mRNA_P-littoralis_Contig60.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.27.1
Unique NamemRNA_P-littoralis_Contig60.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:115169..115597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size429
Hectar predicted targeting categorysignal anchor
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.071271-CDS-P-littoralis_Contig60:115168..1154771680791246.071271-CDS-P-littoralis_Contig60:115168..115477Pylaiella littoralis U1_48CDSP-littoralis_Contig60 115169..115477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.0836427-UTR-P-littoralis_Contig60:115477..1155971680791246.0836427-UTR-P-littoralis_Contig60:115477..115597Pylaiella littoralis U1_48UTRP-littoralis_Contig60 115478..115597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.27.1prot_P-littoralis_Contig60.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 115169..115477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.27.1

>prot_P-littoralis_Contig60.27.1 ID=prot_P-littoralis_Contig60.27.1|Name=mRNA_P-littoralis_Contig60.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MTPLRAYQPGVKVVCVRVFMICACGALVLRLLSTRALLLWSRSLTIGTGA
CLTKKFMRGRLCVLLFVFVSCVESSLLTIHKYEGKLCRSLLLKHMHHTND
FEL
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mRNA from alignment at P-littoralis_Contig60:115169..115597-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.27.1 ID=mRNA_P-littoralis_Contig60.27.1|Name=mRNA_P-littoralis_Contig60.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig60:115169..115597- (Pylaiella littoralis U1_48)
GTCGAGAGGAGCTAATTCGAGGTTGGTCGAGGTCAGGTTTAAGTTGGGGG
CGAATTGAGGGTCAGTCGTCCAAGAGACGGCAGCGCTTGCATTCGTGCGT
TCGCCGGAGGGGGGCAACGCATGACACCGCTGCGAGCGTATCAGCCGGGC
GTAAAGGTAGTGTGCGTGCGTGTGTTCATGATTTGTGCGTGTGGTGCGCT
GGTGCTGAGACTGTTGTCAACCCGTGCCCTATTGCTTTGGTCGCGGAGTC
TTACTATAGGGACGGGTGCATGCCTCACGAAGAAATTCATGCGGGGACGT
TTGTGTGTTCTTTTGTTCGTGTTTGTGTCCTGTGTCGAGAGTTCTTTACT
AACAATACACAAATATGAAGGTAAGTTATGTCGAAGCCTCCTTCTGAAAC
ATATGCATCATACAAATGATTTCGAACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:115169..115597-

>mRNA_P-littoralis_Contig60.27.1 ID=mRNA_P-littoralis_Contig60.27.1|Name=mRNA_P-littoralis_Contig60.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig60:115169..115597- (Pylaiella littoralis U1_48)
ATGACACCGCTGCGAGCGTATCAGCCGGGCGTAAAGGTAGTGTGCGTGCG
TGTGTTCATGATTTGTGCGTGTGGTGCGCTGGTGCTGAGACTGTTGTCAA
CCCGTGCCCTATTGCTTTGGTCGCGGAGTCTTACTATAGGGACGGGTGCA
TGCCTCACGAAGAAATTCATGCGGGGACGTTTGTGTGTTCTTTTGTTCGT
GTTTGTGTCCTGTGTCGAGAGTTCTTTACTAACAATACACAAATATGAAG
GTAAGTTATGTCGAAGCCTCCTTCTGAAACATATGCATCATACAAATGAT
TTCGAACTC
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