mRNA_P-littoralis_Contig603.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.6.1
Unique NamemRNA_P-littoralis_Contig603.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:33285..34231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size646
Hectar predicted targeting categoryother localisation
Exons2
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.6913502-CDS-P-littoralis_Contig603:33284..335841680791256.6913502-CDS-P-littoralis_Contig603:33284..33584Pylaiella littoralis U1_48CDSP-littoralis_Contig603 33285..33584 -
1680791256.711549-CDS-P-littoralis_Contig603:33887..341121680791256.711549-CDS-P-littoralis_Contig603:33887..34112Pylaiella littoralis U1_48CDSP-littoralis_Contig603 33888..34112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.7234213-UTR-P-littoralis_Contig603:34112..342311680791256.7234213-UTR-P-littoralis_Contig603:34112..34231Pylaiella littoralis U1_48UTRP-littoralis_Contig603 34113..34231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.6.1prot_P-littoralis_Contig603.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 33285..34112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.6.1

>prot_P-littoralis_Contig603.6.1 ID=prot_P-littoralis_Contig603.6.1|Name=mRNA_P-littoralis_Contig603.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MWETKARRDFVENPRIVTAVEQLPSLEGRDSEHQGRGPPEMESSIDRSLF
DRSSMICRELSPVESGSAGGDDLDLERYFSQEMDAMDSCSDSDSNGSLKR
AFEEEPGQGNERKVLETTHLNKGFTEDACASTLEWSQFLESTAEVFQYME
EAKAETLEVCSLAPHSPHQDHKTHD
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mRNA from alignment at P-littoralis_Contig603:33285..34231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.6.1 ID=mRNA_P-littoralis_Contig603.6.1|Name=mRNA_P-littoralis_Contig603.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=947bp|location=Sequence derived from alignment at P-littoralis_Contig603:33285..34231- (Pylaiella littoralis U1_48)
GCGGTAGGGACGGGTATGTCGATGGTGCCATGTTTTCGCTGGAAGCACCA
GTTCCTAGAGTGTTCGACTCGGCAAGCTAATTGTGGGCGGCCGTCTGTCT
CCTTGTGCGGCCGAAAGCTATGTGGGAGACAAAAGCACGTCGAGATTTCG
TCGAAAATCCTCGGATAGTGACCGCAGTAGAGCAGTTGCCGTCTTTGGAA
GGTCGCGACAGTGAGCATCAAGGGCGTGGGCCGCCGGAAATGGAAAGCTC
CATCGATCGAAGCTTGTTTGATCGAAGTTCGATGATTTGTCGAGAATTGA
GTCCTGTAGAAAGCGGAAGTGCTGGCGGCGATGACCTCGACCTCGTGAGT
GCACCGAAAACTAATTGCAATGCAGTTTTAATCAACGTGAATTACACGAT
CGTCCTGAGACGTCGCGGTGTGCCTCGCACATATCGAAGACACTGTGTAC
CTGTAAATGCGGGACGTGTGATCTCACATCGTCGTATGCGATGCACTTCA
GCACTTCGTCGGTGCGCTCCAGTCTAGGTGCGAGTAGGATCTGAAGCACT
CAACTAGAATTGTACATGATTCACTCAATTTGACTCATCGCGTTGCCCGC
TGGTTGCATGCCATAATGCGGGGGACACACGTATGTTGTACAAGTAGGAG
CGATATTTCTCTCAGGAAATGGACGCCATGGATAGTTGCAGTGACAGCGA
CAGCAACGGCTCTTTAAAAAGGGCTTTTGAAGAAGAGCCAGGCCAAGGGA
ATGAACGGAAAGTGCTGGAGACGACTCATCTCAACAAAGGCTTCACCGAA
GACGCGTGTGCTTCCACCCTGGAATGGTCACAATTTCTGGAGTCCACGGC
CGAGGTGTTTCAGTACATGGAGGAAGCAAAGGCCGAAACCCTTGAAGTGT
GTAGTTTGGCGCCTCATTCTCCGCACCAGGACCACAAAACACATGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig603:33285..34231-

>mRNA_P-littoralis_Contig603.6.1 ID=mRNA_P-littoralis_Contig603.6.1|Name=mRNA_P-littoralis_Contig603.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig603:33285..34231- (Pylaiella littoralis U1_48)
ATGTGGGAGACAAAAGCACGTCGAGATTTCGTCGAAAATCCTCGGATAGT
GACCGCAGTAGAGCAGTTGCCGTCTTTGGAAGGTCGCGACAGTGAGCATC
AAGGGCGTGGGCCGCCGGAAATGGAAAGCTCCATCGATCGAAGCTTGTTT
GATCGAAGTTCGATGATTTGTCGAGAATTGAGTCCTGTAGAAAGCGGAAG
TGCTGGCGGCGATGACCTCGACCTCGAGCGATATTTCTCTCAGGAAATGG
ACGCCATGGATAGTTGCAGTGACAGCGACAGCAACGGCTCTTTAAAAAGG
GCTTTTGAAGAAGAGCCAGGCCAAGGGAATGAACGGAAAGTGCTGGAGAC
GACTCATCTCAACAAAGGCTTCACCGAAGACGCGTGTGCTTCCACCCTGG
AATGGTCACAATTTCTGGAGTCCACGGCCGAGGTGTTTCAGTACATGGAG
GAAGCAAAGGCCGAAACCCTTGAAGTGTGTAGTTTGGCGCCTCATTCTCC
GCACCAGGACCACAAAACACATGAT
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