mRNA_P-littoralis_Contig606.36.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig606.36.2
Unique NamemRNA_P-littoralis_Contig606.36.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig606.36.2 vs. uniprot
Match: D7FHX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX9_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.950e-34
Identity = 79/140 (56.43%), Postives = 99/140 (70.71%), Query Frame = 3 
Query:  285 MHEEGRNDDFVTTDTLEEKVHELGVADAKEEE------AGVLEKVKAAFRTVTGGVGRAWSTLGEWRDQETPLRKMFKTARLELDDAAATVRERTIDRKEEMRKRMEKMAEERKKRFQEFDKSGGEKEKTIQKRCLWSVC 686
            M E+G+ D  V  +TLEEKV EL V DAKEE       AGVL+ +K  F+TVTGGVG  W TLGEW+DQ TPLRKMFKTARL+++D AA  RER   R+ +MR+ M+KMAEER+ RF+EFDKSG    + + +R   +VC
Sbjct:    1 MTEKGKEDGSVA-ETLEEKVQEL-VTDAKEETGGSTSAAGVLDTLKGGFQTVTGGVGMVWQTLGEWKDQGTPLRKMFKTARLDIEDTAAKARERAACRQTKMRENMQKMAEERQARFKEFDKSGARSSRVMNRRRSLTVC 138
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BLAST of mRNA_P-littoralis_Contig606.36.2 vs. uniprot
Match: A0A6H5JKU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.580e-27
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 3 
Query:  285 MHEEGRNDDFVTTDTLEEKVHELGVADAKEEEAG------VLEKVKAAFRTVTGGVGRAWSTLGEWRDQETPLRKMFKTARLELDDAAATVRERTIDRKEEMRKRMEKMAEERKKRFQEFDKSG 638
            M ++G+ D  V  +TLEEKV EL   DAKEE +G      VL+ +K  F+T+TGG+G A  TLGEW+DQ TPLR+MFKTARL+L+DA A  RE+   R+ +MR+ ++KMAEER+ RF+EFDKSG
Sbjct:    1 MAKKGKEDGSVA-ETLEEKVQELAT-DAKEETSGSTSSPGVLDTLKGGFQTITGGMGMAGQTLGEWKDQGTPLRRMFKTARLDLEDATAKAREKAACRQTKMRENLQKMAEERQARFKEFDKSG 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.36.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX9_ECTSI3.950e-3456.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKU3_9PHAE5.580e-2755.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig606contigP-littoralis_Contig606:164960..168694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1446
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_006300.1
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.4827926-UTR-P-littoralis_Contig606:164959..1654551680791264.4827926-UTR-P-littoralis_Contig606:164959..165455Pylaiella littoralis U1_48UTRP-littoralis_Contig606 164960..165455 -
1680791264.5371299-UTR-P-littoralis_Contig606:168410..1686941680791264.5371299-UTR-P-littoralis_Contig606:168410..168694Pylaiella littoralis U1_48UTRP-littoralis_Contig606 168411..168694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791264.5047038-CDS-P-littoralis_Contig606:165455..1659311680791264.5047038-CDS-P-littoralis_Contig606:165455..165931Pylaiella littoralis U1_48CDSP-littoralis_Contig606 165456..165931 -
1680791264.5218-CDS-P-littoralis_Contig606:168220..1684101680791264.5218-CDS-P-littoralis_Contig606:168220..168410Pylaiella littoralis U1_48CDSP-littoralis_Contig606 168221..168410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig606.36.2prot_P-littoralis_Contig606.36.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig606 165456..168410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig606.36.2

>prot_P-littoralis_Contig606.36.2 ID=prot_P-littoralis_Contig606.36.2|Name=mRNA_P-littoralis_Contig606.36.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=222bp
MHEEGRNDDFVTTDTLEEKVHELGVADAKEEEAGVLEKVKAAFRTVTGGV
GRAWSTLGEWRDQETPLRKMFKTARLELDDAAATVRERTIDRKEEMRKRM
EKMAEERKKRFQEFDKSGGEKEKTIQKRCLWSVCRNCVCGGGGGGGGSWL
VHKYFQADGTGKTVLTQNSQFVYVGWQATESFTLSRVLEHALCTRITNSS
TLYTLEMWAIFATLINSFRFV*
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mRNA from alignment at P-littoralis_Contig606:164960..168694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig606.36.2 ID=mRNA_P-littoralis_Contig606.36.2|Name=mRNA_P-littoralis_Contig606.36.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3735bp|location=Sequence derived from alignment at P-littoralis_Contig606:164960..168694- (Pylaiella littoralis U1_48)
CGGCACTATACCGGGCATCTGGCACTATTCAACCAGCACTAAAAGGGTCC
CTCGACTGTATGTCGAATAAACCTACACACACGTGTTATAATAATTATCA
TCTCCCATGATATGTAGTGGAACGTGGATCATTACAAGTCATACATGTAC
CTGGTGGTTGTACTTTTCATCGAAAAGCCCCCTGGCGGCGAAGCCGAGAC
TGTGTGACTGTGGGTGGGTTGCAGTTGAGCATCGGTTACCCTACACAGAC
AGAGAGAGACAGACGTCGCTGTGTGCAGTACAGTATGCACGAGGAAGGGA
GAAATGATGATTTCGTCACCACTGACACACTGGAGGAAAAGGTGCACGAG
CTAGGAGTCGCGGACGCGAAAGAGGAGGAGGCCGGCGTTCTGGAGAAAGT
GAAAGCGGCCTTCAGGACAGTCACGGGCGGTGTGGGGAGGGCTTGGTCCA
CTTTGGGCGAGTGGAGGGATCAAGGTGTGTTTGTGTTTGTGTTTGTGTTT
GTGTGTGCGTGATTGTCTGTCGGTGTGGTTTTGTGTCCGTTGATTTGTGT
GCTGTTTGATTGATCTCTCCGTGCGAAGCAACCCGAAATGCGATGTGAGT
TTGTAGAACATTGGAGCGCTCCCACTTCTTGGTTGGCCCGTCGGCCCGTC
GCCCCGCCTTCGCTTTCCGGAAAGTGGCCTCATCATACCACCTGCTCTAC
ACACGTAATCTCCTGGATGGTGACACATAGAACGATACTGCTAACGAGAA
CGAGAGAATGGATTTTGAGCCAAGTCTAAGGCCCTCTTTAAGGCCCTGTG
TTAACGACAATCAGAAAATCAAAATTGAAAAATCAAAATAGCAAAATCAA
AGTTTGATTTTACGAAAAACACTGCGAGCCATATTACCGGTAACGGACCA
GCTTGGTAGAGGCCTGTAAACGCCGCCGAGATCCAAAACCTCTGATTGAT
TATGATGTCACTCACCATCGATCGGCACTGCTGTAAACATAACAACAGCA
GCAGCAGTACAGATACATACATGTATCAGAGCAGCACTGCACGCTGATGC
TACGTCGCTGAGAGACACCGCGTTGTTTGTGTGTCTGTCGGTTTGTTTGT
GTGTGTTGCCTCATCATCATGGACTCGAGACTGCTGTACGCGTCTGGCTG
TCTGCTGGTTGTTGTTGTTTGGCTGTCGTTGTCCTGCTCTAGGTGTTGTC
TGGTTGGTGCCTCATCATGCGAGTCTGTCTGTCTTTCTTCTACTCTAGGT
GTGGTGCTGTTTTTTGACACGCCTGGTGCGACGGCACACCTCTCTCTCTC
TGTGTGTTGTGTGGGTTGCGCCGGCGTGCCCTGTGCCTCTGTCTGCTTTT
GTCTGTGGTGTGGTGCGCGAGCCACATTGTTCAGAAAGCCTTCGATCGGG
TTAAGACCCCCAATTTTGATTTCGATTTTCTGGCAATTAAGTCTTTTTGG
ACTTCTTTGGTCTGCCGGTGATTTCCAAGAAATCAAAATTGTCGTCGGTA
GGTCTCGAGAGCCTCGACCAATCAGAGACCAATTTTGATTTTGATTCTTT
CCAATTTTGATTTCCTGATTGTCGTCAATACAGGGCCTAAACGCTGTTCA
GGAAATCAAAATTGGAAATAATCAAAAATAATCAAAAATAATCAAAATCA
AATTTGGTCTGATTGGTCGAGGCTGTCAAGACCTACCGACGACAATTTTG
ATTTCTTTGACATCACCGGCAGACCAAACAAGTCCAAAAAGACTTAATTG
CCAGAAAATCAAAATCAAAATTGGGGTCTTAACCCGATCGAAGGCTTTCT
GAACGATGTGGCTCGCGCACCACACCACAGACAAGCAGACAGAGGCACAG
GGCACGCCGACGCAACTCACAGAACACAGAGAGAGAGAGGTGTGCCGTCG
CACCAGGCATGTCAAAACCAGCACCACACCTAGAGCAGAACAAAGACAGA
CAGACTTGCATGATGAGCACCTAGAGCAGGACTACGACAGCCAAATAACA
ACAGCAGACAGACAGACGCGTGCAGCAGTCTGGAGTCCATGACGAGCCAA
CACACACAAACAAACCGACAAGACACACAAACAAACGCGCGGTGTCTCTC
AGCGACGTAGCATCAGCGTGTTGCAGTGCTGCTCTGAACATGTATCTGTA
CTGCTGCTGCTGTTGTTGTTATGTTTACAGCAGTGCCGATCGATAGTGAC
GTCATCATCAATCAGAGGTTTTGGGTCTCGGCGGCGTTTACAGGCCTCTA
CCAAGCTGGTCCGTTAATATGGCTCGCAGTGTTTTTCGTAAAATCAAACT
TTGTGATTGCTATTTTGATTTTTCAATTTTGGTTTCCTGATTGTCGTCAA
CACAGGGCCTAAGGGATGGGTTTCTGGCGTACGCATGACGGTAGGGTGGA
ACGTGCATCTGCTGCACATTAGTACTGCCGTTACGAGTTGTAGGGTTTTG
CTGACTCTTTTTCTCGCTGGGGAAAAAAAAGAGCGCACAGCAGTCACACC
CCCTGCACCCCACACACGAGCACTACCGCAGTGAAGCAGCAATAGTGTAC
AAAACAGCAGTAGCAGTACAGCAGTACGTGTATGCAACTTCGTCATGATA
CGTGCTCTCGTTCCTGGAGAAAGCAGTTTTTTTGTGTTTGCTGACTTTCA
TTGCGTTGCGTTGCGTTCGCGTTCGTTGCCTTGCCTGCTTCGCCTGATAC
ACTGCGATCCTTGTCGTATTTTGCTTCACATGTTTATCTTGAAAAAAAAA
TGATGGAATCAAGAAACGCCATTGCGAAAAATGTTCAAGACTGCGCGCTT
GGAGTTGGACGATGCCGCGGCAACGGTCCGCGAGAGGACCATCGACAGGA
AGGAAGAGATGAGGAAGCGCATGGAGAAGATGGCCGAGGAGAGGAAGAAG
CGGTTCCAGGAGTTCGACAAGTCGGGAGGTGAGAAAGAAAAGACAATCCA
GAAACGATGTTTATGGTCTGTCTGTCGTAATTGTGTTTGTGGCGGCGGCG
GCGGCGGCGGCGGCAGTTGGCTGGTCCACAAGTACTTTCAAGCCGACGGG
ACGGGGAAAACCGTTTTGACACAAAACTCGCAGTTTGTTTATGTGGGGTG
GCAAGCGACAGAAAGCTTCACACTCTCTCGTGTTTTGGAACACGCGTTGT
GCACCAGAATCACGAACAGCAGTACTCTGTACACCTTGGAAATGTGGGCG
ATTTTTGCGACGCTCATCAACTCATTCCGCTTCGTGTAGTAGTTGACGAG
GTGGCGGTCCACCAGAACATTGGCCGCTTATTAGCCCGAGTGACTCTGAT
ACCTTTGCCATGTACTTTTCTGCTCGCAGGCAGCCATCAGACTTCGTATG
CTGCACATCCCTATCCGCCAGTGTAGAGGGGAGGATCGTCTTGTTGGGAC
GGTCAAGCGTGCTCGTGGTAGCACTGCTGCGTGTTTCGAGAGCACGGTTG
CGGAAGCACCAAGGGCACAACTGACGACAACCACCACGCTGTGTGTAGTG
CGCCCACTGCTGTTGTTGCCAAACCTGACGCCTCTAGAAGTCTTTGGCGG
GATCTACGTTTTCCGTCCCGACGGAGTGATATTCCTTGCACGTGTCGCAA
AGCTGGGAGGGGAAGTCTTCACGATTTATGCTGCCGTTTGCCCCCGTTTT
GTTTTTTTTTGTTTCTGCAAGAAAGCGCGAACAGGATCAAACTGACTGCG
GTGCACGAGCACTTCCCTGGATCGTTTTTCGTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig606:164960..168694-

>mRNA_P-littoralis_Contig606.36.2 ID=mRNA_P-littoralis_Contig606.36.2|Name=mRNA_P-littoralis_Contig606.36.2|organism=Pylaiella littoralis U1_48|type=CDS|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig606:164960..168694- (Pylaiella littoralis U1_48)
ATGCACGAGGAAGGGAGAAATGATGATTTCGTCACCACTGACACACTGGA
GGAAAAGGTGCACGAGCTAGGAGTCGCGGACGCGAAAGAGGAGGAGGCCG
GCGTTCTGGAGAAAGTGAAAGCGGCCTTCAGGACAGTCACGGGCGGTGTG
GGGAGGGCTTGGTCCACTTTGGGCGAGTGGAGGGATCAAGAAACGCCATT
GCGAAAAATGTTCAAGACTGCGCGCTTGGAGTTGGACGATGCCGCGGCAA
CGGTCCGCGAGAGGACCATCGACAGGAAGGAAGAGATGAGGAAGCGCATG
GAGAAGATGGCCGAGGAGAGGAAGAAGCGGTTCCAGGAGTTCGACAAGTC
GGGAGGTGAGAAAGAAAAGACAATCCAGAAACGATGTTTATGGTCTGTCT
GTCGTAATTGTGTTTGTGGCGGCGGCGGCGGCGGCGGCGGCAGTTGGCTG
GTCCACAAGTACTTTCAAGCCGACGGGACGGGGAAAACCGTTTTGACACA
AAACTCGCAGTTTGTTTATGTGGGGTGGCAAGCGACAGAAAGCTTCACAC
TCTCTCGTGTTTTGGAACACGCGTTGTGCACCAGAATCACGAACAGCAGT
ACTCTGTACACCTTGGAAATGTGGGCGATTTTTGCGACGCTCATCAACTC
ATTCCGCTTCGTGTAG
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