mRNA_P-littoralis_Contig61.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.49.1
Unique NamemRNA_P-littoralis_Contig61.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:283063..283776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons2
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.7439497-UTR-P-littoralis_Contig61:283062..2831081680791268.7439497-UTR-P-littoralis_Contig61:283062..283108Pylaiella littoralis U1_48UTRP-littoralis_Contig61 283063..283108 -
1680791268.7547996-UTR-P-littoralis_Contig61:283353..2833681680791268.7547996-UTR-P-littoralis_Contig61:283353..283368Pylaiella littoralis U1_48UTRP-littoralis_Contig61 283354..283368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.766204-CDS-P-littoralis_Contig61:283368..2837761680791268.766204-CDS-P-littoralis_Contig61:283368..283776Pylaiella littoralis U1_48CDSP-littoralis_Contig61 283369..283776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.49.1prot_P-littoralis_Contig61.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 283369..283776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.49.1

>prot_P-littoralis_Contig61.49.1 ID=prot_P-littoralis_Contig61.49.1|Name=mRNA_P-littoralis_Contig61.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
VGDDGDGADSHDNGAGDAGEAEDGNNDGRDDGVGSSDTHDTGAYGGAGAG
SGNGDARNSEDGDTRNSGDGDARNSEDGDALNFEDNESLPDLAQDDDNFD
KSSRVIDGLFLGIVESDNENGVDASGSGSSDSDDA*
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mRNA from alignment at P-littoralis_Contig61:283063..283776-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.49.1 ID=mRNA_P-littoralis_Contig61.49.1|Name=mRNA_P-littoralis_Contig61.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig61:283063..283776- (Pylaiella littoralis U1_48)
GTTGGGGACGACGGTGACGGAGCGGACAGCCACGACAACGGCGCCGGCGA
CGCCGGCGAAGCCGAAGACGGGAACAACGATGGTCGTGACGACGGCGTAG
GCAGTTCCGACACTCACGACACCGGTGCGTACGGTGGAGCCGGTGCGGGC
AGCGGCAACGGCGACGCCCGCAATTCCGAGGACGGCGATACCCGCAATTC
CGGGGATGGCGATGCCCGCAATTCTGAGGACGGCGACGCCCTCAATTTCG
AGGACAATGAAAGTCTCCCGGATCTCGCCCAAGACGACGACAACTTCGAT
AAGTCGAGCCGTGTCATTGATGGCCTATTTTTGGGCATCGTCGAGAGCGA
CAACGAGAACGGTGTCGACGCGTCTGGGTCCGGCAGTTCCGACAGCGATG
ATGCCTAATTCGACCAATCTCTGGTGCGTTCCTCCCTTTTAGTTTAGCAA
CCCAAAGTTTTCAGTTTTATACCCCGAGGGTCGGCCTCTGTTGGTCTTCC
CGTAAGAGGCTAGTCATTTGCCGCAATACGTCTTCTGTTTTTTTTCGTTC
GTGGTTGGATCTCGTCATCGTAACTGTCAATGTTCAAGCTACTTATACAT
GGGCGTCCTCCAAACATGGTTCCTTCGTCCTTCTTGTGCATTTTCGCAAC
GTATCGCCCTTGGCGCAGAGATGACGGCGGCAGGCGCAAAGACCGGACGG
AGGAGGGCGGCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:283063..283776-

>mRNA_P-littoralis_Contig61.49.1 ID=mRNA_P-littoralis_Contig61.49.1|Name=mRNA_P-littoralis_Contig61.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig61:283063..283776- (Pylaiella littoralis U1_48)
GTTGGGGACGACGGTGACGGAGCGGACAGCCACGACAACGGCGCCGGCGA
CGCCGGCGAAGCCGAAGACGGGAACAACGATGGTCGTGACGACGGCGTAG
GCAGTTCCGACACTCACGACACCGGTGCGTACGGTGGAGCCGGTGCGGGC
AGCGGCAACGGCGACGCCCGCAATTCCGAGGACGGCGATACCCGCAATTC
CGGGGATGGCGATGCCCGCAATTCTGAGGACGGCGACGCCCTCAATTTCG
AGGACAATGAAAGTCTCCCGGATCTCGCCCAAGACGACGACAACTTCGAT
AAGTCGAGCCGTGTCATTGATGGCCTATTTTTGGGCATCGTCGAGAGCGA
CAACGAGAACGGTGTCGACGCGTCTGGGTCCGGCAGTTCCGACAGCGATG
ATGCCTAA
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