mRNA_P-littoralis_Contig606.13.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig606.13.3
Unique NamemRNA_P-littoralis_Contig606.13.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI)

HSP 1 Score: 845 bits (2182), Expect = 5.310e-301
Identity = 441/525 (84.00%), Postives = 472/525 (89.90%), Query Frame = 2 
Query:  143 GEVEVTATMSLNVFDYLERLPPDALDKLYGLG--AAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGGALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPASRGGXXXXX---RQPQPSGALVSGRKEDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLWSSPPGNXXXXXXXXXV----------LAGRKKLVVVAPKVVESLNAAIVQNGWTSNF 1672
            G +    TMSLNVFDYLERLPPDALDKLYG    AA G QG R+HGQWTCRALLQSLPQLAKQHVMRLLFVEG V KGMLKSWVKKEYQRVHAAS+RKLV LRVLLPSA GQEY+LNPPFRENL+ ALCASDKTPWQGDVPL+ADRSPP+ AKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLMRPVRG GALRITDKGYEFMLKE HVQAWMVVHALINGYG+TQPGCRD+LLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSP+   G  XXX   R+PQP+      ++EDDTSI IIVETNFQVIAYTRS+LHFAMLSLFLELRALLPNAIVGAITRESMRKAL+TGI+GRQVLDFLKWHAHPVVRRR+PVVPENIADQVLLWERERDRMEH+DGVL+DVSYASR++FRG+ +FAN++QGLLWSSP G   XXXXXXX           LAGRKKL+VV+P +VESLNAAIV+NGWTS+F
Sbjct:   11 GLLASATTMSLNVFDYLERLPPDALDKLYGAAPPAADG-QGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAXXXXTQRKPQPAXXXXXXKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIVESLNAAIVENGWTSSF 534
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE)

HSP 1 Score: 546 bits (1408), Expect = 8.100e-186
Identity = 287/376 (76.33%), Postives = 298/376 (79.26%), Query Frame = 2 
Query:  143 GEVEVTATMSLNVFDYLERLPPDALDKLYGLG--AAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGGALRITDKG------------------------------------------------YEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSP---ASRGGXXXXXRQPQPSGAL 1111
            G +  T TMSLNVFDYLERLPPDALDKLYG    AA G QG R+HGQWTCRALLQSLPQLAKQHVMRLLFVEG V KGMLKSWVKKEYQRVHAAS+RKLV LRVLLPSADGQEY+LNPPFRENL+ ALCASDKTPWQGDVPL+ADRSPP+ AKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLMRPVRGGGALRITDKG                                                YEFMLKE HVQAWMVVHALINGYG+TQPGCRD+LLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSP   A   G     R+PQP+G L
Sbjct:   11 GLLASTTTMSLNVFDYLERLPPDALDKLYGAAPPAAQG-QGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGAQRKPQPAGGL 385
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA)

HSP 1 Score: 335 bits (860), Expect = 9.410e-103
Identity = 198/457 (43.33%), Postives = 265/457 (57.99%), Query Frame = 2 
Query:  350 EGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLL-------PSADGQEYR-----LNPPFRENLKGALCASDKTPWQGD--VPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGGALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYC------------------------------------------KVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPASRGGXXXXXRQPQPSGALV-----SGRKEDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLWSS 1537
            +G++ K +LK WV+  Y  VH A++R+L  LRVL+        +A  Q+ R     LNPPFR+NL  AL   D  PW+ D    L  D+  PS AKIE +M  +W+ VL+FLV SD  G    P+ V  FM+++GLM        L IT++GYEFML++ HVQAWM V +LI     +    RDDLL+FLF LSYC                                          KV + YPL ALT  Q  LA+DF++LGLL++RK  S RFY T IAVNL+FG++ A             PS A++     S + +    + IIVETNFQV+AYT S LH AML+LFLELRA LPN ++G ITRES+R+AL TGI+  Q+L+FLKWHAHP V  R P++PENIADQ++LWERER R+++  G L+D+ +     F  + ++A      LW++
Sbjct:   22 DGAISKDLLKGWVRDAYTGVHRAAVRQLSALRVLVRAQELSGAAAAAQQQRRGMIALNPPFRKNLLQALLTPDVAPWKDDPRFALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRGYEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTVSAALQPLEGHHNAQSVCAAPSLSCKPLPAAPSASVNRCSEKVCEDYPLLALTPAQAQLARDFIDLGLLYQRKPSSQRFYTTEIAVNLVFGAAAAEH-----------PSRAVIQAADASAQLDLAPRMTIIVETNFQVVAYTTSDLHVAMLTLFLELRARLPNMVIGVITRESVRQALVTGIKASQILNFLKWHAHPNVINRRPMIPENIADQIILWERERTRVKYDAGTLLDLPFEGVHDFDKVAEYAEELGACLWAA 465
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: W4FDT1_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDT1_9STRA)

HSP 1 Score: 323 bits (827), Expect = 3.630e-98
Identity = 192/468 (41.03%), Postives = 269/468 (57.48%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFV-EGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFG-------SSPASRGGXXXXXRQ------PQPSGALVSGRKEDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLW 1531
            +N F++L  LP  ++D+LY                W C+A+ QS+  LA+Q VMRLLF  +GS     +  WV+   Q    A+I KL  LRVL  +    EY LNP F++ LK AL +   +PW+          P +AA++E+    +W  VL+F+VGS     + PP  V+  +E +GLM+P +    AL ITD GYEFMLK+ H Q W+ V   +    +      +++L FLFQ+SYC++ + Y +  LT+ Q+ L  D VELGLL++R AK+TRFY TS+AVNLIFG       SS     G     R       P P+ A        D  + I+VETNF+V AYT+S LH AMLS+F+++ A LPN  VG +TRES+R AL+ GI   Q+ DFL  HAHP +   SPV+PENIADQ+ LW+RER+R++   G L+D  + + E F  ++ FA     +LW
Sbjct:    1 MNAFEFLGSLPGGSVDRLY-------------QDAWACQAVFQSMSPLAQQIVMRLLFTNQGSYSHDAILQWVQDPAQVKMTAAIEKLRHLRVLRMAHGTAEYVLNPVFQDQLKKALSSLGGSPWEAGRHKLPSEKPIAAAELEQYARKRWDAVLHFMVGSTAV--AAPPPTVIGILEHTGLMQPSKTDARALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILSAEEMLQFLFQMSYCRMNEYYAVADLTRHQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRSSITMSQGLDHLHRPSKSPHLPPPTAAAA------DAHLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFDAGELVD-GFVTTEDFDVVLKFAQDVGVMLW 446
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A6G0WGX7_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGX7_9STRA)

HSP 1 Score: 322 bits (825), Expect = 7.130e-98
Identity = 187/462 (40.48%), Postives = 260/462 (56.28%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPASRGGXXXXXRQ----PQPSGALVSGRKEDDTS----IQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLW 1531
            +N F+YL  LP  +LD+LY                W C+A+ QS+  L++Q VMRLLF    V K  L  W++   Q    A+I KL  LRVL P     ++ LNP F+E LK AL +   +PW+          P +AA +E+    +W  VL+F+VGS       PP  V+  +E + LM+P      AL ITD GYEFMLK+ H Q W+ V   I    +      D++L F FQ+SYC++ + Y +  LT+ Q+ L  D V+LGLL+++ +K+TRFY TS+AVNLIFG             +      Q + + V  R    TS    + I+VETNF+V AYT S LH AMLS+F+++ A LPN  VG +TRES+R AL  GI   Q+ DFL  HAHP +   SPV+PENIADQ+ LW+RER+R++   G L+D  + + E F  +V +A     L+W
Sbjct:    1 MNAFEYLGALPGTSLDRLY-------------QDPWACQAVFQSMNPLSQQIVMRLLFTTTHVSKDALMHWIQDSAQSKMTAAIEKLCHLRVLRPVQGTNKFGLNPAFQEKLKTALSSLGGSPWEAGRKNLPPEKPIAAADLEQYARKRWDAVLHFMVGSTAV--PAPPKEVIGILEHTRLMKPSETDARALHITDTGYEFMLKDIHAQTWIFVLNYIKDIDRKGILSADEMLQFFFQMSYCRMNEYYAVADLTRHQQQLLGDLVQLGLLYRKDSKATRFYTTSLAVNLIFGGMAGQTRTNITMVQSLEAVHQQASSQVVPRPFASTSSASHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQLYLWQRERNRIKFDAGELLD-GFVTTEDFDSVVKYAQDLHVLMW 446
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA)

HSP 1 Score: 320 bits (819), Expect = 5.570e-97
Identity = 191/465 (41.08%), Postives = 265/465 (56.99%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVE-GSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFG--------SSPASRGGXXXXXRQPQPSGALVSGRK--EDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLW 1531
            +N F++L  LP  ++D+LY                W C+A+ QSL  LA+Q VMRLLF    +     +  WV+   Q    A+I KL  LRVL       +Y LNP F+E LK AL +   +PW+          P  A ++E     +W  VL+F+VGS     + PPA V+  +E + LM+P +    AL ITD GYEFMLK+ H Q W+ V   +    +      D++L FLFQ+SYC++ + Y +  LT+ Q+ L  D VELGLL++R AK+TRFY TS+AVNLIFG        +   S+G          PS + +        D+S+ I+VETNF+V AYT+S LH AMLS+F+++ A LPN  VG +TRES+R AL+ GI   Q+ DFL  HAHP +   SPV+PENIADQ+ LW+RER+R++ + G L+DV+    E F  +V  A     LLW
Sbjct:    1 MNAFEFLGSLPGGSVDRLY-------------QDAWACQAVFQSLSPLAQQIVMRLLFSNHATYAHDAILHWVQDAAQDKMTAAIEKLRHLRVLRVVQGSLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKPIPAVELELYARKRWDSVLHFMVGSTAV--AAPPATVIGILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRANMTMSQGLDHITNYAADPSKSRLPSASPARADSSLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFEPGELVDVA---NEDFDAVVKHAEDMGVLLW 447
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: D0NRC9_PHYIT (General transcription factor IIH subunit 4 n=21 Tax=Phytophthora TaxID=4783 RepID=D0NRC9_PHYIT)

HSP 1 Score: 319 bits (818), Expect = 1.080e-96
Identity = 190/479 (39.67%), Postives = 271/479 (56.58%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWV------KKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQ-GDVPLTADRSPPSAA-KIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPAS--------------RGGXXXXXRQPQPSGALVSGRKEDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLWSSP 1540
            ++ FD+LE LPP  L++LY                W C+A+ Q+LP LA+Q VMRLL    +V + +L+ WV       K       A+++KL GLRV +    G  Y+ +P F++ L  AL     +PW+ G + L  D     AA  +ER   ++W  VL+++VGS       PP  VV  +  + L++       AL ITD GYEFMLK+ HVQ W+ +   I     T    ++D+L FLFQ+SYC+ G  Y +  LT+TQR L  DF++ GLLF+++  S RFY TS+AVNLIFG S                 R G       P+ +  +  G +     + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +RR SPV+PENIADQ+ LWERER+R++  +G+L D  + ++E +  + D+A     L WS P
Sbjct:    1 MDAFDFLETLPPATLERLY-------------QDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIPGETKRMPPQFNAALQKLEGLRVFVQQDGG--YKPHPTFQKQLMYALSNLGGSPWERGRLHLPRDPENTFAAVDLERYARARWDLVLHYMVGSTAVQE--PPQSVVDILLRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGSTGQKRSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGAR-----LLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFLEGILFD-GFNTKEDYESVRDYAKGLMVLTWSDP 456
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A0P1AW06_PLAHL (General transcription factor IIH subunit 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AW06_PLAHL)

HSP 1 Score: 316 bits (810), Expect = 1.810e-95
Identity = 190/477 (39.83%), Postives = 272/477 (57.02%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWV------KKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQ-GDVPLTADRSPPSAAK-IERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPASRGGXXXXXRQPQPSGALVSGRKEDDTS------------IQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLWSSP 1540
            ++ F++LE LP   L++LY                W C+A+ Q+LP LA+Q VMRLL    SV + +L+ WV        E      A++ KL GLRV +    G  YR +P F++ L  AL     +PW+ G + L  D     AAK +ER   ++W  VL+++VGS       PP  VV  +  + L++       AL ITD GYEFMLK+ HVQ W  +   I     T    ++D+L FLFQLSYC+ G  Y +  LTQTQ+ L  DF++ GLLF++++ S RFY TS+AVNLIFG S   +G      R       + +G K   T+            + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +R+ +P+VPENIADQ+ LWERER+R++  +G+L D  + ++E +  + D+A +   L W+ P
Sbjct:    1 MDAFEFLETLPAATLERLY-------------QDPWACQAVFQALPPLAQQFVMRLLPTNTSVPRDLLEKWVVPLPGDSHEMPPQFNAALHKLDGLRVFIQENGG--YRPHPLFQKQLMYALSNLGGSPWERGRLRLPKDPENTFAAKDLERYARARWDSVLHYMVGSTAVQE--PPQSVVDILLRTKLLQSSEADSRALHITDTGYEFMLKDIHVQMWTFMLEYIRTLDNTGTLKQEDILQFLFQLSYCQTGGYYAVADLTQTQQLLLGDFIDFGLLFRKRSNSDRFYTTSLAVNLIFGGS---KGQERSHVRLTSSFAGVRAGVKSQVTNPRLTPVLDHEAQLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLVKHAHPKMRQNTPIVPENIADQIYLWERERNRVQFIEGILFD-GFNTKEDYESVCDYARNLDVLTWADP 456
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A3M6VGH3_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGH3_9STRA)

HSP 1 Score: 314 bits (805), Expect = 8.660e-95
Identity = 192/480 (40.00%), Postives = 273/480 (56.88%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWVKKEYQRV-------HAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQ-GDVPLTAD-RSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPAS--------------RGGXXXXXRQPQPSGALVSGRKEDDTSIQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLWSSP 1540
            ++ FD+LE LPP  L++LY                W C+A+ Q+LP LA+Q V+RLL    +V   +L+ WV  E   V       H A + KL GLRV L   DG  YR +P F++ L  AL     +PW+ G + L  D  +  + A +ER   ++W  VL+++VGS       PP  VV  +  + L++       AL ITD GYEFMLK+ HVQ W+ +   I     T    ++D+L FLFQ+SYC+ G+ Y +  LT+TQR L  DF++ GLL++++  S RFY TS+AVNLIFG S                 R G       P+ + AL  G +     + ++VETNF++ AYT S LH AMLS+F+++ A LPN  +G ITRES+R AL  GI  +Q+ DFL  HAHP +R  +PV+PENIADQ+ LWERER+R++   G+L D  + ++E +  + D+A   + L WS P
Sbjct:    1 MDAFDFLETLPPATLERLY-------------EDPWACQAIFQALPPLAQQFVIRLLPTNAAVPCELLEQWVVPEPGEVKRMPPQFHVA-LHKLKGLRVFLQQ-DGS-YRSHPIFQKQLMYALSNLGGSPWESGRLCLPKDLENMFTTADLERYARARWDAVLHYMVGSTAVQE--PPQSVVDILIRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFLLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLYRKRTNSDRFYTTSLAVNLIFGGSTGQKRNHVSLSSSFAGVRAGMKSQMANPRQTPALDRGAQ-----LLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLIKHAHPKMRHNTPVIPENIADQIYLWERERNRVQFMAGILFD-GFNTKEDYESVRDYAKGLKVLTWSDP 456
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BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Match: A0A485KU14_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU14_9STRA)

HSP 1 Score: 314 bits (804), Expect = 9.030e-95
Identity = 189/464 (40.73%), Postives = 263/464 (56.68%), Query Frame = 2 
Query:  173 LNVFDYLERLPPDALDKLYGLGAAGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFV-EGSVDKGMLKSWVKKEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTPWQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRPVRGGG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGKTQPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGS----SPASRGGXXXXXRQPQPSGA-LVSGRKEDDTSIQ----IIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKALATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQDGVLMDVSYASRESFRGIVDFANSRQGLLW 1531
            +N F++L  LP  ++D+LY                W C+A+ QS+  L +Q VMRLLF  + S  +  L  WV++  Q+    +I KL  LRVL      +E+ LNP F+E LK AL +   +PW+      A   P SA  +E+    +W  VL+F+VGS       PP  V+  +E + LM+P      AL ITD GYEFMLK+ H Q W+ V   I    +      +++L FLFQ+SYC++ + Y +G LT+ Q+ L  D VELGLLF++  K+TRFY TS+AVNLIFG     +  S        +    SG  L  G      ++     I+VETNF+V AYT S LH AMLS+F+++ A LPN  VG +TRES+R AL  GI   Q+ DFL  HAHP +   SPV+PENIADQ+ LW+RER+R++   G L+D  + + E F  +V++A     LLW
Sbjct:    1 MNAFEFLATLPAASVDRLY-------------QDAWACQAVFQSMEPLGQQIVMRLLFTSQVSYSQESLLEWVQEPAQQKMIHAIEKLSHLRVLRVVKGQREFVLNPVFQEQLKKALSSLGGSPWEAGRQKLAAEPPISALDLEQYARKRWDAVLHFMVGSTAV--PAPPPTVIGILEHTRLMQPSSSDARALHITDTGYEFMLKDVHAQTWIFVLEYIKDIDRRGILSAEEMLQFLFQMSYCRMNEYYAIGDLTRNQQQLLGDLVELGLLFRKGTKATRFYTTSLAVNLIFGGVLGQTRTSISMVQSLEQVHSASGQQLTKGAVPRPVAVAAHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQLYLWQRERNRIKFDAGELLD-GFVTTEDFDTVVNYAQDLDVLLW 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig606.13.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHY7_ECTSI5.310e-30184.00General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6H5KJZ4_9PHAE8.100e-18676.33General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A836C856_9STRA9.410e-10343.33General transcription factor IIH subunit 4 n=1 Tax... [more]
W4FDT1_9STRA3.630e-9841.03General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A6G0WGX7_9STRA7.130e-9840.48General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A024TBA0_9STRA5.570e-9741.08General transcription factor IIH subunit 4 n=2 Tax... [more]
D0NRC9_PHYIT1.080e-9639.67General transcription factor IIH subunit 4 n=21 Ta... [more]
A0A0P1AW06_PLAHL1.810e-9539.83General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A3M6VGH3_9STRA8.660e-9540.00General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A485KU14_9STRA9.030e-9540.73General transcription factor IIH subunit 4 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig606contigP-littoralis_Contig606:78943..89993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHY7
Preferred nameGTF2H4
PFAMsTfb2
Model size2478
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01873,ko:K03144
KEGG ReactionR03665
KEGG Pathwayko00970,ko03022,ko03420,ko05203,map00970,map03022,map03420,map05203
KEGG ModuleM00290,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001671,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016591,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030234,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032774,GO:0032781,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043462,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051252,GO:0051276,GO:0051336,GO:0051345,GO:0051716,GO:0055029,GO:0060255,GO:0060589,GO:0060590,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070816,GO:0070911,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Exons9
Evalue8.44e-307
EggNOG OGsCOG5144@1|root,KOG3471@2759|Eukaryota
Ec32 ortholog descriptionTranscription factor TFIIH subunit p52/Tfb2
Ec32 orthologEc-12_006390.1
EC6.1.1.9
Descriptionphosphorylation of RNA polymerase II C-terminal domain
Cds size1584
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig606.13.3prot_P-littoralis_Contig606.13.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig606 79746..89902 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791263.5086396-UTR-P-littoralis_Contig606:78942..797451680791263.5086396-UTR-P-littoralis_Contig606:78942..79745Pylaiella littoralis U1_48UTRP-littoralis_Contig606 78943..79745 -
1680791263.6269708-UTR-P-littoralis_Contig606:89902..899931680791263.6269708-UTR-P-littoralis_Contig606:89902..89993Pylaiella littoralis U1_48UTRP-littoralis_Contig606 89903..89993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791263.5236225-CDS-P-littoralis_Contig606:79745..800211680791263.5236225-CDS-P-littoralis_Contig606:79745..80021Pylaiella littoralis U1_48CDSP-littoralis_Contig606 79746..80021 -
1680791263.5376706-CDS-P-littoralis_Contig606:82708..829361680791263.5376706-CDS-P-littoralis_Contig606:82708..82936Pylaiella littoralis U1_48CDSP-littoralis_Contig606 82709..82936 -
1680791263.549751-CDS-P-littoralis_Contig606:84076..841331680791263.549751-CDS-P-littoralis_Contig606:84076..84133Pylaiella littoralis U1_48CDSP-littoralis_Contig606 84077..84133 -
1680791263.559643-CDS-P-littoralis_Contig606:85120..853361680791263.559643-CDS-P-littoralis_Contig606:85120..85336Pylaiella littoralis U1_48CDSP-littoralis_Contig606 85121..85336 -
1680791263.5696743-CDS-P-littoralis_Contig606:85714..858501680791263.5696743-CDS-P-littoralis_Contig606:85714..85850Pylaiella littoralis U1_48CDSP-littoralis_Contig606 85715..85850 -
1680791263.579229-CDS-P-littoralis_Contig606:86027..861631680791263.579229-CDS-P-littoralis_Contig606:86027..86163Pylaiella littoralis U1_48CDSP-littoralis_Contig606 86028..86163 -
1680791263.589268-CDS-P-littoralis_Contig606:86697..867761680791263.589268-CDS-P-littoralis_Contig606:86697..86776Pylaiella littoralis U1_48CDSP-littoralis_Contig606 86698..86776 -
1680791263.6049433-CDS-P-littoralis_Contig606:87748..878651680791263.6049433-CDS-P-littoralis_Contig606:87748..87865Pylaiella littoralis U1_48CDSP-littoralis_Contig606 87749..87865 -
1680791263.615593-CDS-P-littoralis_Contig606:89563..899021680791263.615593-CDS-P-littoralis_Contig606:89563..89902Pylaiella littoralis U1_48CDSP-littoralis_Contig606 89564..89902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig606.13.3

>prot_P-littoralis_Contig606.13.3 ID=prot_P-littoralis_Contig606.13.3|Name=mRNA_P-littoralis_Contig606.13.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=528bp
MNTQQAETLRDDHTLSAGEVEVTATMSLNVFDYLERLPPDALDKLYGLGA
AGGKQGARNHGQWTCRALLQSLPQLAKQHVMRLLFVEGSVDKGMLKSWVK
KEYQRVHAASIRKLVGLRVLLPSADGQEYRLNPPFRENLKGALCASDKTP
WQGDVPLTADRSPPSAAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVV
KFMEESGLMRPVRGGGALRITDKGYEFMLKETHVQAWMVVHALINGYGKT
QPGCRDDLLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRK
AKSTRFYPTSIAVNLIFGSSPASRGGGGGGQRQPQPSGALVSGRKEDDTS
IQIIVETNFQVIAYTRSRLHFAMLSLFLELRALLPNAIVGAITRESMRKA
LATGIQGRQVLDFLKWHAHPVVRRRSPVVPENIADQVLLWERERDRMEHQ
DGVLMDVSYASRESFRGIVDFANSRQGLLWSSPPGNDEEEAGGSGVLAGR
KKLVVVAPKVVESLNAAIVQNGWTSNF*
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mRNA from alignment at P-littoralis_Contig606:78943..89993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig606.13.3 ID=mRNA_P-littoralis_Contig606.13.3|Name=mRNA_P-littoralis_Contig606.13.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=11051bp|location=Sequence derived from alignment at P-littoralis_Contig606:78943..89993- (Pylaiella littoralis U1_48)
GTACAGGTATCCGGCCGCTATCTCTCAGTGCTGTGCTGCTGCTGCTACAC
CGAGCAGTGCCAGTACAGTGTTAGAAAGGAGGGACACACAAATGAATACC
CAGCAGGCAGAAACATTGAGGGATGATCATACATTGTCGGCGGGAGAAGT
GGAAGTGACCGCAACGATGAGCCTGAACGTGTTCGATTACCTGGAGAGGT
TGCCCCCAGATGCCCTCGACAAGCTCTACGGGCTGGGCGCTGCCGGGGGG
AAGCAGGGCGCGAGGAATCACGGACAGTGGACCTGCAGGGCCCTACTGCA
GTCGCTGCCGCAGCTCGCTAAGCAGCACGTTATGCGACTACTGTTCGTGG
AAGGGTCCGTGGACAAGGGGATGCTAAAGTCGTGGGTCAAGAAGGAGTAC
CAGCGCGTTCACGCCGCGTCTATCCGCAAGGTGTTTGATTTGTCTTGCTA
GTTGAGAACGAATTTTGGAGTTGTTTGCCGCAACTCTCCGGATATCTATG
CAGGCATCATCCATGAACCCAAGCAGCTATCGCTGTAGGGCAAACGATTA
CCCATTGAGCAGAGCAGCGTTCCTCGCATGAAGGCATACATCACATGTGT
TGGGTCAGTCACCCCGAAGCAGCCCCTCCCAAATATTTGCTGGTGTACTT
ATTATGTGACGTTCACACCACCTCCCCCTGACGAAATTTATCACTCGTCA
CAGCACAAGTTCCAAGTTCTGTACAGCGACGTATCTACATGCGTGCCGAT
AACATGATGTCCGCAACAAAGGAGGGACCGGACAGCAGTAGATATCCGCG
CACCAAATCGCACAACATTCTTGCAAAGCTCTCAAAAGGGATCCTTCTGT
CTGATGTCCACCGTTGTGTTACTCTTCTTGCTGCGGAGAGAAGTCTACAG
TCTACACTGCTGTAGCTTTTTGAAAATTTTCCCAGGGGGGCTGCTATTCT
GCGCAACGTATGATATGTGTGTTGTCATCCCATATTCTCTGGCACACTAG
TCTGCATCCCGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACA
CAGGAGGAAGGTCAACACAGGAGGAGTTATCCCCACCTTCCTTCTGCGGT
ACATGCGTGAGATTTCTTCTCGCGAGCAGGGATCCGCGGTTCCTACCCTC
GTCGGGGAAGCCGAATCTGCTTTTACTAACAGCATATCATAGCTGCTTTC
AAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCGCTTTCCTCTGC
ATCTAGTGGTGAACGAGGGGACCACTAGTCCACCGGGGCGACCGGTAGTG
TGTGGCTGTGATACCACGTTCTATCATACAAGTAATATTTTTTGAAAGAT
TGGGACAGCAGTGGCGGCAAAGGACCAGGACGTTATGGTGGCCGCCAGAA
AGTATAGGATCTTAGTTCCTGTTCTCTCTCGTATCATACAGCAGTGTTTT
CCGCAGGCATGTACATACCTTATCCCACAGGACTGCACGACTAGAACGCG
ATAGCTTGTTGACTACCGGAAGACCAGCCTGACACAGAGCGAGGGAGCTC
GAGTCGATGCGCCTGACACAGAGGAGGGAGCTCGAGTCGATGCGCTTTTC
GTCGGTTTCATATTTTAACGCTGGCATCTGTTTTTTGGGAGTCCTTTGCC
TTGCGTGCCTCGCTCTCTGTCTCACGCTCGAAACAAAAGACTTGCGTGGT
GACGAAAGTCGACTCGAGAGCACGAAACAAGTCCGCTCTTTGATTCACGA
CGACCTCAACGTATACGTGATGCCTCGTGAGGTATGATACGCCCGGCGCA
AGCCCTCTATGTCCCTCGCTGGCTCGGAAACTCCTTTTATCATACCTGGT
CCAGCCTAACTTCAAGTGTGCCCTCCCTCCTCCCTCCTGAACCGGCGCTT
GAGGATGAATCTGATCAGTCGTGTTCGAGCGACAAACACCACTGATCCAG
CGATAGAACGCTGTGCACCCCCCCTTGCCACCGCCCCCCTACGAAATCAC
TACTGATCGGACCGCCGATTGATTATGCCGCGGACAACGCGTGCCGAACC
AACTGCACGCCTTCCTTACGCCACACCACCCCAATTTTTCTTTATCGATG
ATCGTCGAACGAACGGACGCGAGCACAGCTGGTCGGCCTCCGAGTGCTTC
TGCCGAGCGCGGACGGACAGGAGTACCGGCTCAATCCGCCGTTCCGGGAA
AACCTTAAGGGGGCTCTCTGCGCGTCGGACAAAACGCCGTGGCAGGTGCG
TTGCGTAGCGGTGACAAGAGAGTAGTGAGTGATCGTGGTGGTTTGTGGTG
GTGAAGATGACGATGGTGTTAGTTGGTGATGGTTGTGATGATGATAATGT
GATGATGATGGTGATTGTTGCGGTGGTGGTGATGGGTATGGTGATGATGT
TGGTGGTGGTGGCGGTGGTGGTGGTGGTCACGGTCATGGTGATGATGATA
ATGATGGTGACGACGATGCTCGTCATCCTGGTGGTGAAGATGATGATGAT
GATGATATGTTACACCGAGCAACGTCCCACATCAATTTGCGTGTTGCATT
TGTCGTGAGTCACACCAAAATTTTGACCTTTTGCACGGTACGCTCCTCCG
TTCGAAAGTCCACACAAAAAGCCTTGCGGCATTGCGCACAAACACCACCC
GGGAAGGCCTTCAGCGAGCTCATTCACCGCTGTCCACAAAGTAGGCATGA
TGTTAGCACCATCTGTCGTACCACCTATGTTTGTTCTTGTTCCGAATTTT
GCTTTTTTCCACAAAACTGGTCTTGTGTGCTTGAGAGGGACTCCCGACAA
GTCCTGATGCCCTCCCAGCGGTTCTGGATAAGATAAAGGAAGCACGACCG
CAAGAGCGAGATCCATCCGAAAGTGCTGTCTTGTCTTTCACCCATGGTCT
ACGTACATTTATTCGTCGCTGCCCCGCATCTTGCTGCTGCTGCTGTGTCA
TATCTAGTCGCATCTGTCGACTGTTTGTAGACAGTGACGATCGATCTCCA
ATGACAAACTACGTCCTTGCTGCTGCGATCATCAACCGCCGTGATGATGA
CGTCTGTGTTTGTCTGCATTTCTTAACTGTTTGTATTTCTCACGATATCC
CGTTTTTTTTTTTCCCGGTTGTTTGTTCTTAGATCTTTGCGTGTGCACCG
TGTCTGGGCCTCTCTCACGCATCTGTCCGTTTGCTCCTCAATCGCCTGTC
TTTCCTGCTGGGAAAAGGGAGACGTGCCTCTCACGGCAGACAGGAGCCCG
CCGAGCGCGGCCAAAATCGAGAGGCAGATGCACTCGCAGTGGCAAGGTCA
GTACATCATCAACTCCCATTTCCTTATTTTTGATGGAGGCCCAGCCCTTA
TACATACGCTACTTTCCTCCGCTCCCCTGCTTCCGCGCCAGGCGTATGTT
TGCCGTTTGTTTCCATGTATCGCCTACGCACCGCCTTATCCTCCCCCTCG
CGCCCTCTCCCCTTTTCTCCCCGCACACTTTGTTTGGAAAAATACGCCGT
GCGAATCTGGCAACAAACAATCGCGCAAAAGAAGCGCTAAAGTCTTTCAG
GCTCCAGCCGCGGCAGTACATGCAGCAACCGGCAGTACTTCGTTTCAAGT
TGAAATGCACGGTAAAACGCTTTAAAATAAACTCAGGCATGCAACAAGCG
AGTGCGCCCACGCCCCCCCCCCCCATACACAGGTCGACCCTGCCGGCGGA
GCCCCCTGAAAATGTAAAATGTAGTTGGTGTCCTCCAGGATGATGTTGAT
GATGTTGTTGAATTTCTTGCCTTTTTTACTGAAAGCCTTCATTGGCATGC
CCCACCGTGTGATTTAAAACCGTTCTCCAGACGTGCTCTACTTCCTGGTG
GGGTCTGACGAAGAGGGAAGGAGCATACCGCCTGCCAGGGTGGTAAAGTT
CATGGAAGAGAGCGGGCTGATGAGGCCTGTTAGGGGGGGGGGTGCCCTCC
GCATCACCGACAAAGGGTAAATTCCATAGTCGGTGGGGGAAAACTGACCC
AAAACTGACCCAATTGCCTGCAGAGAGAGAGAAATAACCATTTTTATTTT
GTGCACGCAAGACCAACATACGGTACAACCGACCGTGGGCTTTCACGTTT
GAAGGAATCTGTTTCGCTGACCCTCTCAACTTAAAAAAAAAAGGTACGAG
TTCATGCTGAAGGAGACGCACGTACAGGCCTGGATGGTGGTTCATGCCCT
CATCAACGGCTACGGAAAGACTCAGCCCGGCTGCAGGGACGACCTTCTCG
CCTTCCTCTTTCAGCTCAGCTACTGCAAGGTACCGGGATCCTTGTGCGCG
TGCTTCACCGTCTCTCGGCTTCGCTGCTGCAGGCTCTTTGCGCAAGTCTT
GAGCGTGCGTGCTTGCGTGCGTGTGGGGATGCTTCTCTTTTATTTCATCC
ACAGCAACCGCGCTTCTCGTAGGTAAACGAGCTGACGAATGGCCAAGACG
TCAAGTATTCCGGAAGTATCAGGTCGAAAACCAAGAGGCTTTCGTCGACC
GGGGCTCCTCGAAGGGGCCCCCGAAGGGATAACCGTGCGTGCGGGCACGT
ATGCTCACAACAAAATTACCCTACCACGACCACTCCCGCCACTTCTACAG
CACCGCTGATGCCATCTCTATCGTTCCGCTGATAATGACAAAATCATGAT
TCGTCAGGTTGGAGATGCCTACCCCCTGGGAGCCCTCACCCAGACCCAGC
GCGACCTCGCCCAGGACTTCGTCGAACTGGGCCTCCTGTTCAAGCGAAAA
GCCAAGTCCACCAGGTTTTACCCCACCTCCATCGCCGTTAACCTCATATT
TGGTTCGTCTCCCGCCAGCAGGGGTGGCGGTGGAGGCGGACAACGGCAGC
CGCAGCCTTCAGGGGCGCTCGTGGTGAGAGAGTCGGGTGGAAAGGGGCGG
GTCGGTGGAGAAGGGGGGTTGCTCTTTTGTTTTGGGCGGGTTGGTGGGGC
GGGGGGGGGGGGGGTGGCTCTTTATTTCAGCCCAAATCGTGTTCAGCAAT
TGTCGTTGTCGGCATTAACTAGCTTCCCTTCTCCCCCCCCCGCCGCTGAA
GGCCTGATGTGGTCAGACCGGTCGTGGCTTTGTTTATATTATCGGCGTGT
GTGAGGACCTGTGGTGACGTGTGACACGAAGCTATCGAAAAAATTATGTG
TGTTGATTCGTGGCGTGTTTTTTTCTTTCCCCCCCCCGCACACCCCACAT
CTGAATGGGAGAGCAAATGCTTTACAACCAGGCATAGTGGTGTGGGAAAG
TGCTTTACAACGATATGTAGTGGCTTGAGCTTGAAGAGGAGTTGAGGAAG
GCTGGAGCATGGGCCGAGGTTGACTGTTTTTCACGAAGGGCAAGTAAAGC
GGTGCGTAGCAGAGAGCGACAGAGAGAGAGAGGGGGGGGGGAGGGAGACG
GAGAGATGCGATTGTGCCCCAATGAGTGGAGCTCATATCGGCGACACTCG
TTTCATACACGTTGATGTACGGTACTGCTGTGATACTCGCGTAAACAGCG
CTCAACCGTTGGACATTGCTTTTCAAGTCGCGGTAGGGGTTGGGCAGGGA
CATATGTACGGCGCCCCGTTTCATCATATAAGCGTGGTGAACCGGTTCAA
ATAAACTGTCTACTGTGTAAGGCAAGCAATAGACGTACCGCCCCGTTCCC
CCCCCCATCTTCCCTCCCTATCTGCACGTATACCTCGTTTGGTCGTTGGC
CGTGGTGTCGGATGTGTGTTATTCTCTTTCTGCTATGTACCCCTGCCGCT
ACACACCGTACTACTGTTGGCGATGATGGCTGCTTGCTTGCTTGCTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTCGCCTGGTGGCGTT
CGTGGTTCAGAGCGGCAGGAAAGAAGATGACACGAGCATCCAAATCATAG
TGGAGACAAACTTCCAGGTACGCCCGTTACCCCTTCGCCCCCTTTCTGTT
CCCCGTCCTACAAATACCGATGTGCCGCCATTGGGTCTTGCCTCTTGTTC
GCGATTGAACGGATAATCTGGATAAGCCTTGTATGAAACTTCAAGTACGT
GTGAGTGAGTGTGAGTGTGTGTGTGCTTGTGTGTGTTTTGTAAGTGTGTT
CTTTTTCTACAGCCTCGACCACGTAAGTCTTTGTCGCTCAACGATTCGGC
CCAAAGTGAAGCAGGAACGTGGTGGACCATGGCGCCAAGACATCGGTTGC
GTATAGAAACCAAGTACCACCACCACCACAATGGCAACAATTCTCTGCAA
TATAACTCTTGCCGTCGACAGCTGTCGTACTGATGTAGTGATCGAATCAA
GCACGCCGATCACGTTCCCACCATCTCCGTACATTGTTCTAGTTTTCCCG
ACGGGCGCTCTCCGTTCCATTCAGCATGGAGGAAGGAGCAGGGAAGACGA
AGGGTTAGGGGCTCCTACTCTTGACTGCTGGGGTGGCGGTGGATGACAAA
GATTCCCAGTGTTCAACACATGTACTGCTGTGGCCTGTCTGCGTGCTCTA
CCCCCCTTGATAACTCCTGTTCTACCACATGGTAAGCATTCAATGATGAG
GCACACCGTGCCATGCAACTTCTCCACCTTCATCGCCGCTTGCCTCTCCC
CACTGATCCGTCAACGCCATCCCGAAAACCCCCTCCGCCGCCCTACCTTT
ATTAGTCCTGCTTTTCGAACGGGATGCGTGATTCAATGGTCGTATGACTA
AGGCAAGCAACAATCGAGCATCCCCCCACCCCCTCCCATTGACCTCTTCA
AGTATATGACTCTCAAAGGTGTTGTCTCCCACCCATCAGATTTTTATGCG
AGAAACCCGACGTGCGCCGTGGGGGGTCTTTCTCAAATAGGGATAGATGC
AAGCGGGTCACTATGACCCATGTATCACACTTGTACAAGGTACTACTGAG
TTACGGAAAGGGCAAGGAACTTAAGCACTGACCCTTGCCGTAACGCCACC
TCGCCGGCGTGCGCGCGTGCCTCCCCCCCTGTGTCTGTCTATGCCTACCA
TCCTTGCTCTCGGCTGTCGCTCTTCAATGTCTCTTGCTATTGTGCAAAAA
ACAAAAGGTGATTGCGTACACGCGATCGAGGCTTCACTTCGCCATGCTCA
GCCTCTTCCTCGAGCTGCGAGCGCTGCTGCCGAACGCGATCGTCGGGGCC
ATCACGCGAGAGAGCATGCGCAAGGCCCTCGCCACGGGGATTCAGGGCCG
GCAGGTGCTGGACTTCCTCAAGTGGCACGCGCACCCCGTCGTCAGGAGAC
GGTCTCCCGTCGTGCCGGAGAACATCGCCGACCAGGTAGGCGTGCGTTTG
TGCGTGTGTGCGTTTTTGCTGGCGTGCGTGCGTGCTTGCGTGCGTTTTTG
CTGGCGTGCTTGCATGCATCGTTAGCAGCAGACCGTGCGTGTTGCTCCCG
AGGAAGGAGGCGGGCGGGGGCGGGGGGGAGGGGGGCGGGGGCTTGTCTCG
TCGCAAGCACTCTCAATATGTGGTACTTTGTACCATATATGATATGACGC
CCTTGTCTTGTATCGCAAGGATAGGACGGCCTGTCTTCAAGGTTCCGCCC
GGCTTTCTTTCTCTCTCGTCTCCCTTCCGCCCCCCCTCAATAAAAACTGT
GTCCTCCGTCCTCCCTGTCCTCGGTCGTTGATCACCCACGATAACGGCAC
CATATGAATTGCTTCAACGAGACCTGCACCTCAAACGGCTTTATGTGTTT
GGCTCCGTCGGCGTAGGTGTGCCTCTTATGTTTACTGTAGCGTTCAAGGT
TTCCGGCTTTTGTGACCGAGTTTCATTTTTTATTTCCTTATTGAATGCAC
ATGGGTCTATTTGTCAATTCGCATTGGTTTTGTTTTCCAAAACTTTAAAA
ACAAAATAGTGTATGAGAGATACGACAGTGTGGTTGACGGGACGTCGTAT
CGTGCATATATTATACTTCCTCTGTATCATAAGTCTGTGCCGTTATGTTT
TTACGCCCCCTCAACGGTGTCCGATGTCTTCGGCGATAATTTTTTCGAAA
TCTTCGGAGTTTTTTGGGTTGAAACACATATATATTTCTTCCTTGCGCAC
TACCCTGCGCATGGGCTAGCGGCTAACAAAAAAATAGTCAGGCCAAGAAT
GGCCGTATTTAACCCTTTCCAGAGGTGGAGTGGGAGGCGGGGGCAAAAAA
AAAACCAATGCAATCCCCCCCAAAATTATCCCTTACCCTGAACCTAGCCC
CCCTACCTCAAAGATTCGTGTCGAGTCCCTCCTTACTAAAATCAGTATAA
TAGTGACGCGACGCTAAAACCAAGACACTTGGGTTTGCCACACTAAAACG
AAGATGCTTGGGACTCATTCTCTAAAATCAAGACATCTGGCGGAATCAAA
ATTCTTTCAATGGGCCAAAATGGGCATATTTTGACTTCATTTTAGTATAA
ACAACTGGCTTTTTTTTTGCTTTTTTTTTTTGCATCAGCTTCTTTGAGAC
TTCATCTTTCGAACGAACCTAACTATAGGATAATCGAAACAGTATGGATG
CGCAAACAATTACACGCCCATAACGGCACAGACTTATGATACAGAGGAAG
TATGATATCCATATTTTGTGACCACAGAAAAAAAAATCAAGAAATCCTTA
AGTTTACCAAAACCTTGATGAGTAGTGTGGAGGCAAGTGTTCACTTTTGG
AAGATGTCGTACCGGATGCCAATGGGGTAATTTGTTTTTGTATTGTATGG
TCTTCGGAAAGGCTGTGAAATACCATGGTAGGTGTTTGGCAATGTCATCC
GCGTTTTGGACACAATCAACAACCTTTCCATGAAAGCTGTTCGTAGCGAG
CTCTTAGAGAACTCGATGCAACCCTAGAATCACCGTGCCAACACCTTGTG
GCCGCTGGTATGTATATGGTGTAAGCGCGCCAGGCACACAAAAAATAGTC
ATTCGAGAGGCGGCTCTTTCTAGGTAGGGTCTGACGTGCGTGTGACACCC
CAGGCACAGCGTTGAAGGCGACACCATAAAACCACAGTCACGACCTCGCT
CTCTAAACGACCTGTCAACGTAAAAATTGTTCCATCTTCTTGGTTCTCAC
TTTCATTCGCTGCTCTCCGTCAGTAGAGCGTTGGGCTGGCTGTGGGCTCA
TCCAATCGACCGAGAGAAGGCGTTGCTCGCGGTCCCACATAAAATAAACT
ACGGCACCTATCCCACCGCCTCAAAAGATAACAAAAACCAATCCAATGTG
TCCAGCACGCAGCGATGCCTCTCTCTGTCGATTGAGTAACCCCTCCGCCA
ACCGAACGCCCTGCCGACGGAGAGCAGTGGGTGGCGGCGACGGCCAAGAG
GGTTTCACCTTTGATGGGTCGTGTAGGGAGCGAAAACATGACTGAGGTGT
TTTGACACCGCCTTCGAGCCGTGCCCGGTGCAGGTCGGAGTGGAAACGTG
ACTACTGTGGTGTTTTGACCACGCCTTTTGCGGGGGGTCATATGCGCATC
AGCCCGTTACCTTCCAAAGCGCCGCTCCTCGAGCGATTTATTTTTTATTT
TTGCATGCCTGGCGGCGCTTCCACCACCTACCAGATGGGCCAAGGGGTTG
GCCACAGCAGTGGCGCAAGGGTTCCAACGAGCACTGTACGAGCTATGATA
GCTACGTTCAGATTTCATGGCGCAGTTATTTGTGTCGTTGACTGAAACCT
GAAGCCTGTCGGTGTATCGTAATCTCGCCGCTTCGAACAAGCCTTTTGCG
ACTGCTGGGACATTCAAAAGTTTGGTTCAACATTTTTGCCTTTTTAAGCC
GGTTTAACCCTAGTCGCTTGTAATGTTTGACAACAACATTTCGTGCTGTA
TGTATCAAAGGCGGTAAAAGGCGGTGAAAACGTTTTTTGGAAGTCTTGCC
AATAACTTTTTTAAGTTTGTGAGGCAACATTCTGTCCCCATTGACAGAGC
TTTGACGATTCTTTCCACTGCACTTTCATAATATAAAAGTCAAACAACAA
ATCTCATGAATTAAATTCCCAGGTTTTGCTATGGGAGCGAGAACGAGATC
GCATGGAACACCAGGATGGTGTGCTCATGGACGTCTCGTACGCCAGCAGA
GAGTCCTTCCGCGGCATTGTCGACTTCGCCAACAGCAGGCAGGGGTTGCT
ATGGAGCAGCCCGCCGGGGAATGATGAGGAGGAGGCCGGTGGCAGCGGTG
TGTTAGCCGGTCGGAAGAAACTCGTGGTGGTCGCACCGAAGGTTGTCGAG
AGCTTGAACGCGGCCATCGTCCAGAACGGTTGGACGAGCAACTTTTGACG
GAAGGAGAGGTTCTTGGTTTTTGTTCACCACGTACGTAGGCTCTGCTCTG
CTCTGCCGATGAGGATTCGAGGGAGCACAAGTTACGTTTCGTTTGGATAC
GCCCACGGACGTGTGGATGTGCAGTTCTGGCCACCGCGAAATGCTGTATT
TTTAATGTTTTATTTTAGGAAGAAAATTCATGTTTTGGCTTTTATTTCGG
GGGGGAGGGAAGGGGGGTCGTGGCTGGTCGTGAACAACATTCATATTAAC
CTGCGTACGCTGAAACAAAGCCTCCCTTCCCTCGTTGTTAAAAAAGGAAA
CGTTACACAAGCGTACAGACGAAACATGAGCGAACGCACACGTCTCTTAT
TTTCTTCAGCTGTTGTCGTATTGTTATTGTTGGTGCCGCTGCCGTGGGCG
CTGTGGGCGAGTTGTTATGGGTTTGGGTGCCCGTTCGTGTCAGTCATAGA
GTGTTACGTTTTCCGTGAGCAGCGGAACTTGAAATGCGGGAAATATTTCG
TTGGTAATTTCCATCCTGCCTCTGTTTTCCCCAGTGATGGCTGTAATGCT
CGTTGTTGTTTTGACCACGTGGCGAGTGGTGAAGCAGACTTTGGCAGACT
ATCGCCCTTCTCCCACCACCCGGAAATTATTTGTCAAGTGCTTGATTGAG
CTTTGAAAATAGAAGCAGCAGCAGCGGCGGTATCGATCAGCTCACGACAC
CGCCAGCTGTAATACTGTAGCCTAAGCGAATCCACGTACACTCGGTATAA
TACACACATGAATTCATGTATACGGACGACCAGACTCCGGCAAGTATTTG
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig606:78943..89993-

>mRNA_P-littoralis_Contig606.13.3 ID=mRNA_P-littoralis_Contig606.13.3|Name=mRNA_P-littoralis_Contig606.13.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig606:78943..89993- (Pylaiella littoralis U1_48)
ATGAATACCCAGCAGGCAGAAACATTGAGGGATGATCATACATTGTCGGC
GGGAGAAGTGGAAGTGACCGCAACGATGAGCCTGAACGTGTTCGATTACC
TGGAGAGGTTGCCCCCAGATGCCCTCGACAAGCTCTACGGGCTGGGCGCT
GCCGGGGGGAAGCAGGGCGCGAGGAATCACGGACAGTGGACCTGCAGGGC
CCTACTGCAGTCGCTGCCGCAGCTCGCTAAGCAGCACGTTATGCGACTAC
TGTTCGTGGAAGGGTCCGTGGACAAGGGGATGCTAAAGTCGTGGGTCAAG
AAGGAGTACCAGCGCGTTCACGCCGCGTCTATCCGCAAGCTGGTCGGCCT
CCGAGTGCTTCTGCCGAGCGCGGACGGACAGGAGTACCGGCTCAATCCGC
CGTTCCGGGAAAACCTTAAGGGGGCTCTCTGCGCGTCGGACAAAACGCCG
TGGCAGGGAGACGTGCCTCTCACGGCAGACAGGAGCCCGCCGAGCGCGGC
CAAAATCGAGAGGCAGATGCACTCGCAGTGGCAAGACGTGCTCTACTTCC
TGGTGGGGTCTGACGAAGAGGGAAGGAGCATACCGCCTGCCAGGGTGGTA
AAGTTCATGGAAGAGAGCGGGCTGATGAGGCCTGTTAGGGGGGGGGGTGC
CCTCCGCATCACCGACAAAGGGTACGAGTTCATGCTGAAGGAGACGCACG
TACAGGCCTGGATGGTGGTTCATGCCCTCATCAACGGCTACGGAAAGACT
CAGCCCGGCTGCAGGGACGACCTTCTCGCCTTCCTCTTTCAGCTCAGCTA
CTGCAAGGTTGGAGATGCCTACCCCCTGGGAGCCCTCACCCAGACCCAGC
GCGACCTCGCCCAGGACTTCGTCGAACTGGGCCTCCTGTTCAAGCGAAAA
GCCAAGTCCACCAGGTTTTACCCCACCTCCATCGCCGTTAACCTCATATT
TGGTTCGTCTCCCGCCAGCAGGGGTGGCGGTGGAGGCGGACAACGGCAGC
CGCAGCCTTCAGGGGCGCTCGTGAGCGGCAGGAAAGAAGATGACACGAGC
ATCCAAATCATAGTGGAGACAAACTTCCAGGTGATTGCGTACACGCGATC
GAGGCTTCACTTCGCCATGCTCAGCCTCTTCCTCGAGCTGCGAGCGCTGC
TGCCGAACGCGATCGTCGGGGCCATCACGCGAGAGAGCATGCGCAAGGCC
CTCGCCACGGGGATTCAGGGCCGGCAGGTGCTGGACTTCCTCAAGTGGCA
CGCGCACCCCGTCGTCAGGAGACGGTCTCCCGTCGTGCCGGAGAACATCG
CCGACCAGGTTTTGCTATGGGAGCGAGAACGAGATCGCATGGAACACCAG
GATGGTGTGCTCATGGACGTCTCGTACGCCAGCAGAGAGTCCTTCCGCGG
CATTGTCGACTTCGCCAACAGCAGGCAGGGGTTGCTATGGAGCAGCCCGC
CGGGGAATGATGAGGAGGAGGCCGGTGGCAGCGGTGTGTTAGCCGGTCGG
AAGAAACTCGTGGTGGTCGCACCGAAGGTTGTCGAGAGCTTGAACGCGGC
CATCGTCCAGAACGGTTGGACGAGCAACTTTTGA
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