mRNA_P-littoralis_Contig603.52.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.52.2
Unique NamemRNA_P-littoralis_Contig603.52.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig603.52.2 vs. uniprot
Match: A0A6H5KB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB41_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.000e-13
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 GKALAQRPHEVMLRKESAVLKSKIASYREGRKAMGANIFGKGQCA-HDDAAAVPPKNKTESQHQGET 198
            GKALAQRP+EVMLRKESAVLKSKIASYRE RKAMG +IFGK Q    D+A      N    Q + ET
Sbjct:  126 GKALAQRPNEVMLRKESAVLKSKIASYRERRKAMGEHIFGKEQGRDQDNARGSSGNNGRALQQESET 192
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BLAST of mRNA_P-littoralis_Contig603.52.2 vs. uniprot
Match: D8LD21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD21_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.640e-13
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 GKALAQRPHEVMLRKESAVLKSKIASYREGRKAMGANIFGKGQCA-HDDAAAVPPKNKTESQHQGET 198
            GKALAQRP+EVMLRKESAVLKSKIASYRE RKAMG  IFGK Q    D+       N   SQ + ET
Sbjct:  186 GKALAQRPNEVMLRKESAVLKSKIASYRERRKAMGEQIFGKEQGPDQDNVRGSSNYNGQASQQESET 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.52.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB41_9PHAE3.000e-1365.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD21_ECTSI7.640e-1365.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:160592..161508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LD21
PFAMsFKBP_C,TPR_2,TPR_8
Model size314
Max annot lvl2759|Eukaryota
KEGG koko:K09571,ko:K20412
KEGG Pathwayko04915,map04915
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0071704,GO:0071944,GO:0099402,GO:0140096,GO:1901564
Exons2
Evalue1.25e-13
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
EC5.2.1.8
DescriptionFK506 binding
Cds size312
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791258.8864348-CDS-P-littoralis_Contig603:160591..1606541680791258.8864348-CDS-P-littoralis_Contig603:160591..160654Pylaiella littoralis U1_48CDSP-littoralis_Contig603 160592..160654 +
1680791258.8994348-CDS-P-littoralis_Contig603:161259..1615081680791258.8994348-CDS-P-littoralis_Contig603:161259..161508Pylaiella littoralis U1_48CDSP-littoralis_Contig603 161260..161508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.52.2prot_P-littoralis_Contig603.52.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 160592..161508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.52.2

>prot_P-littoralis_Contig603.52.2 ID=prot_P-littoralis_Contig603.52.2|Name=mRNA_P-littoralis_Contig603.52.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
GKALAQRPHEVMLRKESAVLKSKIASYREGRKAMGANIFGKGQCAHDDAA
AVPPKNKTESQHQGETDNGSGTVGGAAGSTPKRFGEQPEECKGWADDLLL
VRV*
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mRNA from alignment at P-littoralis_Contig603:160592..161508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.52.2 ID=mRNA_P-littoralis_Contig603.52.2|Name=mRNA_P-littoralis_Contig603.52.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=917bp|location=Sequence derived from alignment at P-littoralis_Contig603:160592..161508+ (Pylaiella littoralis U1_48)
GGAAAGGCCTTGGCGCAACGTCCGCATGAAGTGATGCTGCGCAAGGAGAG
CGCGGTTCTCAAGGTAATTTGGGTTGTGTCTGTGTGTGTGACCCGTCGAG
AAGTGGCAAGAGCCGAATGCAGAGTGGCAGCAATGCCATGAATAAACCGA
GTCATGCCGTTGTATCAGGCACTCGGGGGCGGGCTGTGTAGTCTTCAATA
TGACCCCCGGAAATCCGTCTACTTGGAAGAAGTTTTCTTTTCTTTTCATC
GTCCAAGGTATGTGCTACGTCGAATTCTCTCTGCGCTACTCCACACAGGG
TGAATCAATTTCCCCATGAACAGCCGGTTGGCTTGGGTTTCGAGAGATAT
GGGTGTGATAGATAGGCACAAAGAAATTTACTGAACATTTCAAGAGCTTT
CGGAGCAGAGGTAGCCGTGTATTTTCATCTTTTTTTTTTTACAACTCCTG
TCAATCATGTCTGTGGACATGTGTGGGTGTATTTATATCCGCCTTGTGGG
ATTATTTTGTTCTGTTGCACGTGAAATGGGTGTCGGGGGAGCGTGGCGGC
GAAATTCCAGAGTCACAACACCGCCCCTCCTTTCTCTTACCCTGCCTGCT
ATTACCAATCGGCGTGTCTCTGGTTCTGCGCTGAAAACATTGGTCTATGA
ACCCATCTACATCACTAGAGCAAGATAGCATCCTACCGAGAGGGCAGAAA
GGCGATGGGTGCAAATATTTTCGGGAAAGGCCAGTGTGCCCACGACGATG
CAGCAGCGGTGCCCCCCAAGAACAAGACGGAATCCCAGCATCAAGGTGAA
ACCGACAATGGCAGCGGCACCGTGGGTGGAGCAGCGGGTAGTACTCCCAA
GCGCTTCGGGGAGCAACCAGAGGAATGCAAAGGATGGGCAGACGATCTCT
TATTGGTGAGAGTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig603:160592..161508+

>mRNA_P-littoralis_Contig603.52.2 ID=mRNA_P-littoralis_Contig603.52.2|Name=mRNA_P-littoralis_Contig603.52.2|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig603:160592..161508+ (Pylaiella littoralis U1_48)
GGAAAGGCCTTGGCGCAACGTCCGCATGAAGTGATGCTGCGCAAGGAGAG
CGCGGTTCTCAAGAGCAAGATAGCATCCTACCGAGAGGGCAGAAAGGCGA
TGGGTGCAAATATTTTCGGGAAAGGCCAGTGTGCCCACGACGATGCAGCA
GCGGTGCCCCCCAAGAACAAGACGGAATCCCAGCATCAAGGTGAAACCGA
CAATGGCAGCGGCACCGTGGGTGGAGCAGCGGGTAGTACTCCCAAGCGCT
TCGGGGAGCAACCAGAGGAATGCAAAGGATGGGCAGACGATCTCTTATTG
GTGAGAGTTTGA
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