mRNA_P-littoralis_Contig60.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.111.1
Unique NamemRNA_P-littoralis_Contig60.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.111.1 vs. uniprot
Match: D8LGY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGY6_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.930e-40
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 3 
Query:  192 MSTAEDAAAE-HEIANPVEECKKWQKKYYRCVKKFGRGYMRGEARPDERDDCLDRFDDFQKCVLDAARKMQEQHSAKKGWW 431
            MS   D  AE HEI+NPVEECKKWQKKYYRCVKKFGRGYMRGEAR +ERDDCL+RFDDFQKCVLDAARKMQEQ SA+KGWW
Sbjct:    1 MSVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQKCVLDAARKMQEQRSARKGWW 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY6_ECTSI4.930e-4085.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:502802..508250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1318
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionUbiquinol-cytochrome C reductase hinge domain
Ec32 orthologEc-14_001440.1
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791251.4162717-UTR-P-littoralis_Contig60:502801..5029921680791251.4162717-UTR-P-littoralis_Contig60:502801..502992Pylaiella littoralis U1_48UTRP-littoralis_Contig60 502802..502992 +
1680791251.471512-UTR-P-littoralis_Contig60:507366..5082501680791251.471512-UTR-P-littoralis_Contig60:507366..508250Pylaiella littoralis U1_48UTRP-littoralis_Contig60 507367..508250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791251.4325132-CDS-P-littoralis_Contig60:502992..5030581680791251.4325132-CDS-P-littoralis_Contig60:502992..503058Pylaiella littoralis U1_48CDSP-littoralis_Contig60 502993..503058 +
1680791251.4422061-CDS-P-littoralis_Contig60:504729..5048521680791251.4422061-CDS-P-littoralis_Contig60:504729..504852Pylaiella littoralis U1_48CDSP-littoralis_Contig60 504730..504852 +
1680791251.4523897-CDS-P-littoralis_Contig60:507312..5073661680791251.4523897-CDS-P-littoralis_Contig60:507312..507366Pylaiella littoralis U1_48CDSP-littoralis_Contig60 507313..507366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.111.1prot_P-littoralis_Contig60.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 502993..507366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.111.1

>prot_P-littoralis_Contig60.111.1 ID=prot_P-littoralis_Contig60.111.1|Name=mRNA_P-littoralis_Contig60.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MSTAEDAAAEHEIANPVEECKKWQKKYYRCVKKFGRGYMRGEARPDERDD
CLDRFDDFQKCVLDAARKMQEQHSAKKGWW*
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mRNA from alignment at P-littoralis_Contig60:502802..508250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.111.1 ID=mRNA_P-littoralis_Contig60.111.1|Name=mRNA_P-littoralis_Contig60.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5449bp|location=Sequence derived from alignment at P-littoralis_Contig60:502802..508250+ (Pylaiella littoralis U1_48)
GAGACGAGAGGTGAAGAAGAAGAAGAGGATAGGCTTCAACCCTTCACCAG
TTGGCTGTCCTATGCCAACCAACAACAGCTGTGGTGTTGACGCGTTCTGC
TCCCACCTTACTGCTGTGTGACGGAGCATCAGATACTACAGCAGCGTGAG
ATCGGCGAGGAGATCTAACGCAGTCGAGGCGGCGGCTCAGCATGTCGACG
GCGGAGGATGCTGCAGCCGAACACGAGATTGCAAATCCGGTCGAAGAATG
CAAAAAGGTCAGTGTCTGACTCCCGAGAGAACTACGAAGTGACTTTTTTG
ACGGATGACATCTATCATAAGGATAAGGATATGTATCATACTCCCTCTGT
CCCGATTTATAAGCGTGATTTGGACAAAATGCGGTCTATCTTGGGCAATT
TTTAGTCTTTTCCCGAACCGTTTTTTTCCTTGGTTTCGCCGCGCTCGCAC
GGAGCGTGCGAACCCGCGCCTTTTTTCAAACCCCAACCAAAAAGGTGTGT
CCCACCCCAGCAGAAGTTGCTCGATATCACCACCCCAACTTTGAACCTCC
GGTGAAAAGCCTTCCCATCTCCTGGTGAGGGATGTCTGCTGCTGGGAGTG
CCTCCCAGGTGTCAAAACGCAAGAATTTCACCACTTCAGAAAAAGAGGTC
CACCGAGTGAGGCAGACGAGGGTGCGGTGGCAGATTGTAAACGTACGGCA
GTTGTGGCGGCCAGGATGTTTAAGAAGGAGCAACTACATTTGGAAATGCT
GTGGAGAATGCAATGCAGTGTTAAGAACGGGGTATGAGTGTTACACGATG
CGAGCACTATACTCGAGTACTGCTGTAAAAGCGACATCCCCAGTGGCGGC
GATTCTACTGCTGCTGTCCACACGCCAACTTCACCCCCGCCCCCTCCCGC
CCCAACTTGATGTCCGAGCTACCCCAATCGACAAACGCGGCGGTGCTGCC
ATAAAATATGCTCGGAGGTGTGTTTTTTTAATGCGGCCATGAGTCATCAG
CACCCGCAGTTCGTTTCTCCCGTGGCTGGGTACAAATATGCTCGATTTTC
CTCGATTTTCACAACCAGGGGATGACAACGGATCATCCCCTCCCTATTTG
ACCGGAACCTTTTTTTTTTGTCCAATGTGATATCTGATTACATACCGAAG
TTGTCCGACGTCTCACAATGACCAAACGACGTATTTTGGAGCATATAGCG
CAAACCACGCTTATATTCGGAATATCCAAATCACGCTTATAAATCGGGAC
AGAGGGAGTATTATACGGAGTACGGTATTTTACACCAGTTCTTCGAAGTC
AGCAGTGTAAATCAAATTGTGTGCTGTTGCCCACACGGCCACCTGTAATA
CAGAAAAGAAGGCACAAGTACCCGATATCTCTACAGCAGAATTCGTACAA
CAGCAGCACGAGGAGAAAAACTTTGTTGTTCTTGATCGGGTATCGCAAAG
ATGCAGTGTGGTCTTAGCCTCATGGATGGTTCATGATTGCACCACTGCAT
TCTGTGCACCCTCTGGCACCTGCTTCTGCTTCAGGGCGTACCTCAATTTG
GTCGCGAACAAAGCTCCTTCCCCCCGTCGCCAGTCAAGTCCATATTTGTA
TACTCCAGAAGTCTTGCTCTCCATTACTTTCTCCACTGCTGTTATTCGTG
ACATCGTTCCTTCTGCACGAGGACAGCCAAGCCTAAAAGATGCTCCCCGG
ATGACCGCAAGGATAACATGAGCACCCCCATTTCAGCATCCGTGCCCCCC
CCCCACCCCCCCACCCCTGCCCAAGAACGGTTGGTAGCAAACCCTCGTAC
AGCAGTACGTAGTATACATGCATCATCACCCACGAATCATACTGTTGTTG
TTGCCTCTCCTTTGACCCCCCCCCCCCCCCTTCTCTACGCACGTAATTTC
TTATGGCACATATTATCCATCCATCCAGTGGCAGAAGAAGTACTATCGGT
GCGTCAAGAAGTTCGGGCGTGGGTACATGCGGGGAGAGGCGAGACCAGAC
GAGAGAGACGACTGCCTCGACCGGTTCGACGACTTTCAGAAGTGTGTCCT
GGTGAGCACCCGCACCCACCGCATCAGCCCTTCCATTTTTCCACGACAAA
AGTTATGATTCGTCATGGTAGTATGATATCATGCACCATCGGCGGCGACG
AAAACATTCTGGACCTTCCAACCTTCTACAAGCTGGGCCGGGCAAGTGAA
CCACAAAACGGCAATTTCACCGCGCGCGGCTCAATTTTTGGAGTTGCAAC
CTGAAATTTTGAGGCGTGATTTGAAAGGCACTCGCCGAGACAACTATCGG
TTGTCCTTTTTTTTTTTTTTCTCGAGATACGACCAAATGTAGATTTCCCG
AATACAGATAACCCCTCGAAAGTAGGACGAAAACTGAAAAAAAAAAAAAG
ACAACCAATAGTTGTCTCGGCGAGCGCCTTCCAAATCACCCCTCAAAATT
TCAAGTTCCACCTCCAAAAATTGGGCCGCGCGCGACAATATTTCGGAAGC
ACAGCTGAAGGGAGCAAAATGGTCAAAAATGCGTAGCCATGATGTGTGCC
CTGGAGTAGGTGGTTCATGAAGAGAGAGCATGATTTGGTGAACAGATAAC
ATTAGATTGCGCGTGCATACTCTGTTCTAGAGTATTGTGCTCCTCCTACG
CACTACTGTGCTCGTGCGTATGTCTGCTGTGCTGTTGTGTGGTTGCTCGT
TACAACAACGAGCGGAGTTGCCGCGAAAATATCTGAATTCCCAAAAAATT
GAAAAAAAATGACGGTTTCATCCCGCTTTTGCGCCGCATATTGGTGCTCT
GTGATTGATTTGAGAACCCTTCATTTGTCTGTACACGTGGAATCGGCCTC
TTTCAACTTGGAGCTTGTGCGCTTTCGTTATACGATTGCAGCGACGCTTG
TAGCAAGGGAAAAGAAGTAGGCAACGGCGACTTATGACCATCTGACACTT
TCTGGCTTTCTTGCCCGGCCCAGCTTGTAAATATAACAAAGTAGTTTGTT
GTGGAGAGGTGAGGGTGCGTTTGCGGTATTCCAAAATCTATGCACCCCGT
TTGTTTTTATTCAAGAGTGCTTTCGTTACGCGCGTGCGCGTTGAGCCTTC
ACGGCGGTATGCTGAAATGTACTCGAAAGGGTGTCGTGATGTCTAACGTC
TCACGCGGGGAGGGGGGGGCGTCATCTACTGCGGGAAGGCGTGTACGCTC
AGGCCGGATGTTATGGGTACGGATTTCTGTTTCACGTACGATGCGGTAAA
TGCACCCCGGAAACAGATTTAAGACAGCACGCGCAACACGCAACCACGGC
GTCCTCTCTGCGTTAAGAGGATCGCTTCCGAAGCACCAAGGCTGTACTCC
TTACATCTCTAGGCTTCTCCGCAGACGGCTGTTGTTCTGTTGGCTTCTCT
CGCGTCAAGGAGATCGAACACCCATGTGTAAAACCCGTGTGCGAGATCGC
GCGGATATTGGGCCTAATATCCGTGCGATTTCGCACACGGGTTTTACACA
CAGGCAGTTGCTCTTGCTGGCATGGATCGATCATGCTCGACACACGGGAA
GTCCACCACAATCAAACCAAGCTGCGAAGAAGCCCAGAGACGTGAGGCTT
ACAGCCTCGGTGGTGTGGTGGCGATCCGGTGACCATGCATGACGGGTGGT
CGGTATAGTTGTGTGGTGTGCGGTGAGCGTTTTTGGCGTAGACGGGGCAC
AGAAAATGCGCAAACGTGGCACAGCTGCTGAAGTTGTTACAATTCACGTG
ACAACAATCCTTGCCCGTAGCGCCTTCGCCTTCATCCCCCCACAACCCAT
ATCTATCTGTCTGTGGATCTACACGGAAGAAATTATTTGCAGTATGTTCA
TGTTGCGTCCTCGTGTTGGATGGCAGAAGGCATGACCAACTGTTCGTCCG
GAGCATAGAAAAAAATGCGGAACTCGCGGCTAGCGCATCATCAAGACGCG
GATGTGCACTCAGCGATACTCCATTCCAAACCAGGATTTGGTGTTTACGC
ATGCTCCGAGAAAATGCGCACACACATGGAACACGCACGTAAATCAAACC
CCCTCTGGGTCATGTAGTATGGGCTCGTTTGGAAAAACTCTTAATATTAG
CTCGATTCGCTCAGGTTCGTTTCCTGGGTGATTTCCGACCTACATACTAT
CCCCCGTGTTCCACAGCATAAAGATCAAGACCCATGCGTGGCGGTAAAAT
ATATGCGGTGAGCTGGATCTTTGGAGGGTAAAAAAAATCAAGATCGTAAT
CCTGGCTTGCATGAACAACGGTCTGACGTCTTTCAAGTAGTCAACCAAAA
TCCTCCGTAGAATGTACTTCGCAACAAAACAACGAATTCAAAGAGAGCTG
GGGTGAAGGTCAGCTAGTACCGAAGACCTTCGCTTCCACCACCCGGCTGA
GTGCTTTTTACACACGCCCTCCTTCCACTACTCGGGGGGGGGGGGGGGGG
CATCAATCTGTTTCTGATTCCGCGTGGCACGTCGTTTGTCTGCCGGTCCG
GTGATCATCAGGACGCAGCACGAAAGATGCAGGAGCAGCACAGCGCGAAG
AAGGGCTGGTGGTGACCCCTTCGGAGGAGCTCTTTAGGGTTTGGAGACGG
TTATCGTCTGTATCATTCGAACTCTGCATTGTCAGCGCGGTGCACCGAAG
GACCGGCTGGTCGTGGGCACGCAACCGGACGTCAGGACAATAGTTTTCTT
TTGGTTCTAAATTTGATGGTTGCGGGCGATTTCATGGAAGGGGGTCAGTG
GTGACGAAAAAGTTTGTTCAGATTGCAGTACCGGCGCACGGCCGCCGAGT
TGCGGTGTCACCCGAGTACAGCCGCTCCTGCTGCAGTATAACACCGTAAA
ACACCTGGTTTATATGATGCAGCACAACGTTGTACAACTGCTGTAGAGAT
CGTTATTCCAAGATCTTGAGGGGAGCGAGTCGGTACAGCAGTCAAATAAT
GTGGTTGGAATGAACTCGTCGAGATTATTCGGTGACATTAATTTTCTGTA
TCGGTTTGGTAACGGCACGCCTCCTTCTTGTCTTGGGAAGTATATAGAGT
AGCCGAGCTTTGACAATCTGCCCCGGGATTTACACACATTTTTTTTTGTA
GTTTCCATGACAAAACAATGGCTAGGGTCGTGGAAAGCGATTATTTCGTG
AGTTCAGCAAAATCGGATTCGACTCGACGGTCGACCAGGGAAAGGGGCGA
CCGAATCCCGCTCGCAGGAAAAGCCAAGGGAAGCAATGCAGAAAAAGGAA
GTAAGTGTATTTGTGTGTTTTTGTGTTTGTTTCCGTCCTTTTATTCTGGG
CACCAGTCTACACCTTGGGGTGTGAAGTGGGTGCACCACAGCCGGAGTCT
CACAGAAAGAAGGTCACACAGAGTGAAGGTCACACACGAGTTTTTTGTCC
CTCCACCCACCTTCCACGGTGTGCTTAAGAATTTTTGTCTGTTTTGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:502802..508250+

>mRNA_P-littoralis_Contig60.111.1 ID=mRNA_P-littoralis_Contig60.111.1|Name=mRNA_P-littoralis_Contig60.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig60:502802..508250+ (Pylaiella littoralis U1_48)
ATGTCGACGGCGGAGGATGCTGCAGCCGAACACGAGATTGCAAATCCGGT
CGAAGAATGCAAAAAGTGGCAGAAGAAGTACTATCGGTGCGTCAAGAAGT
TCGGGCGTGGGTACATGCGGGGAGAGGCGAGACCAGACGAGAGAGACGAC
TGCCTCGACCGGTTCGACGACTTTCAGAAGTGTGTCCTGGACGCAGCACG
AAAGATGCAGGAGCAGCACAGCGCGAAGAAGGGCTGGTGGTGA
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