mRNA_P-littoralis_Contig60.152.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.152.1
Unique NamemRNA_P-littoralis_Contig60.152.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:616093..617094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size984
Hectar predicted targeting categorysignal peptide
Exons2
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.014518-UTR-P-littoralis_Contig60:616092..6161761680791246.014518-UTR-P-littoralis_Contig60:616092..616176Pylaiella littoralis U1_48UTRP-littoralis_Contig60 616093..616176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.028524-CDS-P-littoralis_Contig60:616176..6165911680791246.028524-CDS-P-littoralis_Contig60:616176..616591Pylaiella littoralis U1_48CDSP-littoralis_Contig60 616177..616591 +
1680791246.0387383-CDS-P-littoralis_Contig60:616609..6170941680791246.0387383-CDS-P-littoralis_Contig60:616609..617094Pylaiella littoralis U1_48CDSP-littoralis_Contig60 616610..617094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.152.1prot_P-littoralis_Contig60.152.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 616177..617094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.152.1

>prot_P-littoralis_Contig60.152.1 ID=prot_P-littoralis_Contig60.152.1|Name=mRNA_P-littoralis_Contig60.152.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=300bp
MRGQCGIAVVAVTLVTTTGKGITPPAATTPDAPVTAPLPLGSIPAPFSTG
DNSRRKCTNRASLLEAAIAGSSSSSRGSAHPIDERDGTPQQLRLPTKSWG
ASQRRQPQEASSCAHASTGDCSQPPFSPSSSSSSSSSSTQRRRREQVAGG
GLTRPSATAASRSSNDKGNNNAKKAAAAVAGIRTLHVRGGGRTSWFGRSN
DKYDEFPPDFDYDEPTATNSEGDDSSSSSTEDSSSSSSTAAPFYWPEDDD
CDDGCGGSVGEEPVGNSAAATAGAAQPSSDGREGSLGLKNLLEEEDDDAA
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mRNA from alignment at P-littoralis_Contig60:616093..617094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.152.1 ID=mRNA_P-littoralis_Contig60.152.1|Name=mRNA_P-littoralis_Contig60.152.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-littoralis_Contig60:616093..617094+ (Pylaiella littoralis U1_48)
GCCTTGTTCAGCTCTCGAGCAGTGCATGTGCAAAAGGGTGTGCTTAAGAG
AGGTTGAGAGGGACGCCCGCTCGCGAGAGTCGTTATGCGAGGGCAGTGTG
GGATCGCCGTCGTTGCGGTAACGCTCGTTACTACCACAGGTAAGGGTATC
ACCCCCCCAGCAGCAACGACGCCAGACGCACCCGTCACAGCCCCACTGCC
GCTCGGCTCGATTCCTGCTCCCTTCAGCACCGGCGACAACAGCAGACGAA
AGTGTACTAACCGAGCATCATTGCTGGAAGCAGCAATAGCCGGCAGCAGC
AGCAGCAGCAGAGGTAGTGCCCATCCCATCGACGAGCGAGATGGTACGCC
ACAGCAGCTGCGTTTGCCGACCAAAAGCTGGGGTGCTTCGCAACGGCGGC
AACCGCAGGAAGCAAGTTCTTGTGCGCACGCCTCGACGGGAGACTGCTCG
CAGCCCCCGTTCTCGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGTAGGAACACACTAGCTCAGCGGAGGCGAAGAGAACAAGTTGCTGGCG
GTGGCCTCACCCGACCTTCTGCTACTGCTGCATCTCGCTCCAGCAACGAC
AAAGGCAACAACAACGCGAAGAAGGCGGCAGCAGCAGTGGCAGGCATTCG
CACCCTTCACGTGAGGGGGGGAGGCCGGACAAGTTGGTTCGGAAGGAGCA
ACGACAAGTACGACGAATTCCCGCCAGATTTTGACTATGACGAGCCTACC
GCGACGAATTCCGAAGGCGATGACAGTAGCAGTAGTTCTACGGAGGACAG
CAGCAGCAGCAGCAGTACCGCTGCTCCGTTCTACTGGCCGGAGGACGATG
ATTGTGATGATGGTTGTGGTGGTAGTGTTGGCGAAGAGCCGGTGGGGAAC
TCAGCAGCAGCGACAGCAGGGGCCGCGCAACCGTCATCAGACGGACGAGA
AGGATCGTTGGGTTTGAAAAATCTCTTGGAGGAAGAGGATGATGATGCCG
CA
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:616093..617094+

>mRNA_P-littoralis_Contig60.152.1 ID=mRNA_P-littoralis_Contig60.152.1|Name=mRNA_P-littoralis_Contig60.152.1|organism=Pylaiella littoralis U1_48|type=CDS|length=900bp|location=Sequence derived from alignment at P-littoralis_Contig60:616093..617094+ (Pylaiella littoralis U1_48)
ATGCGAGGGCAGTGTGGGATCGCCGTCGTTGCGGTAACGCTCGTTACTAC
CACAGGTAAGGGTATCACCCCCCCAGCAGCAACGACGCCAGACGCACCCG
TCACAGCCCCACTGCCGCTCGGCTCGATTCCTGCTCCCTTCAGCACCGGC
GACAACAGCAGACGAAAGTGTACTAACCGAGCATCATTGCTGGAAGCAGC
AATAGCCGGCAGCAGCAGCAGCAGCAGAGGTAGTGCCCATCCCATCGACG
AGCGAGATGGTACGCCACAGCAGCTGCGTTTGCCGACCAAAAGCTGGGGT
GCTTCGCAACGGCGGCAACCGCAGGAAGCAAGTTCTTGTGCGCACGCCTC
GACGGGAGACTGCTCGCAGCCCCCGTTCTCGCCCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCACTCAGCGGAGGCGAAGAGAACAAGTTGCTGGCGGT
GGCCTCACCCGACCTTCTGCTACTGCTGCATCTCGCTCCAGCAACGACAA
AGGCAACAACAACGCGAAGAAGGCGGCAGCAGCAGTGGCAGGCATTCGCA
CCCTTCACGTGAGGGGGGGAGGCCGGACAAGTTGGTTCGGAAGGAGCAAC
GACAAGTACGACGAATTCCCGCCAGATTTTGACTATGACGAGCCTACCGC
GACGAATTCCGAAGGCGATGACAGTAGCAGTAGTTCTACGGAGGACAGCA
GCAGCAGCAGCAGTACCGCTGCTCCGTTCTACTGGCCGGAGGACGATGAT
TGTGATGATGGTTGTGGTGGTAGTGTTGGCGAAGAGCCGGTGGGGAACTC
AGCAGCAGCGACAGCAGGGGCCGCGCAACCGTCATCAGACGGACGAGAAG
GATCGTTGGGTTTGAAAAATCTCTTGGAGGAAGAGGATGATGATGCCGCA
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