mRNA_P-littoralis_Contig606.23.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig606.23.3 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI) HSP 1 Score: 345 bits (885), Expect = 2.790e-110 Identity = 228/373 (61.13%), Postives = 268/373 (71.85%), Query Frame = 3
Query: 258 QCDDLELYFVDVAADSEIDLSGVLTVDCPENADGEVIAEVLIESGNTLTIKSHEP-VRFVNVRFTVEAGASLVFDMPTIEIGPNSGDFDNPRGFVFDLYEGSTVTFMGEFLGSEVENVRSMFYSTGSIEFKGDALFSNNGNVFSSNLXXXXXXXXXXXXXXFFLALVNEGSDAFVRFSKTATFEDNAGSFDGSRACAVRNNGGAVIFRDTTVFSDHSCDGGRAVFNEGKMRFYGKVQFNEN-----SGGGLWN------SDGGDLEFKRAAQFNDNIAEIGGGFLVXXXXXXXXXXXXXXXXXXXXXXXAFAVTGDGSVTFEKPAVVRVRDNNALVGVQSVET-TGCSLAFVE-DTATLSGFDFDDVCDEVTV 1334
+CDD++ YF DV++ +EIDL ++ VDCP N D E + + IESG TLT+KS E VRFVN+RF VE GASL+FDMP +GPNSG + FVFD+ EG ++TF G+F S+V NVRS+FY+ GSIEFK D+LF+NNGNVF SN XXXXXXXXXXXXXX N+G D+FVRFSKTATF DNAG FDG+ CA+ +NGG IFRD VFSDH CD G AV N GKMRFYGK F++N +GGG+ N GDL FK A QFN N AE GGG V XXXXXXXXXXXXXXXXXXXXX VTGDGSVTFEKP VVR+ DN L + + TGCSLA+VE + T+ GFDFDD+C EVTV
Sbjct: 25 ECDDIDAYFGDVSSVTEIDLGTIIRVDCPSNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNRGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAI-DNGGTAIFRDDAVFSDHDCDEGAAVSNTGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTAEYGGGIAVTGXXXXXXXXXXXXXXXXXXXXXXXXVTGDGSVTFEKPEVVRISDNTLLANEYNPDPITGCSLAYVEGNETTVVGFDFDDICQEVTV 396
BLAST of mRNA_P-littoralis_Contig606.23.3 vs. uniprot
Match: A0A6H5KB90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB90_9PHAE) HSP 1 Score: 174 bits (441), Expect = 2.530e-47 Identity = 105/176 (59.66%), Postives = 135/176 (76.70%), Query Frame = 3
Query: 258 QCDDLELYFVDVAADSEIDLSGVLTVDCPENADGEVIAEVLIESGNTLTIKSHEP-VRFVNVRFTVEAGASLVFDMPTIEIGPNSG-DFDNPRGFVFDLYEGSTVTFMGEFLGSEVENVRSMFYSTGSIEFKGDALFSNNGNVFSSNLXXXXXXXXXXXXXXFFLALVNEGSDAFV 779
+CDD++ YF DV++ +EIDL ++ VDCP DGE + + IESG TL +KS E VRFVN+RF VE GASL+FDMP +GPNS D ++ FVFD+ EG ++TF G+F S+V NVRS+FY+ GSIEFK D+LF+NNGNVF +N XXXXXXXXXXXXXX +LA+VN+G D+FV
Sbjct: 25 ECDDIDAYFGDVSSVTEIDLGTIIRVDCPSTDDGEELPYITIESGKTLAVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSVVDPESASDFVFDVAEGGSLTFNGKFRSSQVFNVRSVFYNRGSIEFKDDSLFNNNGNVFRNNEXXXXXXXXXXXXXXXYLAIVNDGEDSFV 200 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.23.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig606.23.3 >prot_P-littoralis_Contig606.23.3 ID=prot_P-littoralis_Contig606.23.3|Name=mRNA_P-littoralis_Contig606.23.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=421bp MRKPAILCAFLAIALLSGVSCQEDNPDCNNLGLLDERTNGFEDFCKTQCDback to top mRNA from alignment at P-littoralis_Contig606:107340..128123- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig606.23.3 ID=mRNA_P-littoralis_Contig606.23.3|Name=mRNA_P-littoralis_Contig606.23.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=20784bp|location=Sequence derived from alignment at P-littoralis_Contig606:107340..128123- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig606:107340..128123- >mRNA_P-littoralis_Contig606.23.3 ID=mRNA_P-littoralis_Contig606.23.3|Name=mRNA_P-littoralis_Contig606.23.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1263bp|location=Sequence derived from alignment at P-littoralis_Contig606:107340..128123- (Pylaiella littoralis U1_48)back to top |