mRNA_P-littoralis_Contig608.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig608.23.1
Unique NamemRNA_P-littoralis_Contig608.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig608.23.1 vs. uniprot
Match: A0A6H5KB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB89_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.050e-17
Identity = 55/138 (39.86%), Postives = 74/138 (53.62%), Query Frame = 1 
Query:    1 MPPNYVHKYSLLFAVLGRPAGPGKQHHQLSAALSSGPTAAPAGVGGEKGSRLK---------SPRSIKDMKKEGEKGAGVPVSRGTKRKEEVVDRRQAKREKEREHMTKTSARVVDLLENPRESEADVVFIGLATELR 387
            MP NYVHKYSL+FA+ GRPAG   ++H LS    SGP                         SP SI+D+KK+G  GAG+P SR  ++K+        KREK  +   + +A ++ LL+NP ESEAD V I    E++
Sbjct:    1 MPANYVHKYSLIFALPGRPAGKQHEYHCLSLESGSGPDGEXXXXXXXXXXXXXXXXXXXXXXSPASIRDLKKQGATGAGIPASRTERKKDXXXXXXXVKREKAAQETKEFNAELLGLLKNPVESEADRVIIDFVREMK 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig608.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB89_9PHAE3.050e-1739.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig608contigP-littoralis_Contig608:156096..156485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791266.2124667-CDS-P-littoralis_Contig608:156095..1564851680791266.2124667-CDS-P-littoralis_Contig608:156095..156485Pylaiella littoralis U1_48CDSP-littoralis_Contig608 156096..156485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig608.23.1prot_P-littoralis_Contig608.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig608 156096..156485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig608.23.1

>prot_P-littoralis_Contig608.23.1 ID=prot_P-littoralis_Contig608.23.1|Name=mRNA_P-littoralis_Contig608.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MPPNYVHKYSLLFAVLGRPAGPGKQHHQLSAALSSGPTAAPAGVGGEKGS
RLKSPRSIKDMKKEGEKGAGVPVSRGTKRKEEVVDRRQAKREKEREHMTK
TSARVVDLLENPRESEADVVFIGLATELRA
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mRNA from alignment at P-littoralis_Contig608:156096..156485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig608.23.1 ID=mRNA_P-littoralis_Contig608.23.1|Name=mRNA_P-littoralis_Contig608.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig608:156096..156485- (Pylaiella littoralis U1_48)
ATGCCACCGAACTACGTGCACAAGTACAGCCTCCTCTTCGCCGTGTTGGG
GAGGCCGGCGGGGCCCGGGAAACAGCACCACCAGCTGTCTGCCGCACTTT
CTTCTGGCCCAACAGCCGCACCCGCGGGGGTTGGTGGTGAAAAGGGGAGC
CGCCTTAAGTCCCCTCGATCGATCAAGGACATGAAGAAGGAGGGCGAGAA
GGGAGCGGGAGTGCCTGTTAGCAGGGGCACGAAGAGGAAGGAAGAAGTGG
TCGACAGGAGGCAGGCAAAGCGGGAGAAGGAGCGCGAACATATGACCAAA
ACCAGCGCGCGTGTTGTCGACTTGCTAGAGAACCCTCGTGAAAGCGAGGC
CGATGTCGTCTTCATTGGCCTCGCGACGGAGTTGAGGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig608:156096..156485-

>mRNA_P-littoralis_Contig608.23.1 ID=mRNA_P-littoralis_Contig608.23.1|Name=mRNA_P-littoralis_Contig608.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig608:156096..156485- (Pylaiella littoralis U1_48)
ATGCCACCGAACTACGTGCACAAGTACAGCCTCCTCTTCGCCGTGTTGGG
GAGGCCGGCGGGGCCCGGGAAACAGCACCACCAGCTGTCTGCCGCACTTT
CTTCTGGCCCAACAGCCGCACCCGCGGGGGTTGGTGGTGAAAAGGGGAGC
CGCCTTAAGTCCCCTCGATCGATCAAGGACATGAAGAAGGAGGGCGAGAA
GGGAGCGGGAGTGCCTGTTAGCAGGGGCACGAAGAGGAAGGAAGAAGTGG
TCGACAGGAGGCAGGCAAAGCGGGAGAAGGAGCGCGAACATATGACCAAA
ACCAGCGCGCGTGTTGTCGACTTGCTAGAGAACCCTCGTGAAAGCGAGGC
CGATGTCGTCTTCATTGGCCTCGCGACGGAGTTGAGGGCG
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