mRNA_P-littoralis_Contig61.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig61.108.1
Unique NamemRNA_P-littoralis_Contig61.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig61.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig61contigP-littoralis_Contig61:607251..607714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size464
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.836609-UTR-P-littoralis_Contig61:607250..6072751680791268.836609-UTR-P-littoralis_Contig61:607250..607275Pylaiella littoralis U1_48UTRP-littoralis_Contig61 607251..607275 +
1680791268.861299-UTR-P-littoralis_Contig61:607590..6077141680791268.861299-UTR-P-littoralis_Contig61:607590..607714Pylaiella littoralis U1_48UTRP-littoralis_Contig61 607591..607714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791268.8512805-CDS-P-littoralis_Contig61:607275..6075901680791268.8512805-CDS-P-littoralis_Contig61:607275..607590Pylaiella littoralis U1_48CDSP-littoralis_Contig61 607276..607590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig61.108.1prot_P-littoralis_Contig61.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig61 607276..607590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig61.108.1

>prot_P-littoralis_Contig61.108.1 ID=prot_P-littoralis_Contig61.108.1|Name=mRNA_P-littoralis_Contig61.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MHCISLIVAIDQMCSNAARVGICCCLPLSHVPDAKSNICRPRTMREGYRT
MPVGVLLDMCGEDVCVSRWCWFQFFSRLFLAGGTKSGIFFVGIAFFRPII
GLPS*
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mRNA from alignment at P-littoralis_Contig61:607251..607714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig61.108.1 ID=mRNA_P-littoralis_Contig61.108.1|Name=mRNA_P-littoralis_Contig61.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=464bp|location=Sequence derived from alignment at P-littoralis_Contig61:607251..607714+ (Pylaiella littoralis U1_48)
GGGATGGCTTGTGTTTCGTTCCATCATGCACTGTATTTCGTTGATTGTCG
CGATAGACCAGATGTGCAGCAACGCGGCCAGGGTAGGGATATGTTGTTGC
CTCCCACTCTCTCATGTGCCGGACGCCAAATCAAATATCTGTAGGCCACG
CACGATGAGAGAGGGATATCGAACGATGCCGGTGGGGGTATTGCTTGATA
TGTGCGGAGAGGATGTGTGTGTTTCTCGTTGGTGTTGGTTTCAGTTCTTC
TCTAGGCTATTTCTCGCGGGGGGGACAAAAAGTGGGATTTTTTTCGTCGG
TATCGCTTTCTTCCGTCCCATTATTGGTCTACCGAGCTGAACCGAGTAAC
AGCAGGATTTCGGCCACAATTTTGAGCGGAGGCACGTGTCCCACGTAAAC
GGAGGGGATTGTGTCATTTAAGCAACGCGGGGTGTCTCACTACATTTGTT
GTGCTATAATCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig61:607251..607714+

>mRNA_P-littoralis_Contig61.108.1 ID=mRNA_P-littoralis_Contig61.108.1|Name=mRNA_P-littoralis_Contig61.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig61:607251..607714+ (Pylaiella littoralis U1_48)
ATGCACTGTATTTCGTTGATTGTCGCGATAGACCAGATGTGCAGCAACGC
GGCCAGGGTAGGGATATGTTGTTGCCTCCCACTCTCTCATGTGCCGGACG
CCAAATCAAATATCTGTAGGCCACGCACGATGAGAGAGGGATATCGAACG
ATGCCGGTGGGGGTATTGCTTGATATGTGCGGAGAGGATGTGTGTGTTTC
TCGTTGGTGTTGGTTTCAGTTCTTCTCTAGGCTATTTCTCGCGGGGGGGA
CAAAAAGTGGGATTTTTTTCGTCGGTATCGCTTTCTTCCGTCCCATTATT
GGTCTACCGAGCTGA
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