mRNA_P-littoralis_Contig603.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Match: D7FVE2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE2_ECTSI) HSP 1 Score: 1044 bits (2700), Expect = 0.000e+0 Identity = 767/1403 (54.67%), Postives = 912/1403 (65.00%), Query Frame = 1
Query: 1 VLASVQEDEVARRIKREKARCVDVRRQRREDSIRKARHARSIVAFQAVWRGGCTRAKTNSILAARRRESEETRYMFQEERLAEGVVALEAERKEKELKLQLDELRTMRREEKRTRAAWALLKRLEETARGEELVRMRAEERSTRSLLDLELQDSRRVELARREAEEGARMWSEDLAVRYLKRLEEDQTVEREAMGAXXXXXXXXXXXXKRELALSRAEGCRMAVEDSASSAWNETYRRQWERCFRQARARSTPIQRAMDPTGVAAARALVCSSPDGSSPYGSLATGTETVAPTSESKSSVNFDGKSLILERARRRESCKIHLDNVFARVLQVRSRRQA--ETKKLAKALDDSG-KFDALANSLGGTTLRKDQVSPREGRGGPAERDGAECELTMDMLSHLGPLQDLTALDLCVEGLTSASLLHECTSLKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPDGFAAGLMSPRHSIPDRNEKSPSALVERAVACGGRLQKLELYHNRIASVHPRALEGMASLTHLDLGRNQLRTLDGQGLQCCPALSTLILSQNLLREPPFPLCLPLLSELWLSGNRISTMSAWASCPTQAVRPPSLGYCSQHCTAANRTSTGASGDSPEGGPTASPQHQDARNSTACGRELEERRGGRKSDVDNRTERETRIGGLSSSGDGEKDTGEVGVWLPTLEVLHLQDNALETLGGRSVLVGCPLLRSFDASFNQLRTPENISWSLPACRELEEVRLHDNPVSKCPNYADAVALSCPRLTRMDGVRVDTQV-HWRAGRNTFAGRADLVVPFLLETDETSDILGVMAADTSTLQPKETVGNHVSDLKGSGTVGLDESCPWCGADTLSTETMTAAVGYIEAGGCR---FGGRDGKGDGSGELDPTSLAREPAGPARDSAEGGKSSRRSTCASCGFTSPDTSLWSVSESRTAHFPLNWEDVCSAGDRWRHNLCRGGSFRGSVRPSEEKGVDDESNTFRDACLRGRAERTSMRRRHRCEERHLAASADINGTEPRAVNGGDKSTSRLVSMAPSRRRLEGGTRGPAKEQAVTKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGRDRFEFDRFLSRPPELADEWWGDSSVTARQHNHETAPRRPTPPSRAKATSNRLISTARAVVTNTPLRSNASGAQEVGTSIDTGLSSPGCGRGTGGRVGDVGSGQAAKKPPSKPRRIVADTGQGE-KETIEKF----GCENARARASD----------ESLARAWGLKDPTVARAMMKRARRMRKFENGESRREKLKDPDRNHGDGQE-THRSGGSEGGWGQGPRAPDARAASPRLAPIVEAWGRSENCDDAVVPTEPEAQQNTRIGGR 4140
++ASV E VARRI+RE AR ++ +R+RR+D+IR+ + AR V FQA+WRG C RA LA+R R++EETR MFQEERLAE VVALEAER+E ELK Q EL MR EKRTRA+WA L+ LEETARGEELVRMRAEER TR+L+D+E+QD RR ++A+RE EE +RM +EDLA+R LK E+ Q +ER M A ++ELA SRAEG RMA EDSAS+ WN +RRQ E C R+A ARSTPIQRA DP GVAAARALVC A G T P+ S + + L++E+ARRRE CK HLD + A L+VR RQA TK L + L G K A S G + +D VSP++ R GPAERDGAEC+LT DMLSHLGPL+DLTAL+LCVEGLTSASLL CTSLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELP+GFAAGLM P IP + E P+ +VERAVACGG LQKLELYHNR+AS++PRAL+G+ASLTHL NLLREPP PLCLPLL+ELWLSGN+I +M +WAS PT+ ++H SGDSP+ ASP Q +++ GR E + GR+S+ ++ET S+ G+ + + VWLP+LEVLHLQDNALETLGGR L GCPLLRSFDASFNQLR P+ IS SL AC LEEVRLHDNP S CPNYADA+ LSCP LT+MDGV +D QV HWRAG N + RADLV+PFLLET ETS+ AA T T ET GN VS+ K S + + CPWCG TL + V +A GRDG D + LDP S EGG+SS STC SCGF P LWSVSESR A ++W+DVCSAG RWR C R ++ +E+ E ++FR ACL+GR ER MRRRHR EER++A A +N ++ T++LV+ +PS R+ + GT PA E+AVTKLQSAFRGFHVRRALQAALDSA+YVDDE+EGLLN+NG DRFE DRFLS PPEL D W G ++V N PR TPPSRAKATS R I TARA V+NTP R + G V + T L S G G+G A K TG+ + +ET E+ G +AR +AS+ LAR WGL DP ARA KRA+R+RKF+NGE +++K R+ G+ T RS G EGGW Q PRAP R A PRLAP+ S+N AV T+P AQQ+TR G R
Sbjct: 1 MVASVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGRCMRALVAPALASRPRQAEETRRMFQEERLAERVVALEAERRELELKHQYTELDAMRYAEKRTRASWAFLRHLEETARGEELVRMRAEERFTRALMDVEIQDLRRAQIAQREEEESSRMHAEDLAMRELKLAEKAQILERVVMQAEDMLARGLKNFKEQELASSRAEGYRMAAEDSASATWNAEFRRQREACLREAWARSTPIQRAADPRGVAAARALVC------------ADGVRT--PSKPEPSELLDERTILMMEQARRREYCKRHLDRISASALRVRKDRQAAAHTKGLGRTLSGHGNKSGARGGSQGEVSFEEDLVSPKKDRAGPAERDGAECQLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAAGLMQPTDPIPAQTETCPT-VVERAVACGG-LQKLELYHNRLASINPRALQGLASLTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPTETRLDSLPERWTKHRAILEGALLELSGDSPQQ-LRASPGDQHLKHTPFLGRVSEGQ--GRESEYG---KQET-----STRGEHGRTYDDATVWLPSLEVLHLQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEISLSLEACSGLEEVRLHDNPASACPNYADAITLSCPHLTQMDGVHLDAQVQHWRAGANAYGRRADLVLPFLLETGETSEARRGAAAATPTTARNETTGNDVSESKASKEASVGDYCPWCGVCTLRAKHANDTVEESDAVNVAEVIVRGRDGARDEASGLDPASGTTNLPQHIPGCVEGGRSSGPSTCVSCGFELPSADLWSVSESRAARSFVSWQDVCSAGGRWRDGFCA--DVRDTIGMGQEE--MSERDSFRKACLQGRVEREKMRRRHRREERNVATGAGVN----------EERTAQLVASSPSVRQ-DVGTTWPANEKAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWLGTTAVAQGNKN---IPRHLTPPSRAKATSIRAIDTARAAVSNTPRRPHPRGGDGVEATSRTRLDSYCTG----------GTGHATKSTILSETVQAVQTGRSDDRETAERTTSDEGSASARDKASEGGGGPERRAKSDLARDWGLTDPRAARAFAKRAKRLRKFQNGEGQKKKNTQHSRSGSGGESATQRSNGGEGGWVQVPRAP--REARPRLAPVG-----SDN--PAVATTDPGAQQSTRRGAR 1339
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Match: A0A6H5JF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF94_9PHAE) HSP 1 Score: 982 bits (2539), Expect = 0.000e+0 Identity = 772/1587 (48.65%), Postives = 909/1587 (57.28%), Query Frame = 1
Query: 1 VLASVQEDEVARRIKREKARCVDVRRQRREDSIRKARHARSIVAFQAVWRGGCTRAKTNSILAARRRESEETRYMFQEERLAEGVVALEAERKEKELKLQLDELRTMRREEKRTRAAWALLKRLEETARGEELVRMRAEERSTRSLLDLELQDSRRVELARREAEEGARMWSEDLAVRYLKRLEEDQTVEREAMGAXXXXXXXXXXXXKRELALSRAEGCRMAVEDSASSAWNETYRRQWERCFRQARARSTPIQRAMDPTGVAAARALVCSSPDGSSPYGSLATGTETVAPTSESKSSVNFDGKS-LILERARRRESCKIHLDNVFARVLQVRSRRQA--ETKKLAKALDDSG-KFDALANSLGGTTLRKDQVSPREGRGGPAERDGAECELTMDMLSHLGPLQDLTALDLCVEGLTSASLLHECTSLKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPDGFAAGLMSPRHSIPDRNEKSPSALVERAVACGGRLQKLELYHNRIASVHPRALEGMASLTHLDLGRNQLRTLDGQGLQCCPALSTLILSQNLLREPPFPLCLPLLSELWLSGNRISTMSAWASCPTQAVRPPSLGYCSQHCTAANRTSTGASGDSPEGGPTASPQHQDARNSTACGRELEERRGGRKSDVDNRTERETRIGGLSSSGDGE--KDTGEVGVWLPTLEVLHLQDNALETLGGRSVLVGCPLLRSFDASFNQLRTPENISWSLPACRELEEVRLHDNPVSKCPNYADAVALSCP-------------------------------------------------RLTRMDGVRVDTQVHWRAGRNTFAGRADLVVPFLLETDETSDILGVMAADTSTLQPKETVGNHVSDLKGSGTVGLDESCPWCGADTLSTETMTAAVGYIEAGGCR---FGGRDGKGDGSGELDPTSLAREPAGPARDSAEGGKSSRRSTCASCGFTSPDTSLWSVSESRTAHFPLNWEDVCSAGDRWRHNLCRGGSFRGSVRPSEEKGVDDESNTFRDACLRGRAERTSMRRRHRCEERHLAASADINGTEPRAVNGGDKSTSRLVSMAPSRRRLEG-------------------------------------------------------------------------------------------------------------GTRGPAKEQAVTKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGRDRFEFDRFLSRPPELADEWWGDSSVTARQHNHETAPRRPTPPSRAKATSNRLISTARAVVTNTPLRSNASGAQEVGTSIDTGLSSPGCGRGTGGRVGDVGSGQAAKKPPSKPRRIVADTGQGE-KETIEKFGCE---NARARASD----------ESLARAWGLKDPTVARAMMKRARRMRKFENGESRREK----------------------LKDPDRNH---GDGQET--HRSGGSEGGWGQGPRAPDARAASPRLAPIVEAWGRSENCDDAVVPTEPEAQQNTRIGG 4137
V+A V E VARRI+RE AR ++ +R+RR+D+IR+ + AR V FQA+WRG C RA LA+RRRE+EE + MFQEERLAE VVALE ER+E ELK Q +EL MR EKRTR +WA + LEETARGEELVRMRAEER TR+L+D+E+QD RR ++ +RE EE RM +EDLA+R LK E+ Q +ER M A ++ELA SRAEGCRMA EDSAS+ WN +RRQ E C R+A ARSTPIQRA+DP G AAARALVC T+ V S+ + S D + L++E+ARRRE CK+HL + A L+VR RQA TK L + L G K A S G + ++ V+ ++ R GPAERDGAEC+LT DMLSHLGPL+DLTAL+LCVEGLTSASLL CTSLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELP+GFA GLMSP IP + E P+ +VERAVACGG LQKLELYHNR+AS+HPRAL+G+ASLTHLD LSQNLLREPP PLCLPLL+ELWLSGN+I +M +WAS P + ++H SGDS E ASP Q +++ GR + E +G RE+ G +S GE + + VWLP+LEVLH+QDNALETLGGR L GCPLLRSFDASFNQLR P+ I+ SL AC LEEVRLHDNP S CPNYADA+ALSCP +L RMDGV +D QVHWRAG NT+ RADLV+PFLLET ETS+ AA T T ET GN V++ K + + CPWCG TL + V +A GRDGK D + LDP S D EGG+SS S C SCGF P LWSVSESR A ++W+ VCSAG RWR C G R + +E+ ESN+FR ACLRGR ER MRRRHR EER++A AD N PR V GG TSRL A S+RRLE GT PA EQAVTKLQSAFRGFHVRRALQAALDSA+YVDDE+EGLLN+NG DRFE DRFLS PPEL D W G + V N PR PTPPSRAKATS RL+ TARAVV+N P + G V + T L S G G+G A K +TG+ + +ET + E +AR +AS+ LAR WGL DP ARA KRA+R+RKF+NGE +++K L+ + H G G E+ RS G E GW Q PRAP R PRLAP+ + D A +P AQQ+TR GG
Sbjct: 11 VVAFVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGHCMRALVAPALASRRREAEEIQRMFQEERLAECVVALEEERREIELKRQCNELDAMRYAEKRTRTSWAFFRHLEETARGEELVRMRAEERLTRALVDVEIQDLRRAQIVQREEEELGRMCAEDLAMRELKLAEKAQMLERVVMQAEDILARGLKNFDEQELASSRAEGCRMAAEDSASATWNAEFRRQRETCLREAWARSTPIQRAVDPRGAAAARALVC---------------TDGVRALSKPEPSELLDERMMLMIEQARRREYCKMHLYRISANALRVRKNRQAAVHTKGLGRTLLGHGNKSGARGGSQGEVSFEENLVASKKDRAGPAERDGAECKLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAVGLMSPTDPIPAQTETCPT-VVERAVACGG-LQKLELYHNRLASIHPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXXLSQNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPKETRLRSLPERWAKHRAILEGALLELSGDSAEQ-LRASPGDQHLKHTPFLGR-VSEGQG-----------RESEYGKQETSLRGEHGRTCDDATVWLPSLEVLHMQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEIALSLEACSGLEEVRLHDNPASACPNYADAIALSCPHVSTSTGIDTPLCTCHRGVYVWDWRGHLYQVRCHCDALFVSYVAFQSLFQLMRMDGVHLDAQVHWRAGANTYGRRADLVLPFLLETGETSEAPHGAAAATPTTARSETTGNDVNESKALKEASVGDCCPWCGVCTLRAKHANNTVEESDAVNVARVIARGRDGKRDEASGLDPASGTTNLPQHIPDCIEGGRSSGPSICVSCGFELPSADLWSVSESRAARSFVSWQGVCSAGGRWRDGFCAG--VRDKIGIGQEE--MSESNSFRKACLRGRVEREKMRRRHRREERNVATGADFNEVGPRTVKGGGDITSRLAPRASSKRRLEVELELGEHHAEERRRQAATQLCSHSGRVDHGGVGASDRACVVLDCASIQPGEDQCNHSYLGTDAFRISPCQASSSRRHTRAARTIQRLWHRRQERTAQLVSSSPSVRQDVGTTWPANEQAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWLGTNVVAQGNKN---IPRHPTPPSRAKATSIRLVDTARAVVSNAPACPHPRGGDGVEATSRTRLDSYCTG----------GTGNATKSTFLSETAQAVETGRSDYRETAGRTSDEGGASARDKASEGGGGPERRAKSDLARDWGLTDPRAARAFAKRAKRLRKFQNGEGQKKKVATTWFVRNVPQLIPLCSATRYLRSQNTQHSRTGSGGESAPQRSNGGERGWVQVPRAP--RETRPRLAPVG-------SDDPAAATNDPGAQQSTRRGG 1541
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.680e-8 Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 3262 QAVTKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGRDRFEFDRFLSRPPELADEW 3444
+A KLQ AFRGFHVRRALQAAL+SARYVD E+EG++ ++ D FL P +L D+W
Sbjct: 1568 EAAVKLQRAFRGFHVRRALQAALESARYVDHELEGMVGLD------VDAFLGTPMQLDDDW 1622
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Match: A0A1Y1IHM8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHM8_KLENI) HSP 1 Score: 61.2 bits (147), Expect = 1.880e-5 Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 2173 WLPTLEVLHLQDNALETLGGRSVLVGCPLLRSFDASFNQLRTPENISWSLPACRELEEVRLHDNPV-SKCPNYADAVALSCPRLTRMDGVRVDTQVHWRAGRNTFAGRADLVVPFL 2517
WLP L+ L+LQDNA+E +G L GC L D SFN + P ++ L R L ++L+DNPV S +Y AV + P L +D V + R+ GR+ L+ L
Sbjct: 1301 WLPNLQRLYLQDNAIEAVGP---LWGCLNLEVLDLSFNCISNPGDLRH-LGCLRSLRSLQLNDNPVASPGSSYPSAVLSAVPWLRELDNEAVTDTLRETVLRSLSTGRSGLLTCLL 1412
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Match: A0A7S2S535_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S535_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.490e-5 Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1621 LQKLELYHNRIASVHPRALEGMASLTHLDLGRNQLRTLDGQGL 1749
LQ+L+LYHN+++ + AL+G+ SLTHLDLGRNQL+ + G+ L
Sbjct: 58 LQRLDLYHNKLSFLPTSALQGLPSLTHLDLGRNQLQHVSGETL 100 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig603.5.1 >prot_P-littoralis_Contig603.5.1 ID=prot_P-littoralis_Contig603.5.1|Name=mRNA_P-littoralis_Contig603.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1380bp VLASVQEDEVARRIKREKARCVDVRRQRREDSIRKARHARSIVAFQAVWRback to top mRNA from alignment at P-littoralis_Contig603:25867..32525- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig603.5.1 ID=mRNA_P-littoralis_Contig603.5.1|Name=mRNA_P-littoralis_Contig603.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6659bp|location=Sequence derived from alignment at P-littoralis_Contig603:25867..32525- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig603:25867..32525- >mRNA_P-littoralis_Contig603.5.1 ID=mRNA_P-littoralis_Contig603.5.1|Name=mRNA_P-littoralis_Contig603.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4140bp|location=Sequence derived from alignment at P-littoralis_Contig603:25867..32525- (Pylaiella littoralis U1_48)back to top |