mRNA_P-littoralis_Contig603.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig603.39.1
Unique NamemRNA_P-littoralis_Contig603.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig603.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig603contigP-littoralis_Contig603:132584..133019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categorysignal anchor
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.917269-UTR-P-littoralis_Contig603:132583..1326661680791256.917269-UTR-P-littoralis_Contig603:132583..132666Pylaiella littoralis U1_48UTRP-littoralis_Contig603 132584..132666 -
1680791256.9415624-UTR-P-littoralis_Contig603:133005..1330191680791256.9415624-UTR-P-littoralis_Contig603:133005..133019Pylaiella littoralis U1_48UTRP-littoralis_Contig603 133006..133019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791256.9321296-CDS-P-littoralis_Contig603:132666..1330051680791256.9321296-CDS-P-littoralis_Contig603:132666..133005Pylaiella littoralis U1_48CDSP-littoralis_Contig603 132667..133005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig603.39.1prot_P-littoralis_Contig603.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig603 132667..133005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig603.39.1

>prot_P-littoralis_Contig603.39.1 ID=prot_P-littoralis_Contig603.39.1|Name=mRNA_P-littoralis_Contig603.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MTKGQLDDLYRLCFGPRQPGMARLKNPLRRACLPAFTLFWLCCFDCCMSL
GIFVGSIRMCFKSFIGHMGRFVLPFPEKGGAVEVFSLVEMMMSLVCAVVL
LSPSLPLLLPPP*
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mRNA from alignment at P-littoralis_Contig603:132584..133019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig603.39.1 ID=mRNA_P-littoralis_Contig603.39.1|Name=mRNA_P-littoralis_Contig603.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig603:132584..133019- (Pylaiella littoralis U1_48)
GATTGCTGGAGACCATGACCAAGGGTCAACTGGATGATCTGTATCGTTTA
TGCTTTGGGCCAAGGCAACCGGGAATGGCCAGGTTAAAAAATCCTTTGCG
CAGGGCGTGCCTTCCTGCGTTCACCTTATTTTGGCTTTGTTGTTTTGATT
GCTGCATGTCGCTAGGCATATTCGTTGGCTCCATAAGGATGTGTTTCAAG
TCATTCATAGGACATATGGGTCGCTTTGTTTTACCCTTCCCGGAGAAAGG
AGGTGCTGTGGAAGTTTTTTCCCTCGTCGAAATGATGATGAGCCTCGTGT
GTGCCGTCGTTCTCTTGTCCCCATCTCTTCCTCTTCTACTTCCACCACCC
TAAGATACCCAACGAAGGAGTTGATGAAGGAATTGTTCAACAGCGTGGCG
AAGTACTGGCAGGAGCACAACCACGGGAAGGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig603:132584..133019-

>mRNA_P-littoralis_Contig603.39.1 ID=mRNA_P-littoralis_Contig603.39.1|Name=mRNA_P-littoralis_Contig603.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig603:132584..133019- (Pylaiella littoralis U1_48)
ATGACCAAGGGTCAACTGGATGATCTGTATCGTTTATGCTTTGGGCCAAG
GCAACCGGGAATGGCCAGGTTAAAAAATCCTTTGCGCAGGGCGTGCCTTC
CTGCGTTCACCTTATTTTGGCTTTGTTGTTTTGATTGCTGCATGTCGCTA
GGCATATTCGTTGGCTCCATAAGGATGTGTTTCAAGTCATTCATAGGACA
TATGGGTCGCTTTGTTTTACCCTTCCCGGAGAAAGGAGGTGCTGTGGAAG
TTTTTTCCCTCGTCGAAATGATGATGAGCCTCGTGTGTGCCGTCGTTCTC
TTGTCCCCATCTCTTCCTCTTCTACTTCCACCACCCTAA
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