mRNA_P-littoralis_Contig608.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig608.26.1
Unique NamemRNA_P-littoralis_Contig608.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.580e-32
Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = 2
Query:    2 AGAGMRSIAEHFVKPMKADEKKEH--HVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREV 478
            A A   S   +++ P K D+K+     +R+VI CC+++RP  M    GF+ F+G LSP YV+ T+   T +  LD L + V+T+++  L+     C  +G+ G F G Q DLT+  G E+ T TVS++ KG+T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  182 ASASSSSSLVNYMVP-KLDKKRREMADLRFVIWCCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEEL 341          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.690e-31
Identity = 62/146 (42.47%), Postives = 89/146 (60.96%), Query Frame = 2
Query:   35 FVKPMKADEKKEH-HVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWI 469
            FV P    +++E   +RYVI CC++ RP  M    GF+ FVG LSP YV  T+  +T   +LD L   V   ++  L+     C  +G+GG F G Q DLT+  G E+ T  VS++ KG+T++ R++L T+AFPG+HTA D+ PWI
Sbjct:    4 FVAPKMLQKQREFVDLRYVIWCCINPRPMQMRYDDGFKLFVGALSPQYVDTTMASTTFNKLLDTLHDRVEQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWI 149          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.410e-31
Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   35 FVKPMKADEKKEH-HVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWI 469
            FV P    +++E   +RY+I CC+++RP  M    GF+ FVG LSP YV  T+  +T   +LD L   ++  ++  L+     C  +G+GG F G Q DLT+  G E+ T  VS++ KG+T++ R++L T+AFPG+HTA D+ PWI
Sbjct:    4 FVAPKVLQKQREFADLRYMIWCCINLRPMQMRYDDGFKLFVGALSPQYVDTTMAATTFNKLLDTLHDRMKQAVVDDLRSVREECLGMGYGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWI 149          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.220e-30
Identity = 61/153 (39.87%), Postives = 91/153 (59.48%), Query Frame = 2
Query:   20 SIAEHFVKPMKADEKKEHHVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREV 478
            S+  + V  M    K     R+V+ CC+D+RP  +    GF+ F+G LSP YV  T+ KST    LD L   V ++++ +L+        +G+ GPF G Q DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI ++
Sbjct:  191 SLMNYMVPTMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKL 343          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.770e-30
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 2
Query:   20 SIAEHFVKPMKADEKKEHHVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIRE 475
            S+  + V  M    K     R+V+ CC+D+RP  +    GF+ F+G LSP YV  T+ KST    LD L   V ++++ +L+        +G+ GPF G Q DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI +
Sbjct: 1275 SLMNYMVPTMTKARKDAADRRFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.330e-30
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 2
Query:   23 IAEHFVKPMKADEKKEHHVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREV 478
            +A   V  M    ++   +R+VI  C+++RP  M    GF+ F+G LSP YV+ T+   T +  LD L   V T+++  L+     C  +G+ G F G Q DLT+  G E+ T TVS++ KG+T++ R+ L  +AFPGTHTA D+ PWI E+
Sbjct:  306 VAGDMVPKMDKKRREMADLRFVIWRCINLRPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYGKVNTSVVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVKKGSTDVTRVALACRAFPGTHTADDIRPWIEEL 457          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.200e-29
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   80 RYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIREV 478
            R+V+ CC+D+RP  +    GF+ F+G LSP YV  T+ KST    LD L   V ++++ +L+        +G+ GPF G Q DLT+  G E+ T TV+F+ KG+T+M R+ L  +AFPG+HTA D+ PWI ++
Sbjct:   16 RFVLWCCIDLRPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKL 148          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.750e-26
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   50 KADEKKEH--HVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTE-MERLTLTTKAFPGTHTASDVDPWI 469
            K D+K+     +RYVI CC+++RP  M    GF+ FVG LSP YV  T+  +T   +LDAL   V+  ++  L+        +G+GG F G   DLT+    E+ T TVS++ KG T+ + R+ L T+AFPG+HTA D+ PWI
Sbjct:    4 KMDKKQRDLADLRYVIWCCINLRPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWI 146          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.880e-24
Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = 2
Query:    2 AGAGMRSIAEHFV--KPMKADEKKEHHVRYVIMCCVDVRPFSMAERAGFQYFVGGLSPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDPWIRE 475
            AG+   SI ++     P+ A  +   + R+V+ C +++RP +M    G++  +G L P YV+ T+  +T  +IL  +  +    + T L+ +  SC +LG+ GPF G Q DLT+    E+ T +VS+I +  T + R+ L T+AFPG+HTA+D++PWI +
Sbjct:  163 AGSSTPSIKDYMQTGNPLLASTEAAANRRFVVWCAINMRPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEK 322          
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Match: UPI0019AE1995 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=UPI0019AE1995)

HSP 1 Score: 53.9 bits (128), Expect = 6.470e-6
Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  194 KSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFFGVQSDLTSTQGIEFCTLTVSFIPKG---NTEMERLTLTTKAFPGTHTASDVDPW 466
            +   + +L A    V+  ++ +L+    S   LG   PF  +Q D+T+T  + FCTL+VSF+ +    +  M+++ L T++FP  HTA+ V  W
Sbjct:   95 REPFDKLLIAEYVTVKQQIVNELQQQYQS---LGHSLPFCSLQLDMTTTNNVAFCTLSVSFVKEAADSSFTMQKVNLVTRSFPHEHTAAQVQSW 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig608.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.580e-3240.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE3.690e-3142.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE9.410e-3141.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.220e-3039.87Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE1.770e-3040.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE4.330e-3039.47Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JTB8_9PHAE1.200e-2942.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE5.750e-2641.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.880e-2435.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI0019AE19956.470e-631.91NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Microb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig608contigP-littoralis_Contig608:165483..165960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size478
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.2907054-UTR-P-littoralis_Contig608:165482..1654951680791266.2907054-UTR-P-littoralis_Contig608:165482..165495Pylaiella littoralis U1_48UTRP-littoralis_Contig608 165483..165495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.3027456-CDS-P-littoralis_Contig608:165495..1659601680791266.3027456-CDS-P-littoralis_Contig608:165495..165960Pylaiella littoralis U1_48CDSP-littoralis_Contig608 165496..165960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig608.26.1prot_P-littoralis_Contig608.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig608 165496..165960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig608.26.1

>prot_P-littoralis_Contig608.26.1 ID=prot_P-littoralis_Contig608.26.1|Name=mRNA_P-littoralis_Contig608.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MRSIAEHFVKPMKADEKKEHHVRYVIMCCVDVRPFSMAERAGFQYFVGGL
SPSYVQETIHKSTMENILDALAADVRTNLITKLKDYIVSCKELGWGGPFF
GVQSDLTSTQGIEFCTLTVSFIPKGNTEMERLTLTTKAFPGTHTASDVDP
WIREV
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mRNA from alignment at P-littoralis_Contig608:165483..165960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig608.26.1 ID=mRNA_P-littoralis_Contig608.26.1|Name=mRNA_P-littoralis_Contig608.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=478bp|location=Sequence derived from alignment at P-littoralis_Contig608:165483..165960+ (Pylaiella littoralis U1_48)
AGCTGGAGCGGGGATGCGCTCGATCGCCGAACACTTCGTCAAGCCCATGA AAGCCGATGAGAAGAAAGAACACCACGTTCGATACGTCATCATGTGCTGC GTCGACGTGCGGCCGTTCTCCATGGCTGAGCGGGCCGGGTTCCAGTACTT CGTCGGCGGCTTGAGCCCGTCGTACGTACAGGAGACGATACACAAGAGCA CGATGGAAAACATTCTCGATGCCTTGGCCGCCGATGTTCGCACCAACCTC ATCACGAAGCTGAAGGACTACATAGTTTCCTGCAAGGAACTCGGGTGGGG CGGGCCATTCTTTGGCGTGCAGTCGGACCTGACCAGCACGCAAGGCATCG AGTTCTGCACTCTCACGGTCTCCTTCATTCCGAAGGGTAACACGGAGATG GAGCGACTGACGCTAACGACAAAGGCGTTCCCGGGTACGCACACGGCAAG CGATGTGGACCCGTGGATCCGCGAGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig608:165483..165960+

>mRNA_P-littoralis_Contig608.26.1 ID=mRNA_P-littoralis_Contig608.26.1|Name=mRNA_P-littoralis_Contig608.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig608:165483..165960+ (Pylaiella littoralis U1_48)
ATGCGCTCGATCGCCGAACACTTCGTCAAGCCCATGAAAGCCGATGAGAA
GAAAGAACACCACGTTCGATACGTCATCATGTGCTGCGTCGACGTGCGGC
CGTTCTCCATGGCTGAGCGGGCCGGGTTCCAGTACTTCGTCGGCGGCTTG
AGCCCGTCGTACGTACAGGAGACGATACACAAGAGCACGATGGAAAACAT
TCTCGATGCCTTGGCCGCCGATGTTCGCACCAACCTCATCACGAAGCTGA
AGGACTACATAGTTTCCTGCAAGGAACTCGGGTGGGGCGGGCCATTCTTT
GGCGTGCAGTCGGACCTGACCAGCACGCAAGGCATCGAGTTCTGCACTCT
CACGGTCTCCTTCATTCCGAAGGGTAACACGGAGATGGAGCGACTGACGC
TAACGACAAAGGCGTTCCCGGGTACGCACACGGCAAGCGATGTGGACCCG
TGGATCCGCGAGGTG
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