mRNA_P-littoralis_Contig606.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig606.22.1
Unique NamemRNA_P-littoralis_Contig606.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig606contigP-littoralis_Contig606:106375..106995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791262.7171755-UTR-P-littoralis_Contig606:106374..1064581680791262.7171755-UTR-P-littoralis_Contig606:106374..106458Pylaiella littoralis U1_48UTRP-littoralis_Contig606 106375..106458 -
1680791262.7371142-UTR-P-littoralis_Contig606:106968..1069951680791262.7371142-UTR-P-littoralis_Contig606:106968..106995Pylaiella littoralis U1_48UTRP-littoralis_Contig606 106969..106995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791262.7280931-CDS-P-littoralis_Contig606:106458..1069681680791262.7280931-CDS-P-littoralis_Contig606:106458..106968Pylaiella littoralis U1_48CDSP-littoralis_Contig606 106459..106968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig606.22.1prot_P-littoralis_Contig606.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig606 106459..106968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig606.22.1

>prot_P-littoralis_Contig606.22.1 ID=prot_P-littoralis_Contig606.22.1|Name=mRNA_P-littoralis_Contig606.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MEGGATECFHAVSLEYSLPRSRCRGVHFDSRGWYCTRCSLCWTVFKHVDS
RHHLIRERAQQQEHGGGLRGMVHVGFDLQRPGLFPDQTRNPKMIFVRTPR
GEDVTNNCRCFRTCYVFINICRSYLIGARGLGGALLCLMPDRFGDDGECA
RSFRSAVCFRSYLVEERLY*
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mRNA from alignment at P-littoralis_Contig606:106375..106995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig606.22.1 ID=mRNA_P-littoralis_Contig606.22.1|Name=mRNA_P-littoralis_Contig606.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig606:106375..106995- (Pylaiella littoralis U1_48)
TGGTAGTACGTGGCCTTGTCTGGCGGGATGGAAGGGGGGGCTACGGAATG
TTTCCATGCGGTATCTCTGGAGTATTCTCTTCCCCGATCGCGGTGTCGCG
GGGTGCACTTTGATTCACGAGGATGGTACTGTACGCGCTGCTCACTTTGT
TGGACAGTATTTAAGCACGTCGACAGCCGCCACCACTTAATCCGGGAGCG
TGCACAGCAGCAGGAGCACGGGGGGGGACTTAGAGGTATGGTTCATGTAG
GATTCGACCTACAGCGACCGGGTTTGTTTCCTGACCAAACCCGCAACCCG
AAGATGATTTTCGTGCGCACGCCGCGCGGTGAGGACGTGACGAATAATTG
TCGTTGTTTCCGTACTTGTTATGTATTTATAAATATATGTAGATCATATC
TCATTGGGGCTCGTGGTCTCGGTGGCGCTCTACTCTGTCTGATGCCCGAT
CGTTTCGGTGATGACGGTGAGTGTGCTCGTAGCTTCCGTTCTGCTGTTTG
CTTCCGTTCTTACCTTGTCGAAGAGCGGCTTTATTAAGCTGTTACTTCGT
ATTACTGAAGCACTTTTTTTTCAGCAAAGTAAGTACTTTTTTTTCAGCAA
AGACATACCATATTGTGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig606:106375..106995-

>mRNA_P-littoralis_Contig606.22.1 ID=mRNA_P-littoralis_Contig606.22.1|Name=mRNA_P-littoralis_Contig606.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig606:106375..106995- (Pylaiella littoralis U1_48)
ATGGAAGGGGGGGCTACGGAATGTTTCCATGCGGTATCTCTGGAGTATTC
TCTTCCCCGATCGCGGTGTCGCGGGGTGCACTTTGATTCACGAGGATGGT
ACTGTACGCGCTGCTCACTTTGTTGGACAGTATTTAAGCACGTCGACAGC
CGCCACCACTTAATCCGGGAGCGTGCACAGCAGCAGGAGCACGGGGGGGG
ACTTAGAGGTATGGTTCATGTAGGATTCGACCTACAGCGACCGGGTTTGT
TTCCTGACCAAACCCGCAACCCGAAGATGATTTTCGTGCGCACGCCGCGC
GGTGAGGACGTGACGAATAATTGTCGTTGTTTCCGTACTTGTTATGTATT
TATAAATATATGTAGATCATATCTCATTGGGGCTCGTGGTCTCGGTGGCG
CTCTACTCTGTCTGATGCCCGATCGTTTCGGTGATGACGGTGAGTGTGCT
CGTAGCTTCCGTTCTGCTGTTTGCTTCCGTTCTTACCTTGTCGAAGAGCG
GCTTTATTAA
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