mRNA_P-littoralis_Contig610.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig610.10.1
Unique NamemRNA_P-littoralis_Contig610.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig610.10.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 6.960e-6
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    7 DEYCDKNPSKCRWLIKYPLYRHLFLSRPDGKTVAPNSENVN-VCHTRRQKDAFETMAEMSGDVLKHDIDLFVKLDAKYLLTAREK 258
            +E+ D   S C++L++YPLYR L LSR D   + P +E+ + V  T R +DA+ + A  S    K D+D+F  +   Y   ++EK
Sbjct:  913 EEFGDGGSSTCQFLMRYPLYRLLDLSRVDNLPLCPTTEHSSHVSPTLRHRDAY-SQAFSSHSKRKADLDVFDIIKGGYHSVSQEK 996
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig610.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH64_ECTSI6.960e-636.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig610contigP-littoralis_Contig610:15880..16137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791273.3422253-CDS-P-littoralis_Contig610:15879..161371680791273.3422253-CDS-P-littoralis_Contig610:15879..16137Pylaiella littoralis U1_48CDSP-littoralis_Contig610 15880..16137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig610.10.1prot_P-littoralis_Contig610.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig610 15880..16137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig610.10.1

>prot_P-littoralis_Contig610.10.1 ID=prot_P-littoralis_Contig610.10.1|Name=mRNA_P-littoralis_Contig610.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
GGDEYCDKNPSKCRWLIKYPLYRHLFLSRPDGKTVAPNSENVNVCHTRRQ
KDAFETMAEMSGDVLKHDIDLFVKLDAKYLLTAREK
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mRNA from alignment at P-littoralis_Contig610:15880..16137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig610.10.1 ID=mRNA_P-littoralis_Contig610.10.1|Name=mRNA_P-littoralis_Contig610.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig610:15880..16137- (Pylaiella littoralis U1_48)
GGTGGTGATGAGTACTGCGATAAGAACCCTTCTAAATGCCGGTGGTTGAT
AAAATACCCCCTGTATCGTCATTTGTTTCTGTCGAGACCCGATGGAAAGA
CCGTTGCTCCGAACTCGGAGAATGTCAATGTCTGTCACACGAGGCGTCAA
AAAGACGCTTTCGAGACGATGGCGGAGATGTCGGGTGATGTATTGAAGCA
CGATATTGATCTGTTTGTAAAGCTCGACGCAAAATATCTTTTGACGGCAC
GGGAAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig610:15880..16137-

>mRNA_P-littoralis_Contig610.10.1 ID=mRNA_P-littoralis_Contig610.10.1|Name=mRNA_P-littoralis_Contig610.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig610:15880..16137- (Pylaiella littoralis U1_48)
GGTGGTGATGAGTACTGCGATAAGAACCCTTCTAAATGCCGGTGGTTGAT
AAAATACCCCCTGTATCGTCATTTGTTTCTGTCGAGACCCGATGGAAAGA
CCGTTGCTCCGAACTCGGAGAATGTCAATGTCTGTCACACGAGGCGTCAA
AAAGACGCTTTCGAGACGATGGCGGAGATGTCGGGTGATGTATTGAAGCA
CGATATTGATCTGTTTGTAAAGCTCGACGCAAAATATCTTTTGACGGCAC
GGGAAAAG
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