mRNA_P-littoralis_Contig604.37.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig604.37.2
Unique NamemRNA_P-littoralis_Contig604.37.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.37.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:142120..143687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size559
Hectar predicted targeting categorymitochondrion
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.078139-UTR-P-littoralis_Contig604:142119..1423051680791259.078139-UTR-P-littoralis_Contig604:142119..142305Pylaiella littoralis U1_48UTRP-littoralis_Contig604 142120..142305 +
1680791259.0890484-UTR-P-littoralis_Contig604:143067..1431421680791259.0890484-UTR-P-littoralis_Contig604:143067..143142Pylaiella littoralis U1_48UTRP-littoralis_Contig604 143068..143142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.099397-CDS-P-littoralis_Contig604:143142..1431701680791259.099397-CDS-P-littoralis_Contig604:143142..143170Pylaiella littoralis U1_48CDSP-littoralis_Contig604 143143..143170 +
1680791259.1167028-CDS-P-littoralis_Contig604:143418..1436871680791259.1167028-CDS-P-littoralis_Contig604:143418..143687Pylaiella littoralis U1_48CDSP-littoralis_Contig604 143419..143687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.37.2prot_P-littoralis_Contig604.37.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig604 143143..143687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig604.37.2

>prot_P-littoralis_Contig604.37.2 ID=prot_P-littoralis_Contig604.37.2|Name=mRNA_P-littoralis_Contig604.37.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MRQWTSWCGLASAAKTSTRRSNERFTALCRMCVRNVKNAASQGDETRTMA
GPTVAPAPGGANSESPMVAPTVAPMMAGDGDGDGGRHDNRTHHGPYDGP
back to top

mRNA from alignment at P-littoralis_Contig604:142120..143687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig604.37.2 ID=mRNA_P-littoralis_Contig604.37.2|Name=mRNA_P-littoralis_Contig604.37.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1568bp|location=Sequence derived from alignment at P-littoralis_Contig604:142120..143687+ (Pylaiella littoralis U1_48)
GAGTTGGTATGGTTCGGAGAATGGAAGGTGTTCGGCTGATCGGGAGTTCT
CCTCGCGGGGCCAGCAAGACCGTGATTAGACGGGTGGACATCATGGCGGC
CGGGGTAGTAGCGGCCGAGGTGGTGGCGGCCAGGAGCGCGGTCGAAGGCG
TGGTGGTGGTCTAAGAAACCGACGCAACGGATTCAGGTGGGAAGAGGATG
GACACTGGGATGACGACTATATGGAAGAGTTGGGGTATGGTACGGCTGAC
GGTAGCGATACTGTAGAGATCAGTGCACGAGGTGCTGCAGTACGGTCACT
GTCGTGAAGAGCAACAAACGCCTCTGCTGGAGAAGTAGCACCCCCGATTT
GTGTCGAGCCTGCCCCTCCTCCGCTGCCGCATCAAACGATACTGTTGTAA
CACAACCTCAGGCATCCAACACGCCACGAGAAGATGCACTTGCTGTCACA
CCAGAAATGTCTGCACCTACCATTTCTCAGCCTCCTGTTATTACCTTAGC
CTCGGCTCCTTTGTCGGTGCTGTTGGTGGCACCCGTCGGCGAGAGTGTGG
ATACATCCAAATCGGGGGTTAAGGTAAAACCGGAAGTGGTTTCGGTGGCT
CCTGTCGTGGACATTCAGACAGAAAGGGGTGCTTGTGCTCCTTCCCTTGC
CGAGGCATCGGGAGGGTATGGTGGTGGTGAATCCGACCAGTACTCAGAGC
TCGAACTCCGTCAGATCCCTAAGGAATATGCCAATTTCTCTGCGGTGGGG
TTGATGAAGCTACCACGTTTGGCTTTCAAGGGGGACGATGTCGCGGGCTT
GGTTACTTTCAACACAACATTGTCTCGCAACGTACAACAAATCCGTGTCG
CGGTAGGGGACTACAAGGCGTCCGGCCAGTGGATTCGGGGTTGGGAATTT
GCCCTTGAACGCCATGTCCTCACTGCTATTTCTGTGTCGGCTGACCAGGG
CGGGGCGTTGAGCCGCAAGATCTTGTCCGGGTTCAAGCAAACGGGAGGTC
GTTTGACGGTGGCATGGGCGGGGATGAGGCAATGGACTTCTTGGTGCGGG
CGTTAAGCAAGGCCTTGGACTTGGATTCGCCGGAGGGTTTTGTTTAAAGT
GCAAATTTTGGTCGTGGCTGAAGGTACCACCTTCTCCAACTTCATGGAAA
CGCTTTGCTCGCTTATTCAGAATGTTCGCAGTGTCGGTCACGTTGCACCA
CACGATAGTACGTTGCAATTCGCAGTCAAGGGTTCGGTGAGTGACCAGTT
CAGCTTGTTGGAGCTTATTATTTTTATTGTTTGGTGTTTTTGTCAAAAGT
TGCCAGCGCGGCGAAGACTTCGACGAGGAGGAGCAACGAGCGATTTACCG
CGCTTTGCAGGATGTGCGTGAGGAACGTAAAGAACGCGGCTTCGCAAGGG
GACGAGACCCGCACGATGGCAGGACCTACGGTGGCGCCGGCGCCGGGAGG
CGCCAATTCCGAGAGCCCTATGGTGGCGCCTACGGTGGCGCCTATGATGG
CGGGCGATGGCGATGGTGATGGCGGGCGCCATGACAACCGGACTCATCAC
GGCCCGTACGATGGCCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig604:142120..143687+

>mRNA_P-littoralis_Contig604.37.2 ID=mRNA_P-littoralis_Contig604.37.2|Name=mRNA_P-littoralis_Contig604.37.2|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig604:142120..143687+ (Pylaiella littoralis U1_48)
ATGAGGCAATGGACTTCTTGGTGCGGGCTTGCCAGCGCGGCGAAGACTTC
GACGAGGAGGAGCAACGAGCGATTTACCGCGCTTTGCAGGATGTGCGTGA
GGAACGTAAAGAACGCGGCTTCGCAAGGGGACGAGACCCGCACGATGGCA
GGACCTACGGTGGCGCCGGCGCCGGGAGGCGCCAATTCCGAGAGCCCTAT
GGTGGCGCCTACGGTGGCGCCTATGATGGCGGGCGATGGCGATGGTGATG
GCGGGCGCCATGACAACCGGACTCATCACGGCCCGTACGATGGCCCC
back to top