mRNA_P-littoralis_Contig606.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig606.20.1
Unique NamemRNA_P-littoralis_Contig606.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig606contigP-littoralis_Contig606:101089..104365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size484
Hectar predicted targeting categoryother localisation
Exons3
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791262.6448648-CDS-P-littoralis_Contig606:101090..1013241680791262.6448648-CDS-P-littoralis_Contig606:101090..101324Pylaiella littoralis U1_48CDSP-littoralis_Contig606 101091..101324 -
1680791262.6572666-CDS-P-littoralis_Contig606:103524..1035661680791262.6572666-CDS-P-littoralis_Contig606:103524..103566Pylaiella littoralis U1_48CDSP-littoralis_Contig606 103525..103566 -
1680791262.6674614-CDS-P-littoralis_Contig606:104161..1043651680791262.6674614-CDS-P-littoralis_Contig606:104161..104365Pylaiella littoralis U1_48CDSP-littoralis_Contig606 104162..104365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig606.20.1prot_P-littoralis_Contig606.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig606 101091..104365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig606.20.1

>prot_P-littoralis_Contig606.20.1 ID=prot_P-littoralis_Contig606.20.1|Name=mRNA_P-littoralis_Contig606.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
RSLARDDSCGETARGCSRNSQSRRLIRDDRCWGRVRERIRIFPASRRRRL
GWTRRSRRWRLGWTRRSRLCTGLEEAEFEDISTEQLRVHRRGAAAATPEN
RMIASKTREHREGRKHRESRRTRGTPAQHHATGVTRPKTHTKNLHRGRSQ
SAETQNEAPR
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mRNA from alignment at P-littoralis_Contig606:101089..104365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig606.20.1 ID=mRNA_P-littoralis_Contig606.20.1|Name=mRNA_P-littoralis_Contig606.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3277bp|location=Sequence derived from alignment at P-littoralis_Contig606:101089..104365- (Pylaiella littoralis U1_48)
CGAAGTCTCGCCAGAGATGACAGCTGTGGTGAAACGGCGCGGGGGTGCAG
CCGAAATTCCCAGAGTCGACGTCTCATCCGAGATGACCGCTGTTGGGGAA
GGGTGCGTGAACGCATCCGAATTTTCCCCGCATCCCGGAGGCGGAGACTC
GGATGGACAAGGAGATCCCGAAGGTGGAGACTCGGATGGACAAGAAGATC
CCGAAGGTGGAGACTCGGATGGACAAGAAGATCCCGAGGCTTCGGGTGAG
GTGCTGAGCTCACGGAGTACTTTAAGCACGGAGTCAAGCATTGGTGTGTT
TGATCTCTCGAGCCTGTGCTCGAGGGATAGTGTGTGCGACAAAGCTGCAG
TAGTTTCATCCATTTCAGATCGTACAGCAGTAGTTTCGGAATTTTCTAAC
AGCAGTACCACAGTACAGTAGTAGAGGCTGCATCGACCGATACAGGTACC
TGATCAGATACAGCGGCAGAGGCCATTACTGAAACAGCCGGATGTACTGA
ACTGGTCTGTACATCAGGGCCTGATTCTACAGCAATTGGAGGCGCTACCG
CAGGAGGCCGTGCACAACTCATGGCTGGGGCTTGCGAAGCCGTGGCCATG
GTTTGAGTGTGACTGCCTGTGTGTGTGTAACTCAACGGAACTCATCATGT
GGTCGGCTGCTGCAGCAGTTTCATGCTGAAGCGACGCTGCGTTTTCAGCT
TCGAGCGAGAGCACACTGTCAAGCTCACTACCGTGACCAGATGAAGCAGC
AAGCGATACCGTGGCACTCGCCGGGCTATCACTGCTGTTGCTAGTACGGT
TGTGCACAGGGCTGGAGGAAGCTGAATTCGAAGACATCTCGGTACGTACT
CGGATGTTCGATCACGAAACAAAAATATGAAACTACGAAGACAGCGGACC
AGTTTACACTGGAAATACTAAGAACAAGATGTTTCAGCAGTGGCTGCACT
GAAACCAGTACGAACTGAAAGCAAAAGGCGGGGGGGGGGGAGCGGTTGAA
GGAGCTCAGGAACAGAGAAGAGATACTAAGACGACAGACAGCTCACCGTG
GACGTTGCTTGCCGTGGCGCCAAATGTGATGAGATTCTCTCGTGTCGAAC
GTGGTGTGATCACTGCAAACGCAAGCTGAACTGATGTGTCATTTCTCTCT
TCTTGATTGTTTCTAAGCTCCCTCTCGCTTGCTCGTCCAGATGGGGTTGT
GAGCGAGAGGGGGCGTGAAGAGGTTGCGTGCGGGGGCTCGCTTCCGCTCG
CACGGGTCAACTTCTACTTTTGGGAACTGCCAACAAAGTACCACAGAACT
GCATACGTACACCTGTCAACCTGGCTGTACCACTTCAACTGCTGCCCGTA
ATTTCGTTCTCCTACGTCATTCCACTACAGATCCTCTCTGGTACTTCCCA
TATCTGTACGAGATATGACCTGTTCGTTCCATCCTCACAGGATCTGATAC
GCGCCTTATATCTACGGCGTAATGCGCTCTTAGAGCTATATTGGGGAACC
GAACCTGATCTCTTTCAGAAAGGAAACGTATTTGCATACCGTACTATTCT
CTCTGTGCATTCAGTTTTGGGAATCGGAACATTCAATTAGGGGATGTTCC
GTTGAATCTTACCTGACAGTGCCAGATCTACTTGATATACCCGCTCTTGC
TTGGTATCTATCTCTTGAATGGTGCAATACCATGACAATATGCGCCATTG
TTCGTATTCGGTGGGGGGGGGGGGGGGGGCGTCGTTTACCAACTACTACG
AAGCATTATAAACACTTTCGTATACATTTCACAATATTTTTCTTCTCTCT
CTGGCAGCCCGTTTCTGCTGTGGTGAGAGATGGTGGTGTTTTGTTCTTGA
GTATTATTTCCCGCGGTGATTTTCGCTTTCTCAAGTATTGGATTTTTTCG
CATGCGCTGTGCGTTACTGCCGACCGGAATCATTTGGTAGGGGGGGGGTT
AGTGCGCCATGATCTCCTCGTCGCAGTAGCAGCAACGATTTGGATAAAAC
TTCATGTGTTTTTCGCTTCATGTGTATCGTATGTCTCGAGATTGGAAGGG
ATTGAAGAAAAATTGTCGTTGCAGCTGTAATGTGGAGTGAGTGGCTTGCA
GTACACCATGTGTCATGGTTGTTGAAGATTCGAGAATAGATTCCTGTGGC
AGGTTTGTATGTGACGTGTGCTTTGCAGCTGTTAGATTTGAATTTTTATT
GAAGGGTTTCTATATGATTGAAGAATGTCACATCAGGGGGTAGCTGCTGA
TATTGTAGAGGGATAAAGAAGCTACAGTAATCGTCAAGTTTTTCTGGACG
TCTCTGAACACGTCGGAATCTGCTTCTTCATCGGTTCACTGAAGATCTTT
TGCTTTCATAAAAATTACGTGTTTCCGTCGGAGTAGGATTTGACGTGTTC
TTCTATGATTTAAGTTGACGCTGTGGTGCGTTCTCGAGAGGGATATGTAC
CTGAACAATACGCGGATGGATTCAGTCATTCTTTGATCGACCGGCGGGCC
GCCTACACACTTTCGAAGTTCGATTCGTCATTCTGCGGAGGAGGACGGGT
GTTCCCGTCGCTTTGCTGGGCCGATTTTCCAGCATCGACAACTCCGCAGC
AAGAAAAATACAAAAATACGTCATATGTGCACAATAATATTTAAAGCGTC
TGCGTCGAGAGGCAAACACGCATACATCTCATCATATGTACGTGCAAACA
AGAGTTTGTCGTAAGAGAGATGGTTAAAGCACTCCCAACATTCCCAAGAG
ACGTTTTTCGATGTCCACATCATCATCAGCAGCTTCTTCGTCTCGTGCCC
TCAAGACGAGGAGGAAGCCGAAGGTGCAAGGTGCAAAAGTTGTGTTATTA
TCGCGCACATGTACTCGTTCTTCACAGCAAGAAGACATCACAGCGGTAAC
ACCATAATATGCTCACAGCATGATGAGCGCTGTCGTCGAGGTGCTATCAA
ATACGCGCGCCTGATTCCACCATTCGTTGCCACCCTTCTCAATCCGACAT
GTTTGTATGCCTGCTGCTGCTGTTGCTGTGCATTCGGACAGACAGAACAA
CTACGAGTACATCGAAGAGGAGCTGCGGCAGCCACACCCGAAAACAGAAT
GATCGCCAGCAAAACAAGAGAGCACAGGGAGGGCCGGAAACACAGAGAGA
GCAGAAGAACGCGGGGCACACCCGCCCAGCATCATGCCACCGGCGTTACC
CGTCCGAAAACACACACCAAAAACCTTCATCGTGGTCGGTCGCAGTCGGC
CGAGACACAAAACGAAGCACCGCGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig606:101089..104365-

>mRNA_P-littoralis_Contig606.20.1 ID=mRNA_P-littoralis_Contig606.20.1|Name=mRNA_P-littoralis_Contig606.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig606:101089..104365- (Pylaiella littoralis U1_48)
CGAAGTCTCGCCAGAGATGACAGCTGTGGTGAAACGGCGCGGGGGTGCAG
CCGAAATTCCCAGAGTCGACGTCTCATCCGAGATGACCGCTGTTGGGGAA
GGGTGCGTGAACGCATCCGAATTTTCCCCGCATCCCGGAGGCGGAGACTC
GGATGGACAAGGAGATCCCGAAGGTGGAGACTCGGATGGACAAGAAGATC
CCGATTGTGCACAGGGCTGGAGGAAGCTGAATTCGAAGACATCTCGACAG
AACAACTACGAGTACATCGAAGAGGAGCTGCGGCAGCCACACCCGAAAAC
AGAATGATCGCCAGCAAAACAAGAGAGCACAGGGAGGGCCGGAAACACAG
AGAGAGCAGAAGAACGCGGGGCACACCCGCCCAGCATCATGCCACCGGCG
TTACCCGTCCGAAAACACACACCAAAAACCTTCATCGTGGTCGGTCGCAG
TCGGCCGAGACACAAAACGAAGCACCGCGC
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