mRNA_P-littoralis_Contig60.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.88.1
Unique NamemRNA_P-littoralis_Contig60.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.88.1 vs. uniprot
Match: A0A6H5KJF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.500e-38
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:  164 MGNHDRPQTTKSVLINLWSIVTIFLPIFIIVRPDLLWDLLMVWAAATSVMMIVPPIGWIRPHPYSDFLWNRRR 382
            MGNHDRPQTTKSVLIN+WS +TI LPIFIIVR DLLWDLLMVWAAATS+MM+VPP+GWIRPHPYSDF+WNRRR
Sbjct:    1 MGNHDRPQTTKSVLINMWSTLTIVLPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFVWNRRR 73
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BLAST of mRNA_P-littoralis_Contig60.88.1 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.910e-19
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:  161 RMGNHDRPQTTKSVLINLWSIVTIFLPIFIIVRPDLLWDLLMVWAAATSVMMIVPPIGWIRPHPYSDFLWNRRR 382
            RM  HD+PQT KS++INLWS+V+I  P+ +IVR +    +L VW A T +MMIVPP GW+RPH YSDF WNRRR
Sbjct:  365 RMAKHDKPQTLKSMVINLWSLVSILGPMVLIVRMETWQAVLAVWVAVTLLMMIVPPFGWLRPHAYSDFEWNRRR 438
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BLAST of mRNA_P-littoralis_Contig60.88.1 vs. uniprot
Match: A0A7S2A8U7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8U7_TRICV)

HSP 1 Score: 53.1 bits (126), Expect = 3.460e-5
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 2 
Query:  176 DRPQTTKSVLINLWSIVTIFLPI--FIIVRPDLLWDLLMVWAAATSVMMIVPPIGWIRPHPYSDFLWNR 376
            DR    KS+ IN+ + +  FLPI  +        +  ++ W+ A +  +++PP GW+RPHPYSDF WN+
Sbjct:   35 DRGLDPKSIAINIATTLFFFLPIAAYFDASNARFYCEVVGWSMALA--LLIPPFGWLRPHPYSDFAWNK 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJF0_9PHAE3.500e-3887.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z948_9STRA4.910e-1960.81Sulfotransferase family-domain-containing protein ... [more]
A0A7S2A8U7_TRICV3.460e-537.68Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:413487..417490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1494
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001320.1
Cds size228
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.88.1prot_P-littoralis_Contig60.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 414590..417327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791250.31381-UTR-P-littoralis_Contig60:413486..4145891680791250.31381-UTR-P-littoralis_Contig60:413486..414589Pylaiella littoralis U1_48UTRP-littoralis_Contig60 413487..414589 -
1680791250.4024603-UTR-P-littoralis_Contig60:417327..4174901680791250.4024603-UTR-P-littoralis_Contig60:417327..417490Pylaiella littoralis U1_48UTRP-littoralis_Contig60 417328..417490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791250.327383-CDS-P-littoralis_Contig60:414589..4146381680791250.327383-CDS-P-littoralis_Contig60:414589..414638Pylaiella littoralis U1_48CDSP-littoralis_Contig60 414590..414638 -
1680791250.3388793-CDS-P-littoralis_Contig60:415400..4154301680791250.3388793-CDS-P-littoralis_Contig60:415400..415430Pylaiella littoralis U1_48CDSP-littoralis_Contig60 415401..415430 -
1680791250.363033-CDS-P-littoralis_Contig60:415923..4159621680791250.363033-CDS-P-littoralis_Contig60:415923..415962Pylaiella littoralis U1_48CDSP-littoralis_Contig60 415924..415962 -
1680791250.3800755-CDS-P-littoralis_Contig60:416361..4164111680791250.3800755-CDS-P-littoralis_Contig60:416361..416411Pylaiella littoralis U1_48CDSP-littoralis_Contig60 416362..416411 -
1680791250.3902571-CDS-P-littoralis_Contig60:417267..4173271680791250.3902571-CDS-P-littoralis_Contig60:417267..417327Pylaiella littoralis U1_48CDSP-littoralis_Contig60 417268..417327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.88.1

>prot_P-littoralis_Contig60.88.1 ID=prot_P-littoralis_Contig60.88.1|Name=mRNA_P-littoralis_Contig60.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MGNHDRPQTTKSVLINLWSIVTIFLPIFIIVRPDLLWDLLMVWAAATSVM
MIVPPIGWIRPHPYSDFLWNRRRRA*
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mRNA from alignment at P-littoralis_Contig60:413487..417490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.88.1 ID=mRNA_P-littoralis_Contig60.88.1|Name=mRNA_P-littoralis_Contig60.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4004bp|location=Sequence derived from alignment at P-littoralis_Contig60:413487..417490- (Pylaiella littoralis U1_48)
TGCCGTGACGGAGAACGTTAAACCAAAGCAGGTATTGGGGCTGGCTGGCA
GGAACGGAACGGACACAACGGCGGCGGAGCACTGCTGATTAAGGCCGCGG
GTGGGTACGCGGGCAAAGGTTCGTAAGGATAGGAACAGGGAGGAGCCGAG
CGGATAAAACAGGATGGGGAATCACGACAGGCCTCAGACAACCAAGAGCG
TCCTCATCAACTTGTGGTCCATCGTAAGTATGGTGGTGTCAAGCGAGGGA
AAGGGTGGGTGGGGAGGGGCGGGGCGGGGTGTGGGAAGGATACGGCAGGC
AAAAAGAGCGTGTGATATGATATTGTACACCACCGCCGTGCGCAGGTTTA
TTTCTTGGAGGCCCGCCTCCTCAGACCACCGAAAGGTTGGTGTTCGTCTG
TCTGTCGTTGATTGAGTTAAGAGGGAAGAGAGGTAGGAAATTTGTGGGCT
ACCAAAGGCGTGCCATAGCGAGCTTGAGCGCTTCTCGTCGTGTTAGATCA
CCCGGTTGCTAGCAGTATTACTTTTTTTAACAGCGATATATTTGCACCGT
TTTTATGATGCCCACGACACGTGTAACTTAAGGGTGCGCCACGACACCCG
TTGAGATCGAACACGTACCCCAAGGATACGGTAGATTCTCTCGAAGTTGA
ATCGATTTTGCGAGCACCACGAAGGAACTGGCCGAAGAATGCGGGGGACG
CCTGCATTTTTTTTTACAATAAACGATGACCTTCGACGTTTCCAATAATG
AAAATCGGGGAGATAAGGCATGATGTCATGACGTCATGTTGTGCCAAATG
CTTATACTTGTAGTCAGTCTGTCTTCATCTCCTCGGTCTTAACCCTATCG
TCCCCCTGTTGTTTTCCCCACTCGCTGATTTTTGCTGCCCTGTCTGTTGT
TCTTGTGTTGTTGTTGTTGTTGTTGTTGTTTGCTGCCCTGTCTGTTGTTG
TTGCTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
TTTGTGATTGTTTGGCGGCGACGGTGGGCGTGTTTTTTGTTGGGTGGTGG
CGGTGGTGGCGGCGGCTTCGGCAATGCAGGTGACGATCTTCCTACCCATC
TTCATCATCGTCCGGCCAGACCTCTTGTGGTGAGTGAGTAAATCGAGCGG
GTGAACCGTCGGTCCCGGTCACAGAGACATGATGCGCAACGGTGATGGCG
CTCGCTTACAGCTTGCCTGGGTGCGGCACTTGATCACTGCTGCGGTGGGT
AGGTGCTACTATGCTTGATGTGCTCTCGTGGGTTCCCTTGCGGATCAGCC
AACGAAAACGCCTCTTGCTTTTGCTTGGACTGACTGCTGTGCCGAGGGCC
TGAAAAAGTACTCACAGGCAGGATGAGACGAGATAATCAAGCACCAGTCT
TTTTGACTCTCTTTGCGCAACGCCCCCCCCCCCCCCCCGCACCATCCCCC
CCCGCGTCCTCTATCGTTTGGTCTCGTGCCACGCGCGTGCGGTTCGTGCC
TTCTCGAAACTGCCTTCTCGTGCTGCAGGGATTTGCTGATGGTGTGGGCA
GCGGCAACGTCGGTCATGTGAGAAAAATGCCGAGAAAAATAATTACACAT
AAAAGTCTCCGAGAAGACATTGGTGTGGCGCTCCCAACACGCGTTCATCG
CATCGCGTGGGTGCACTAGCATGGTTGGTCTAGGATAAATTTTGTTGGGA
GGTGTGCGTGTATCTTTTCTCTTGGTGTGCGCCGCATCTTTATGGTTGTG
TGCTGCGGTGGGCTGATTGATAGACCTCTCGGCTCTAGGCTAAGTACCCT
TGTAACGTCTCAATATGTAGTGCTCTGCTGCCTAATTTAGCCCCCCGCCA
GAATCCTTGGTGCCCCTCCGTTAAGGGTGAGGCGTTCTCTATGAAGATGC
GACGCTGCCTTTCTGTCCCCGCCCCCTGTCCCCGGGGTTTGACCCCCCGT
CCCTCTATGCTTTCTCTCCGCGCGTGGCCTATATCCCCCGCTTTTTTTTA
TTCGCGTGTACAAAAATCGGCTCTTCATCGATTTCCTGTGGCCCGGCGCA
CGTCACACAGGATGATTGTGCCTCCCATCGGATGGATCAGGTAAAAAATA
TCGTTCATGCGCGATAATATAAAGAAGAAGCATTTGCGAGGCATTTGCGT
ATTGTGTATAGATGTATCATATGTGTGTTGTCTCCCGTCTATTCTGGACA
TCAGCCAGTGTACACCTTTCGGGAAATGAAAAGAGGCGTTTGTGTTGTCT
CCCGTCCATTCTGAACGCCAGTCTATCATACACTTTTCTGGAAATGAAAA
GAGGCATGTGTGTTGCCTCCCGTCCATTCTGGACGCCAGTCTATCATACA
CACACCTTTCGGTATATATTATACGCGGGCGCACTAGCCGGGGCTGGTTC
AAGTCACACAACACGTATTTTCCTTTTCATCTTCCTTCTTTCGACGAGTG
CCCACCTTAGTTTTTAGCCCGAGAAAGGTTCGGCAGTCCGTTTTCCTCTT
CGACATTCGAGTGGAGTTTGCATTATAGTCGACTTAAGTTTACTCGCGAA
ATAACATCTCTCCACTGGTACGGCAGTAGTAGGTCATGGTGTGTGAGTAG
AAAAATATACCGGCTCGTGGGACTTCTCCGACGTCCGGACTCACGACCTA
ATGCTGCTGCGACTGAGGCACCGGCGCAACTGACCGAGGCATGCAAGTGT
CTGTGCATCTTGTGGTTTGAGTGAACAGTGAACTAGCCTCCCCCCTCCTG
CGGTATACTTCCGGTGAACTCGCTTCCTCCCACTGTCGCGCGCGTGTTCC
GGGAACGAACGTGCATCTGCAATTGACTGACATACATTCCTTGGCACGGC
AGGCCTCACCCATACTCGGACTTCTTGTGGAACCGGAGGCGGCGGGCTTG
ATGGATGGATATATACGGAGGCGTTGTGTCGGGCTTCCGAAAAGGAAAAG
GAGGCGGTCGGAGGTTTGCTGCCCCGAAAACGGTGCTGTCATGCCCTGTT
CGATTCGATACGGAGGCGACGGCGCGGGGTGTCTACCTCTGGTTGTTCCT
CGATACCGGCGGCGGCGGCGGCGGCGGGGGGGGGGGTTCCCTCTTCGTCA
GCTTCCCTTGCGCGTGGTTTGATGTGTTGGTCGAGCGGTGGCGAATATGA
CAGACGTGACACAAGTGATGCTTCTTGGGCATCCCCAACCCTGATAAACA
AGTAGTTGTGGTGGGAAAAGAAAAGCAGTGATGTAGTTCGGTTGTGCGAA
CTGGAAGAACGTGTGATATGTCATCATTAACATCACCATCGTCGTGAGAC
AGCAGGTGTGCGTGTGTGTGTGTGTGTGGCACGCTCTCACTACAACAGTG
GGTTGAGGTTGAAATGTTGATGGCGGCGGCGGCGGCGGCGGCGGCAGGGA
GGAGGTTGGGGGTTGTCGTGCAGTGCGGAGATCACTTTCGTCGAGTTGTT
AGGCCGGCCGACAGCGGGTTCGCACCTCTGTCGTGGTCATCCTCTTCTGG
AATTGTCCGCTACTATCGTGCCGGGGCCGACACAAATTGCGACCGTTCGC
CAGCACTCTTTGGGGCTCGTTCGGGAGGGACGTCCTTGGCACGGTTGTCG
TCACCAAGTGGTTGTTGGTGCTGATCGAAATTCGCTTTGAGAAGCGGTAG
CGTTTTTTCATTTTGATGGAGGGGGGGGGGTTGCAGCACGTCGTATCGCC
AGGGGCACACGACGAAGAGTCCGTGTCTTAACGCGTACAACTTTTTAGGA
CAGAGCGTCCGTGAGAAGCTTGCGTAGGTCAAACTGGGGAATTGAAACAC
CGTGTGATTAGGTCGGTGGGACCCAACCGTTCGCCTCGGCCACGGCAGCC
AAAGGGTCGTTTTGACCGTTGAGGGCATGTTACCAGATGTAGACCACTAT
AATGTGTTTTTGTTTGCAAGAACAAGTGCCTAACGGTCACCACACAAGCA
CAAGGACGCAACCGCCCTGATATGTACTCTGCCCGCGGGGATCTTCTCTC
CGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:413487..417490-

>mRNA_P-littoralis_Contig60.88.1 ID=mRNA_P-littoralis_Contig60.88.1|Name=mRNA_P-littoralis_Contig60.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig60:413487..417490- (Pylaiella littoralis U1_48)
ATGGGGAATCACGACAGGCCTCAGACAACCAAGAGCGTCCTCATCAACTT
GTGGTCCATCGTGACGATCTTCCTACCCATCTTCATCATCGTCCGGCCAG
ACCTCTTGTGGGATTTGCTGATGGTGTGGGCAGCGGCAACGTCGGTCATG
ATGATTGTGCCTCCCATCGGATGGATCAGGCCTCACCCATACTCGGACTT
CTTGTGGAACCGGAGGCGGCGGGCTTGA
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