mRNA_P-littoralis_Contig61.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.117.1
Unique NamemRNA_P-littoralis_Contig61.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: D8LMS2_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS2_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 4.510e-136
Identity = 203/218 (93.12%), Postives = 210/218 (96.33%), Query Frame = 1 
Query:  241 VATVA-RGGVLASSNPLELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            VATVA RGGVLASSNPLELNGGSCLAMAGK CVALAVDRRFGLEGQLVSTEAKRVLK+NGQLLCGFTGLWTD LTVMQDLSSEVALKSL E DRPI+PAALAGLLSTLLYSRRGSP+FVEPIVAGLD RG+PY+CGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFR GMEREELFR ASRCLLSALERDCLSGYGAVVHLITE+GIE+RELTTRMD
Sbjct:    3 VATVALRGGVLASSNPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVSTEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A835YVV6_9STRA (Proteasome beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV6_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.330e-69
Identity = 122/219 (55.71%), Postives = 154/219 (70.32%), Query Frame = 1 
Query:  226 RAIAFVATVARGGVLASS-NPLELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDD-FVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESREL 876
            R +  V     G  LA   +PLELNGGSCL MAG+ C+A+AVD+RFG   +LVS  A+RVLK++ +LLC FTGL TD  T+MQDL++  A  ++ EG RP+ PAA A LLS++LY+RR SP+F E IVAGL    + ++   D+LGA    +D F V GTSA+SLYG CEAF+R  M  EEL   A  CL++ALERDCLSG+G VVHL+TE GI SREL
Sbjct:   13 RRLLLVGAALVGAALAQQQSPLELNGGSCLVMAGRKCLAVAVDKRFGKGNELVSDNARRVLKLHSRLLCAFTGLTTDVQTLMQDLAAAAASYTITEG-RPLQPAAAAALLSSMLYARRRSPYFCETIVAGLTRSAEAFVRSHDVLGAAGGAEDGFAVMGTSAESLYGLCEAFYRPDMTPEELADTAEHCLVAALERDCLSGHGVVVHLLTEQGISSREL 230
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A6H5JNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ3_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 3.110e-65
Identity = 112/142 (78.87%), Postives = 117/142 (82.39%), Query Frame = 1 
Query:  466 MQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            MQDLSSEVALKSL E DRPI+PAALAGLLSTLLYSRRGSP+FVEPIVAGLD RGKPY+CGQ                    SLYGTCEAFFR GMEREELFR ASRCLLSALERDCLSGYGAVVHLITE+GIE+RELTTRMD
Sbjct:    1 MQDLSSEVALKSLAEADRPIAPAALAGLLSTLLYSRRGSPWFVEPIVAGLDPRGKPYLCGQ--------------------SLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 122
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A3P3Y3V5_PLABS (Proteasome subunit beta n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3V5_PLABS)

HSP 1 Score: 216 bits (551), Expect = 8.210e-65
Identity = 101/202 (50.00%), Postives = 146/202 (72.28%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            LE NG + +AM GKDCVA+A D R+G++ Q V+T+ +++ K++ +L  G +GL TD  TV   L  ++ L  L E +R I P   A L+ST+LYS+R  P+FVEP+VAG+D +GKP+IC  D++GAPV  +DFVV+GT+++ LYGTCE+ +   +  EELF   S+ LL+A++RDCLSG+GA VH+IT+DG+ SR+L  R D
Sbjct:    4 LEYNGSAIVAMVGKDCVAIASDTRYGVQAQTVATDMEKIFKMHDRLYVGLSGLATDMQTVRNTLQFQLKLYKLRE-EREIEPHVFANLVSTMLYSKRFGPYFVEPVVAGIDKKGKPFICAMDLIGAPVFAEDFVVSGTASEELYGTCESLYTPNLGPEELFETVSQALLAAVDRDCLSGWGATVHIITKDGVTSRKLKCRQD 204
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: M2W804_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W804_GALSU)

HSP 1 Score: 214 bits (546), Expect = 4.880e-64
Identity = 104/202 (51.49%), Postives = 144/202 (71.29%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            L  NGG  LAMAG +CVA+A DRRFG++   + T+  R+ KIN +L+ G TGL TD  T+       + L  L E +R I PA+ A ++++ LYSRR SP+FVEP+VAGL  +G+PY+C QD+LGAP+  +DFVV+GT A+SLYGT E F++  +   ELF   S+ LL+A++RDCLSG+GA+VH+IT +GIE++ L  RMD
Sbjct:    6 LTYNGGCVLAMAGDNCVAIAADRRFGVQQTTIGTDTTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLRE-EREIKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQDLLGAPLFAEDFVVSGTCAESLYGTSETFWKPNLSPAELFEVTSQSLLAAVDRDCLSGWGAIVHMITLNGIETKVLKARMD 206
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.420e-62
Identity = 101/202 (50.00%), Postives = 142/202 (70.30%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            LE NG + +AMAGKDCV +A D R G++ Q V+T+ K+V K+N +L CG  GL +D  T+ Q L     L  L E +R ++P   + LLSTLLY +R  P+FVEPIVAGLD++GKP++ G D++GAPV  DDFVV+GT   ++YG CE  ++  ME ++LF   ++ LL++++RD LSG+G VVH+IT+DG+ SREL  R D
Sbjct:    4 LEYNGAAIIAMAGKDCVGIAADTRLGVQAQTVATDFKKVFKMNDRLFCGLAGLASDVQTLDQLLKFRQNLYELRE-EREMTPEVFSNLLSTLLYEKRFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204
[Close]
BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A2V3J6M2_9FLOR (Proteasome subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6M2_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 1.570e-61
Identity = 100/202 (49.50%), Postives = 145/202 (71.78%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            LE NGG  LAMAGK+CVA+A D+R G++   V+ +A R+ +++ +L  G TGL TD  T+ Q    ++ L ++ E +R + P   A L+S+ LYS+R +P+F EP++AGLD   KPYIC  D+LG   E  +FVVAGT A+SL+GTCE F++  +E +ELF   S+ LL+AL+RDC+SG+GAVVH+IT+DG++++EL  RMD
Sbjct:    4 LEYNGGCVLAMAGKECVAIASDKRLGVQLTTVAMDANRIFRMHDKLYLGLTGLMTDIQTLDQLFRFKLELYAMRE-NRLMKPKTFASLVSSTLYSKRFAPYFSEPVIAGLDKDNKPYICSMDLLGCVAEETEFVVAGTCAESLFGTCETFYKKDLEPDELFETVSQALLAALDRDCISGWGAVVHIITKDGVQTKELDGRMD 204
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: A0A0H5R549_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R549_9EUKA)

HSP 1 Score: 207 bits (527), Expect = 3.110e-61
Identity = 97/202 (48.02%), Postives = 140/202 (69.31%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            +E NG + +AM GKDCVA+A D R+G++ Q ++T+ ++V K++ +L  G +GL TD  TV   L   + +  L E +R I P   + +LST+LY +R  P+FVEP+VAG+D  GKP+IC  D+LGA V  DDFVV+GT+ + LYGTCE+ +   +  +ELF   S+ LL+A +RDCLSG+GAVVH++T+D I +R L TR D
Sbjct:    4 MEYNGSAVVAMLGKDCVAIASDTRYGVQAQTIATDMQKVFKMHDRLYVGLSGLSTDMQTVRNRLEFRLKMYKLRE-EREIEPKVFSNMLSTMLYEKRFGPYFVEPVVAGIDKAGKPFICAMDLLGAAVYADDFVVSGTTGEELYGTCESLYSPNLSPDELFETVSQALLAACDRDCLSGWGAVVHILTKDNITTRVLKTRQD 204
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BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: F2TVC7_SALR5 (Proteasome subunit beta n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVC7_SALR5)

HSP 1 Score: 204 bits (520), Expect = 3.420e-60
Identity = 95/202 (47.03%), Postives = 141/202 (69.80%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            +E NG + +AM GK+CVA+A DRR G + Q VST+ ++V ++  +L  G  GL TDA+TV Q L   + + +L E +R I P  +  L+S+ LY RR  P+FVEP+VAGLDS+ +PY+   D++G P+E  DFVV GTS++ LYG CE+ ++  M  ++LF   S+ L++A++RDCL+G+GA+VH+I +D I +REL  RMD
Sbjct:    4 MEYNGSAVVAMTGKECVAIAADRRLGAQAQTVSTDFQKVFQMGPKLFVGLPGLGTDAITVSQRLKFRLNMYTLRE-ERDIEPKTMINLVSSFLYERRFGPYFVEPVVAGLDSKNQPYVASTDLIGCPMETSDFVVGGTSSEQLYGMCESLYKPDMAPDDLFETISQALMNAVDRDCLAGWGAIVHIIEKDKITTRELKARMD 204
[Close]
BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Match: R7QTK3_CHOCR (Proteasome subunit beta n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTK3_CHOCR)

HSP 1 Score: 204 bits (520), Expect = 3.420e-60
Identity = 99/202 (49.01%), Postives = 137/202 (67.82%), Query Frame = 1 
Query:  286 LELNGGSCLAMAGKDCVALAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEVALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYICGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCLLSALERDCLSGYGAVVHLITEDGIESRELTTRMD 891
            LE NGG  +AMAGKDCVA+A D R G++   V+ +A R+  ++ +L  G TGL TD  T+ Q     + +  + E +R I P   + L+S+ LY +R  P+F EP++AGLD   KP++C  D+LG   E DDF VAGT A+SL GTCE F+R  +E E+LF   S+ LL+AL+RDC+SG+GAVVH+IT+DG+ +REL  RMD
Sbjct:    4 LEYNGGCVIAMAGKDCVAIASDHRLGVQLTTVAMDATRIFPMHDKLYLGLTGLMTDITTLDQLFRFRLEMYEMRE-NRKIKPKTFSNLVSSTLYGKRFGPYFSEPVIAGLDKDNKPFLCSMDLLGCIAEADDFAVAGTCAESLLGTCETFYRPNLEPEDLFETVSQSLLAALDRDCISGWGAVVHIITKDGVTTRELDGRMD 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS2_ECTSI4.510e-13693.12Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A835YVV6_9STRA1.330e-6955.71Proteasome beta subunit n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNZ3_9PHAE3.110e-6578.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3P3Y3V5_PLABS8.210e-6550.00Proteasome subunit beta n=2 Tax=Plasmodiophora bra... [more]
M2W804_GALSU4.880e-6451.49Proteasome subunit beta n=1 Tax=Galdieria sulphura... [more]
A0A7S2XNS4_9STRA1.420e-6250.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2V3J6M2_9FLOR1.570e-6149.50Proteasome subunit beta n=1 Tax=Gracilariopsis cho... [more]
A0A0H5R549_9EUKA3.110e-6148.02Proteasome subunit beta n=1 Tax=Spongospora subter... [more]
F2TVC7_SALR53.420e-6047.03Proteasome subunit beta n=1 Tax=Salpingoeca rosett... [more]
R7QTK3_CHOCR3.420e-6049.01Proteasome subunit beta n=1 Tax=Chondrus crispus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:636741..641250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMS2
Preferred namePBC1
PFAMsProteasome
Model size1377
Max annot lvl2759|Eukaryota
KEGG koko:K02735,ko:K03660
KEGG Pathwayko03050,ko03410,map03050,map03410
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010950,GO:0010952,GO:0012505,GO:0016020,GO:0016504,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0030162,GO:0030163,GO:0030234,GO:0031090,GO:0031323,GO:0031325,GO:0031597,GO:0031984,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0042175,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0052547,GO:0052548,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons3
Evalue1.72e-139
EggNOG OGsCOG0638@1|root,KOG0180@2759|Eukaryota
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-02_003440.1
EC3.4.25.1,4.2.99.18
Descriptionthreonine-type endopeptidase activity
Cds size855
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791272.4809778-UTR-P-littoralis_Contig61:636740..6367791680791272.4809778-UTR-P-littoralis_Contig61:636740..636779Pylaiella littoralis U1_48UTRP-littoralis_Contig61 636741..636779 +
1680791272.5418668-UTR-P-littoralis_Contig61:640767..6412501680791272.5418668-UTR-P-littoralis_Contig61:640767..641250Pylaiella littoralis U1_48UTRP-littoralis_Contig61 640768..641250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791272.5015726-CDS-P-littoralis_Contig61:636779..6371481680791272.5015726-CDS-P-littoralis_Contig61:636779..637148Pylaiella littoralis U1_48CDSP-littoralis_Contig61 636780..637148 +
1680791272.5130935-CDS-P-littoralis_Contig61:637987..6382271680791272.5130935-CDS-P-littoralis_Contig61:637987..638227Pylaiella littoralis U1_48CDSP-littoralis_Contig61 637988..638227 +
1680791272.5282826-CDS-P-littoralis_Contig61:640521..6407671680791272.5282826-CDS-P-littoralis_Contig61:640521..640767Pylaiella littoralis U1_48CDSP-littoralis_Contig61 640522..640767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.117.1prot_P-littoralis_Contig61.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 636780..640767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.117.1

>prot_P-littoralis_Contig61.117.1 ID=prot_P-littoralis_Contig61.117.1|Name=mRNA_P-littoralis_Contig61.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=285bp
MDLTSLEDHTCNTKRTRCCAGPGRRRHDRLRSHSDGNKRRTNRPASAFFA
NYQARRRLPLLIRAIAFVATVARGGVLASSNPLELNGGSCLAMAGKDCVA
LAVDRRFGLEGQLVSTEAKRVLKINGQLLCGFTGLWTDALTVMQDLSSEV
ALKSLEEGDRPISPAALAGLLSTLLYSRRGSPFFVEPIVAGLDSRGKPYI
CGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRVGMEREELFRAASRCL
LSALERDCLSGYGAVVHLITEDGIESRELTTRMD*
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mRNA from alignment at P-littoralis_Contig61:636741..641250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.117.1 ID=mRNA_P-littoralis_Contig61.117.1|Name=mRNA_P-littoralis_Contig61.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4510bp|location=Sequence derived from alignment at P-littoralis_Contig61:636741..641250+ (Pylaiella littoralis U1_48)
AAAAATGTCACCCAACAGCTCCAGACGTCAAACACAAGGATGGATCTAAC
CAGCCTTGAGGACCACACTTGCAACACAAAACGAACACGATGCTGTGCGG
GGCCCGGGCGTCGAAGGCATGACCGGCTTCGTTCTCACAGCGACGGCAAC
AAACGACGAACAAATCGGCCTGCTTCCGCGTTTTTTGCCAATTATCAGGC
TCGCCGACGGCTACCGCTGTTGATCCGGGCCATCGCGTTTGTAGCAACGG
TAGCCAGGGGAGGGGTATTGGCATCCTCCAATCCTCTCGAACTCAACGGC
GGATCTTGTCTAGCCATGGCGGGGAAGGACTGCGTGGCGCTGGCCGTGGA
TCGGCGGTTCGGGCTGGAAGGGCAACTTGTCTCGACAGAGGCAAAACGTG
TCTTGAAGGTAGGTGGGCAGCAGTGGGCAAACGCAGCTTCGGCTACAGCC
TGCAGAACTTTATCTTTTGCGATATTGCACCGACGACACAAGAGCAAGCC
AGAAGAGAAAGTCCCGTGATTGACACCTTTCATGCTTGAGTTGTTTGCGT
AGAACAATGACACTAGCGATCGTACGAGGAACACCAACTTGGCAACAAAA
ACTCAAAAACCACGCCTTCGAGAAAAGGGAAAGAATCTTCGCGGGACTGT
CACTTTTTCTCCGACCACGTTGAAATTGCGTTTCAGGCAGGCCGGAGGCC
TACGATGCGGCAACCGCAGGCTGCCGCAACAGCACGCCGGAGGCATTGAG
GCCTAGGGACGTTTTTTGCACTCAAGCACTTCAAAATTTTCACTTCACAG
CACTACTGCTTGCTGTATGTTATGTATGTCGAACAGTTTTTTTCACCTGC
GGCCAAAAAATGATCGCCCGAATATTTTGCGGTAAGCCATCGGAGGGAGG
CAAACACTGACAACAGCAGCGAACAAGGTGTTGCGCTTTCCCCAACTTTC
TGTGAAGACGTTTCACGACCGCAACAGCCATCTGAAGCGCTGCCCGGGTT
CGTCTACGTGTACCACTGTCCTTGTCACATCTGATGTCCGGATGGTTCAC
AATGCACCTTCCGCTTGCTTGCCTGGTTTACGATGCGGGAATTGAATGGC
AACTCGCCACACCCATCCAGAACTACCGTATTTTGTTGTCACTAAAAACG
CAAAAGACATCCCTGTCATGAATTTACTGTCTGTATAGCAGTACAGCAGT
ATTACATCGAAACCGCTGTGTTCATCCTGCGAACGATCCCAACACAGATC
AACGGCCAGCTACTCTGCGGATTCACGGGACTGTGGACGGACGCCTTGAC
GGTGATGCAAGACCTGTCATCGGAGGTAGCCCTCAAGAGTCTCGAGGAGG
GTGACCGCCCCATCTCCCCGGCGGCCCTCGCGGGTCTGCTCTCTACCCTG
CTCTACTCGCGTCGAGGGAGCCCTTTCTTTGTCGAGCCAATCGTGGCGGG
TTTGGACTCGCGGGGGAAGCCATATATCTGCGGGCAGGTATGCATGTGTT
TGCATCTACATATATTATCCGTGTGTGCGCGTGTGCGCGCGCGCCCGCGC
GCATGCGTGTCGGCGTGTAACGTGTATCGATGTGTTTTTTTGTCGGCAAG
AGGACTGGAGCTGAATTATTCAAACATGATACTCAGCAGTGTTCGCGTTG
ATAATAGAGTCGACTCTCTTCGGGTTTTATAACGCTGAGATTCGGGTTGC
AACTCCATCCATCGCCTTCGGTGACGGTGAACTTTTTTTGAGTCCTCTGT
CAAGGCTGGAGACCCCTCCCTCCGTGGCATCGGCAGGTATACCGATTTCA
TGTGGCATCGCGCAGGGAGGGTGCCCATTACCATAGCTGGCCGTAGCCTG
TCGCATGGATACTGCGCCAGGACGGGGCAACAAGTGGTGTTCACCGTGGA
GGCTAAAATAAACAGGGGTACAGCAGCGATCCATAGTCCTATGGCGTGCC
CGATTGACGAATTGTACAGCTGTTTACAGCAGTACACGTCTCTTTTTCAC
AAGGGGGTTGGCGAAAAAATGCGGGTCTGGGCGTCGGTGGGGAGATGGGC
ACACGCTGGTTCCTTGTAGATGAAGACCAGGTGTAAGCACTCTTCTATGT
CCCGATGGCCAGGCGTTGAGCGAACTCTCCTCCCCACAACGTACGACTTC
CCACCCTGAACATGTGTAACACGGTATGATAGCTATCACCTCCCGCAGAG
ATTGGTGTTGCCACCCGTCGTGAGTAGGATAAAGGGATGAGTATTTCGAG
CTGTCGCACCTGCCGGCATACGCAGTCCTTGTCATGTTCTTGACGTACCG
TAGAGACCGGTGTCGTACCCCCGGCGGGGGGTACGTTTTTTTTTCCGAAA
ACAAACTCCCCGGAGCCAAATTAAGTCTCGCGAGGGGATCTTTATTTTTT
CTTTGAGATCACCCCGGGGGGAAATCTCCCCTGGGGGGAAACCAATATTT
TGTTTTCCGAACTTTACCCCGGAGGGTTAGCCCATAAAAAACACCTGCAC
GCACAGCAAACACACTTACAGCAGTTAGTAGTCTTTTTGAACCCACGATG
GACAAGATCTTGTATTTTCTTGTAGAAGCAGTTACCGGTACAGCAGTCGT
TAGACGGGGGTTGCTGGGCGTCAACATGGGGTAGCGCTGCTCTTTGCGTT
CTTCGTCTCCTTTTTCGTTTTAGTACAAGGTGTGATATATTTTCTCTGTG
GTGTGATGTGTGCTGAGTGAACCACATCGTGGCACTCTCTTTCTCAATGG
CGGAAATCAATAAAATAATTAAAAAGCATCTGTTCTCTGAACAAACAAGT
GGTCTTAATTGATCACGTGTGGTCTTGATTGATTACGCACCGCAGTCACC
GCAGTCACTGCTATCCAAGCAATCCAGGCCTGAGTGTGCGTTCGGCTCGC
CCTTCATGACAACTACCTAGGAATAGCAATAAAACACCACGGCATATATT
CGTAGCTTGTATAGATGTACGAGAAGTGCCGAACGAGAACAGCTTGCCGG
CCTCAAAGAGCCGGCGCTTTTCATTCGCAGTGATGCCAAAATCGCAAGAA
TAATCTTCAGAAAAATAGACCCGGGGGGAACGAATCAGAAAAAAATTACC
TCGGGGGAAAATTGTGTCTCGGAGGGGGGCTTGTTTTTTTGTAACAGACG
TTCCCCCCGGGGCCAAATCAAAGGTTTCATGGTTCAAGGCTAAAAAGGTG
ATGAGGGGGGGGGGGTGAGCACCATAGGGGGGTACGACACCGGTCTCTAC
GGTAATATTGTGAAGAAATAAGTGAGTTTGAAATATAACACCGCCGGGTG
GGCGGGTGGGGTCTCAACAGAGCGCTCTTCTGCCTCTGTTTTAGTGGCTA
AACGGGGTGTATGATTTTCGAAGTGAATTGATGCTGTGCTTCTCTCGAGC
CTGGCCTCCTCATATTTGACGTAGCTCGGCATCGATTCCATCGTTTATGA
TCTCCGTTTTTATATTACGCCAGTATTTTCGAACCAATTCTTCTTCACCT
ACAGTGTGATACAAATCAGTGGTATCACCTCCCGCTGTCGGCGTGAGCCA
CCCTCCTGTACTTTACAGTCTTGTCACAATGTGTGTCCTTCGCCTATGTG
AGTGTCAGACTTCAAGTCCCCAGAATCCAAACACATGGGTTATTTCATCA
ATATTGCATGCGTGGGCGGGTGCTTCTGCCCGAGTGGCATCACCTCTGCG
CCCATTCCTAAAACAAACCGAAAACCTTTTCACGCACCATCCGGTCCTCG
TCTTTCACACCACCCCCCCCCCCCCTCCCAGGATATTCTTGGCGCCCCCG
TGGAAGTAGACGACTTTGTGGTAGCAGGAACCTCGGCGCAGTCCCTCTAC
GGAACCTGCGAGGCTTTTTTCAGGGTCGGTATGGAGCGAGAGGAGCTGTT
TCGAGCGGCGTCCAGGTGCCTGCTGTCGGCGCTGGAGCGAGACTGCCTGA
GTGGCTACGGGGCGGTGGTGCACCTCATCACCGAAGATGGCATCGAATCG
CGAGAACTGACGACCCGTATGGACTGATCTGATTTTGGATCGATGAACAA
ATGAACTGGAAACTATTCGACTCTATTCCTTTTTTTGGGGCGATTGGGGG
TGCTTGAGATGTCCATGTTCTTTATTGCTTGCCGCCGGAGGTGTGACGCT
CGCAAGTGATGACAATGTTGGGGTTCTCGGGCTAGATACTGATCTACGGG
GACCCCGGCGTATACGTGGTGAGACGTGCTGATTCACTATCAACTACTGT
CTAGGCTATGGTAACAGTCATTCCGCCCTACCCCCCCAAGCGAATGGATG
GGGTAACAATACGCGTCGTTGAGGCAAGGGAGTTCGGAGGCGGGAGAGCC
CGAACAATTCGGAAAGGACTCATTTCCAGATATCGGTGGGATTGATGGCT
CTGCACATGCAGCCATATTTTACGCCCAGCGTGATGGTGTTGGTGTACTA
CAGTACGATTTTCCCGGCCTTTGTCGCGGTTGGTGGGTGGGTGGGTTTCA
GTCACAGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:636741..641250+

>mRNA_P-littoralis_Contig61.117.1 ID=mRNA_P-littoralis_Contig61.117.1|Name=mRNA_P-littoralis_Contig61.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=855bp|location=Sequence derived from alignment at P-littoralis_Contig61:636741..641250+ (Pylaiella littoralis U1_48)
ATGGATCTAACCAGCCTTGAGGACCACACTTGCAACACAAAACGAACACG
ATGCTGTGCGGGGCCCGGGCGTCGAAGGCATGACCGGCTTCGTTCTCACA
GCGACGGCAACAAACGACGAACAAATCGGCCTGCTTCCGCGTTTTTTGCC
AATTATCAGGCTCGCCGACGGCTACCGCTGTTGATCCGGGCCATCGCGTT
TGTAGCAACGGTAGCCAGGGGAGGGGTATTGGCATCCTCCAATCCTCTCG
AACTCAACGGCGGATCTTGTCTAGCCATGGCGGGGAAGGACTGCGTGGCG
CTGGCCGTGGATCGGCGGTTCGGGCTGGAAGGGCAACTTGTCTCGACAGA
GGCAAAACGTGTCTTGAAGATCAACGGCCAGCTACTCTGCGGATTCACGG
GACTGTGGACGGACGCCTTGACGGTGATGCAAGACCTGTCATCGGAGGTA
GCCCTCAAGAGTCTCGAGGAGGGTGACCGCCCCATCTCCCCGGCGGCCCT
CGCGGGTCTGCTCTCTACCCTGCTCTACTCGCGTCGAGGGAGCCCTTTCT
TTGTCGAGCCAATCGTGGCGGGTTTGGACTCGCGGGGGAAGCCATATATC
TGCGGGCAGGATATTCTTGGCGCCCCCGTGGAAGTAGACGACTTTGTGGT
AGCAGGAACCTCGGCGCAGTCCCTCTACGGAACCTGCGAGGCTTTTTTCA
GGGTCGGTATGGAGCGAGAGGAGCTGTTTCGAGCGGCGTCCAGGTGCCTG
CTGTCGGCGCTGGAGCGAGACTGCCTGAGTGGCTACGGGGCGGTGGTGCA
CCTCATCACCGAAGATGGCATCGAATCGCGAGAACTGACGACCCGTATGG
ACTGA
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