mRNA_P-littoralis_Contig61.116.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.116.1
Unique NamemRNA_P-littoralis_Contig61.116.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig61.116.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.570e-22
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:   79 MSSSIGTYLVLVTAGLSLTYLSFLLYTAYGLGALRVAAPFIGTIALVFAAAHCLDKAQHAED 264
            MSSS  TYLVLVT  LS+TYLSFL+Y+AYGLGA++ AAPF+GT+ALVFA AHCLD+A  AED
Sbjct:    1 MSSSAATYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAED 62
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE6.570e-2274.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:634147..636611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003430.1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791272.4237087-CDS-P-littoralis_Contig61:634146..6342381680791272.4237087-CDS-P-littoralis_Contig61:634146..634238Pylaiella littoralis U1_48CDSP-littoralis_Contig61 634147..634238 -
1680791272.4346795-CDS-P-littoralis_Contig61:636388..6366111680791272.4346795-CDS-P-littoralis_Contig61:636388..636611Pylaiella littoralis U1_48CDSP-littoralis_Contig61 636389..636611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.116.1prot_P-littoralis_Contig61.116.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 634147..636611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.116.1

>prot_P-littoralis_Contig61.116.1 ID=prot_P-littoralis_Contig61.116.1|Name=mRNA_P-littoralis_Contig61.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
FPLFTFHVPLPLLSHSLPLSAPLQSAMSSSIGTYLVLVTAGLSLTYLSFL
LYTAYGLGALRVAAPFIGTIALVFAAAHCLDKAQHAEDAKTEAASLERAS
GAGAG
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mRNA from alignment at P-littoralis_Contig61:634147..636611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.116.1 ID=mRNA_P-littoralis_Contig61.116.1|Name=mRNA_P-littoralis_Contig61.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2465bp|location=Sequence derived from alignment at P-littoralis_Contig61:634147..636611- (Pylaiella littoralis U1_48)
TTCCCACTTTTCACTTTTCACGTCCCACTTCCGCTCCTCTCGCACTCGCT
CCCCCTCTCAGCCCCGCTACAGAGCGCGATGAGTTCCTCGATCGGCACTT
ATCTTGTCCTCGTGACTGCCGGGTTATCTCTGACGTATTTGAGCTTCCTC
TTGTACACTGCGTATGGCCTTGGAGCTTTGAGAGTCGCAGCGCCGTTCAT
CGGAACTATTGCACTTGTATTCGGTGAGTGTTTGAGCCGCAAGCTGCGGG
CTGTTCGTAACTGGATGTCGAACACCAGCCCTAGCAGCTACCTGTAGTGT
AGCAGCAGCAGGGTTGAGTTTGAGTTGGCGTTCTACTTGGAGGATAGAAG
CTTGTTTGTGTTCGGGTCTTGAGGGGAACGCTTTAAGAGCTCTAAGGGAT
GATGCCAACAACAAGTTTCCGTTGCATATCATGTCTCCTTCTTCTGTTTG
TGATGGGGTACGGAAAGGTCAAGCGAATGTAATGTGCCAATAATGTTCTT
CGAAGTACTTCGGTTCGGTGCGACTACTCGTACCGGCTGTCCATATTTTA
CCAAACAGTCGCCGGCGTCCAAGCCAAACACCGAAGCCTCCTGCGACCTC
GACCGTATATATATACAGCTGTTTTGTATTCGTTCATCACCGGGCTCATG
ATTTTCACAACTTTTTTTTTTTCTGTTTTCCTGTGGTTTCTCCATGCGGA
GGGATTACAGACATGCAGCACCTATCATACCATTCGCAGGATCTCACTCA
CCAACAGAGAACACACACGAACACACTCCACCCAACACAACAAACAGACG
GGGGTTCGCCGACGACGAGTGCTTCCCGCCACGCTTGCACTTTTTGCCGC
AGAGCTGCACCTTATTTTTGTGTGTGCCCCCCGTTGAAATTTCGATTGTT
AAACACGTGGCGGGCTACAGACAGCAGTCACAATAAAACATCCAACATCA
CCCTCCCCCCAAAAAGTCAGGATTGAGATCAAGATCAGGCTCATACCAGC
AACGATTCATCACCCATATACGTGTGGAAAGAACAAATTTGCAGCAGGAA
ATTGAATAGTTTGCCAAAATAAATATAAATACTCCGTATATCCGAGGCAA
ATGGTGGGTCCGGTACCAGTCCTATCGTGTACTGGTACAAAGTTTTGTTT
TGTATGGATTCTCGAATCGCGGTGAAATTGGACTATGGCAACGTCAAGCG
GGTCATGGACAAAATCAACAACTGCGACATGAAATCTGAACGTTCGGAGC
TCTTAGAAGGCTCGGTGTTGTCCCCTAGAGTCACTTCTGTGCCAACACCT
TGGCCGCTGGTTTGTGGCGGGAGCGCGCCAGGCATACAAAGCAAGTCATT
TGAGGAGCGACTCTTCGAAAGGCACATGCGGACGTGCATGTGACACCTCA
GGGACAGCAATTGAAGGCGATATCAGAACACCACCGTCGCGTTCTCGCTT
CCTCCACCACGTATCAAGGCGAAATTTTCTCGGCTATCACCTGTAATGAC
CGCTCTCCATCGGCAGGACGTTGGGTTGGCGGTGGGCTAATCCGATCGGC
CGAGAAACATCGCTCATTGTCTGACCTGCCAAGCGTAAAACACACAAGGC
ACATTTCCGCACTACACGTGTTATACCGCGTCAACATGACCAAAACTTGT
ATTTGATACACAGCGATGCTTCTTTCTGCCGATTGAATGAGCCCAACGCC
AGTTGTACGCTCTGCCGACGGAAAACAGTGGATGGAGGTGACAGCAGCAA
ACAAGGTTTCAATTTGGTTTGTGGTGCAGTGAGCAAAACATGACTGATCT
TCTAATGACGCCTTCCAGTTGTGTCTGGCGGGGATCATACACACGCCAGC
CCGCACACACCTTTTTGTGTGTCTGGCGCTCTTCCGCAACCTACCAGCGG
CCAAGGAGTCTGCGCAGTGACTGTGGGATTACACCGAGCCCTCTACGAGC
TGGCTACGTTCACATTCCACGGCGCAGTGCTTTGCATTGTCGCCTCAAGC
GTAGTGGTGTATTGAAAATCCGCCGCTCTCAACAAGATTTTCGCGACCGC
CGGAATTTGCAAATTTTGGCTCGACATTGATTTTTGGCGGTTTTTGGCGG
TTTCGGCCTGTTTGCGAACCTTTGATGACGTTTCAAGACAATTTACTCAT
CTGATAAGCAGCAACAAACGCAGTGAAATAGGCCTCGGTCTGAAAGATTT
TCCAAACTTCGATAAAGATATTTTGGCAACATCCTGTTACACCAGAAGCA
TGGGTGGAAGGGAAAGGTTACAAGTATCGTTGTGTTGTCAGCATTGGGCA
CGTGAAAGCATCAAGCATTTGACCGGCCTGTTACTCTCCCGTGCGCCTCC
CCTCACTTCCCATCATTTTGAAGCTGCCGCACATTGCCTTGACAAAGCAC
AACACGCGGAAGACGCCAAAACCGAAGCGGCATCCTTAGAAAGAGCATCG
GGGGCGGGAGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:634147..636611-

>mRNA_P-littoralis_Contig61.116.1 ID=mRNA_P-littoralis_Contig61.116.1|Name=mRNA_P-littoralis_Contig61.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig61:634147..636611- (Pylaiella littoralis U1_48)
TTCCCACTTTTCACTTTTCACGTCCCACTTCCGCTCCTCTCGCACTCGCT
CCCCCTCTCAGCCCCGCTACAGAGCGCGATGAGTTCCTCGATCGGCACTT
ATCTTGTCCTCGTGACTGCCGGGTTATCTCTGACGTATTTGAGCTTCCTC
TTGTACACTGCGTATGGCCTTGGAGCTTTGAGAGTCGCAGCGCCGTTCAT
CGGAACTATTGCACTTGTATTCGCTGCCGCACATTGCCTTGACAAAGCAC
AACACGCGGAAGACGCCAAAACCGAAGCGGCATCCTTAGAAAGAGCATCG
GGGGCGGGAGCGGGG
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