RY +  +       +G   V + EE+   LA VL A+  G    V     + L +A G  VQ+ H+D    EV  +   +    R  PEP P+SA+ AF+E  VLHV+  SH     ++F
Sbjct:   94 ARDAVQNLMASLDAAAA----ENQSGAIEVACQDFRETAFGKEVMHDLHVDGIVNIPYGTSEADALSMAGVVRGAAQDLVLG-EKPHRERVK------IKGQTRYALEAI------YMGGGAVAAFEEIASLLAAVLCAVVDGASGGVVTHKHVALANAMGTGVQMWHRDGRAKEVLAKTNPSHKDNRKRPEPHPFSAVIAFEENTVLHVVRGSHNRGKENDF 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig610.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J9I8_9PHAE8.350e-7043.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G604_ECTSI1.690e-2936.09Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G5U5_ECTSI1.290e-2240.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0000161E522.900e-1533.15hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LP46_ECTSI2.690e-1329.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig610contigP-littoralis_Contig610:26220..27773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1250
Hectar predicted targeting categoryother localisation
Exons2
Cds size1248
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.4583535-CDS-P-littoralis_Contig610:26219..273951680791273.4583535-CDS-P-littoralis_Contig610:26219..27395Pylaiella littoralis U1_48CDSP-littoralis_Contig610 26220..27395 -
1680791273.477949-CDS-P-littoralis_Contig610:27701..277731680791273.477949-CDS-P-littoralis_Contig610:27701..27773Pylaiella littoralis U1_48CDSP-littoralis_Contig610 27702..27773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig610.13.1prot_P-littoralis_Contig610.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig610 26220..27773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig610.13.1

>prot_P-littoralis_Contig610.13.1 ID=prot_P-littoralis_Contig610.13.1|Name=mRNA_P-littoralis_Contig610.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=416bp
AQEVDIRVAQLQQQNEMLERRLEVQRLIALDAEARAGEEKPSATAPPPEA
PLVASICVQGPDSYLPFHASAGAPTAESPDGEAAAAVATTAEGMPDDDWL
QLEDGDESFPPSIACASEGGIDPVQELLDLGISGDVARAATQTLRARILN
ARALERVEDRHEEVRLAIDEFKQTAFGRQSDAWLHGRGWALVPLFSTEAV
HDKLSSMTKTVEDNLLYKVSEGHFELPKNFSAPRINGEHRYMVNPLEKRY
RRKLGDDFVKSSEEVGETLAFVLQALDYGYQRSVDVENLILLLSAAGKQV
QILHKDQDGAEVSKRLEDTGSGTRGAPEPAPYSAICAFQEGAVLHVIEAS
HRNLLRDEFDWGDTKELKIPRGWGLLFHSCLVHAGGSYESVNGRLHFYLK
MAHGLLSVDGKFKLVE
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mRNA from alignment at P-littoralis_Contig610:26220..27773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig610.13.1 ID=mRNA_P-littoralis_Contig610.13.1|Name=mRNA_P-littoralis_Contig610.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1554bp|location=Sequence derived from alignment at P-littoralis_Contig610:26220..27773- (Pylaiella littoralis U1_48)
GCGCAGGAAGTGGACATTCGGGTGGCTCAGCTCCAACAACAGAATGAGAT
GCTTGAACGACGACTGGAAGTGGTGAGTTTGGATTGAATGCACGAAGCGT
GTCGCTGAAAGACCACGTAGAACGAAACACCTACACATCACCCACATCTT
GTTGCCTCGTCGGCCGAGGGGTAGGGGCGATTTTTATGCTATGAGGGTAC
GGGAAAGTAGTTCAACTGGAAATAGATGAATCCACGCCCGTCTTCTGTGC
AGCATCCGCATGGTGGCAAAACCTGACAAGTACACGGATATGTTTGTGTG
CCGGAGTGTAGGGTATTCAACTGATCACCCGGCCGACCCGCTCCTCTTTG
TTGCGTGTTTCTTGTGCTGATGGTACAGCAACGGCTGATTGCATTGGACG
CGGAAGCCAGGGCTGGGGAGGAAAAGCCCTCGGCGACAGCGCCTCCTCCT
GAAGCACCTTTGGTGGCGTCAATTTGCGTCCAAGGACCTGACTCATACCT
GCCGTTTCATGCAAGCGCCGGGGCGCCTACAGCCGAATCTCCGGATGGAG
AAGCAGCGGCGGCGGTGGCAACGACAGCCGAGGGGATGCCAGATGATGAT
TGGCTTCAGCTTGAGGACGGGGACGAGAGTTTCCCACCCTCGATCGCATG
TGCCAGCGAGGGCGGTATCGATCCCGTTCAAGAGCTTCTGGATCTGGGCA
TCAGCGGTGATGTGGCTAGGGCGGCGACCCAGACTCTTAGGGCCCGCATC
CTGAACGCCCGCGCTTTGGAACGCGTGGAAGATCGCCATGAAGAGGTGCG
TCTTGCCATCGACGAATTCAAGCAGACGGCCTTCGGTCGGCAGTCAGACG
CATGGCTACACGGCCGCGGCTGGGCGTTGGTCCCCCTTTTTTCCACGGAG
GCCGTCCACGACAAATTAAGCTCCATGACCAAGACGGTCGAGGATAACCT
TCTCTACAAAGTGTCGGAAGGGCATTTTGAGCTCCCAAAGAATTTCAGCG
CGCCACGCATCAACGGAGAGCACCGATACATGGTCAATCCCCTCGAAAAA
AGATACCGGCGAAAGTTGGGGGACGACTTCGTCAAGAGCTCGGAGGAAGT
TGGCGAAACGCTGGCGTTTGTGCTGCAGGCTCTGGACTACGGATACCAGC
GCAGCGTTGACGTGGAGAACCTCATTCTGCTCTTGAGCGCTGCAGGGAAG
CAAGTGCAGATTTTGCACAAAGACCAGGACGGAGCTGAAGTTTCGAAGAG
GCTGGAGGACACGGGATCAGGCACGCGGGGCGCTCCCGAACCGGCCCCGT
ATTCGGCCATTTGCGCTTTTCAGGAGGGTGCTGTACTACATGTGATCGAA
GCAAGCCACAGGAATCTTCTGCGCGACGAGTTCGACTGGGGAGACACCAA
GGAACTGAAAATTCCACGTGGGTGGGGTCTTCTCTTTCATTCATGCTTAG
TACACGCCGGGGGTTCTTACGAATCCGTGAATGGGCGACTCCATTTTTAC
CTCAAGATGGCGCATGGCTTACTATCGGTAGACGGGAAGTTCAAGTTGGT
TGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig610:26220..27773-

>mRNA_P-littoralis_Contig610.13.1 ID=mRNA_P-littoralis_Contig610.13.1|Name=mRNA_P-littoralis_Contig610.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1248bp|location=Sequence derived from alignment at P-littoralis_Contig610:26220..27773- (Pylaiella littoralis U1_48)
GCGCAGGAAGTGGACATTCGGGTGGCTCAGCTCCAACAACAGAATGAGAT
GCTTGAACGACGACTGGAAGTGCAACGGCTGATTGCATTGGACGCGGAAG
CCAGGGCTGGGGAGGAAAAGCCCTCGGCGACAGCGCCTCCTCCTGAAGCA
CCTTTGGTGGCGTCAATTTGCGTCCAAGGACCTGACTCATACCTGCCGTT
TCATGCAAGCGCCGGGGCGCCTACAGCCGAATCTCCGGATGGAGAAGCAG
CGGCGGCGGTGGCAACGACAGCCGAGGGGATGCCAGATGATGATTGGCTT
CAGCTTGAGGACGGGGACGAGAGTTTCCCACCCTCGATCGCATGTGCCAG
CGAGGGCGGTATCGATCCCGTTCAAGAGCTTCTGGATCTGGGCATCAGCG
GTGATGTGGCTAGGGCGGCGACCCAGACTCTTAGGGCCCGCATCCTGAAC
GCCCGCGCTTTGGAACGCGTGGAAGATCGCCATGAAGAGGTGCGTCTTGC
CATCGACGAATTCAAGCAGACGGCCTTCGGTCGGCAGTCAGACGCATGGC
TACACGGCCGCGGCTGGGCGTTGGTCCCCCTTTTTTCCACGGAGGCCGTC
CACGACAAATTAAGCTCCATGACCAAGACGGTCGAGGATAACCTTCTCTA
CAAAGTGTCGGAAGGGCATTTTGAGCTCCCAAAGAATTTCAGCGCGCCAC
GCATCAACGGAGAGCACCGATACATGGTCAATCCCCTCGAAAAAAGATAC
CGGCGAAAGTTGGGGGACGACTTCGTCAAGAGCTCGGAGGAAGTTGGCGA
AACGCTGGCGTTTGTGCTGCAGGCTCTGGACTACGGATACCAGCGCAGCG
TTGACGTGGAGAACCTCATTCTGCTCTTGAGCGCTGCAGGGAAGCAAGTG
CAGATTTTGCACAAAGACCAGGACGGAGCTGAAGTTTCGAAGAGGCTGGA
GGACACGGGATCAGGCACGCGGGGCGCTCCCGAACCGGCCCCGTATTCGG
CCATTTGCGCTTTTCAGGAGGGTGCTGTACTACATGTGATCGAAGCAAGC
CACAGGAATCTTCTGCGCGACGAGTTCGACTGGGGAGACACCAAGGAACT
GAAAATTCCACGTGGGTGGGGTCTTCTCTTTCATTCATGCTTAGTACACG
CCGGGGGTTCTTACGAATCCGTGAATGGGCGACTCCATTTTTACCTCAAG
ATGGCGCATGGCTTACTATCGGTAGACGGGAAGTTCAAGTTGGTTGAG
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