mRNA_P-littoralis_Contig61.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.109.1
Unique NamemRNA_P-littoralis_Contig61.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:608654..609155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size476
Hectar predicted targeting categorysignal anchor
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.5598485-UTR-P-littoralis_Contig61:608653..6088251680791268.5598485-UTR-P-littoralis_Contig61:608653..608825Pylaiella littoralis U1_48UTRP-littoralis_Contig61 608654..608825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.572466-CDS-P-littoralis_Contig61:608825..6088421680791268.572466-CDS-P-littoralis_Contig61:608825..608842Pylaiella littoralis U1_48CDSP-littoralis_Contig61 608826..608842 +
1680791268.583999-CDS-P-littoralis_Contig61:608869..6091551680791268.583999-CDS-P-littoralis_Contig61:608869..609155Pylaiella littoralis U1_48CDSP-littoralis_Contig61 608870..609155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.109.1prot_P-littoralis_Contig61.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 608826..609155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.109.1

>prot_P-littoralis_Contig61.109.1 ID=prot_P-littoralis_Contig61.109.1|Name=mRNA_P-littoralis_Contig61.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MLVNFCVSPSRGNGGVRPPLSELSTAFCRGRTVSKGSVGEGSHGQSHIIR
SCKRLDPYCRMVSPIEVCGCWLLVVVFIANTPVCGTVGVAFGRCFAARCR
Y
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mRNA from alignment at P-littoralis_Contig61:608654..609155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.109.1 ID=mRNA_P-littoralis_Contig61.109.1|Name=mRNA_P-littoralis_Contig61.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=502bp|location=Sequence derived from alignment at P-littoralis_Contig61:608654..609155+ (Pylaiella littoralis U1_48)
GGAACCTCGAAAGTGTGTGTCTTTCTTGATCAGGGTGCTTCCAAATCGCA
ACATTTTCAGGCGTACCAAACAAATAGCTCTTGTTTGCATGGGTACGGTT
CAAGTTTCGGACCACACTGTAGTAACGAACTTCGGTCAACTCCTTTGGCA
GTAAGTAACATTACTGTGATGAATGTTGGTCAATTTTTGTGGCAACAACA
GAGGGCTTGTTTGAATCGTTAGTCCTTCTCGTGGCAACGGAGGAGTCCGG
CCTCCTTTGTCGGAGTTGTCGACCGCTTTCTGTCGAGGACGTACAGTGTC
GAAGGGATCGGTGGGCGAAGGGAGTCACGGCCAGAGTCATATCATACGCT
CTTGCAAGCGCTTGGATCCCTACTGCAGAATGGTTTCGCCAATTGAGGTA
TGCGGGTGTTGGTTGCTCGTTGTGGTTTTTATCGCTAATACTCCGGTATG
TGGTACGGTGGGTGTTGCTTTCGGTCGTTGTTTCGCTGCTCGGTGTCGAT
AC
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:608654..609155+

>mRNA_P-littoralis_Contig61.109.1 ID=mRNA_P-littoralis_Contig61.109.1|Name=mRNA_P-littoralis_Contig61.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig61:608654..609155+ (Pylaiella littoralis U1_48)
ATGTTGGTCAATTTTTGCGTTAGTCCTTCTCGTGGCAACGGAGGAGTCCG
GCCTCCTTTGTCGGAGTTGTCGACCGCTTTCTGTCGAGGACGTACAGTGT
CGAAGGGATCGGTGGGCGAAGGGAGTCACGGCCAGAGTCATATCATACGC
TCTTGCAAGCGCTTGGATCCCTACTGCAGAATGGTTTCGCCAATTGAGGT
ATGCGGGTGTTGGTTGCTCGTTGTGGTTTTTATCGCTAATACTCCGGTAT
GTGGTACGGTGGGTGTTGCTTTCGGTCGTTGTTTCGCTGCTCGGTGTCGA
TAC
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