mRNA_P-littoralis_Contig60.100.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A6H5KJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ37_9PHAE) HSP 1 Score: 549 bits (1414), Expect = 2.050e-182 Identity = 302/484 (62.40%), Postives = 338/484 (69.83%), Query Frame = 1
Query: 46 MVVRSTPCRRSALVPLILCFSFQGAPALGGLEAFLQSPPI-FCGETPIRRPSKRTSSSTRRDLWIACGSDDGWKLRSSPGSTDESS-GEEIED-DGSSSSLPDTIGQNAPLGVPAEKWARVLQSARDKKTEDDRLSPSPQHKPSHVAAVTLQALRRNDEPYPNFGCEIAIRFSSASNPASDFTPGGMRTYIDDPSMPFYRILGDWDEMGPVEDAEIDAAETGKANQQIRVKQGGDSEWSTVSMDFVREGGCWLIERLWIDDKSVAGGGRAGKGDESLP--PPRLSVAELFDEDRLEVMSCKYADYDPASLLTAGG-DWLEERPNPSLSPKAVALTCIISLRQNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLPLNQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVVDV 1479
MV ++T R L PL + + AF+QSP G + +RR SS+ W +LRSS G+ ES+ GE+ ED D S S PDT+G++AP+GV EKW RVL+SAR E LSP+P+H PSHVAAVTLQALRR D PY NFGCEIAIRFSS SNPAS FTPGGMRTYIDDPSMPFYR+L DWDEM PV AEID AE +ANQQ+RV++ GD WSTVS+D V+E GCWLIERLWIDD+SVAGG RAG G E+ P P LSVAELFDEDRLE+MSCKYADYD A L AGG DWLEERPNPSLSPKAVALTCI+SLRQN+D K LN+GCERVIRFCSP NVASTLTPAHFAQYL EPWYAIF +WDELSFHSEDIS+D TADLVVLLRP++EEAWTSVNWELV CDGMWLTERIWVVDV
Sbjct: 1 MVPKTTRRRSLTLAPLSIYLTL--------CAAFVQSPSFRLRGNSIVRRRRASCCSSSGSGCW---------ELRSSLGANGESNVGEDSEDEDASIYSFPDTLGESAPVGVSPEKWERVLRSAR----ETTLLSPNPEHPPSHVAAVTLQALRRTDVPYTNFGCEIAIRFSSTSNPASGFTPGGMRTYIDDPSMPFYRVLSDWDEMAPVGGAEIDVAEPDRANQQVRVRKEGDPAWSTVSLDLVKEDGCWLIERLWIDDRSVAGG-RAGGGREASPXXPAPLSVAELFDEDRLEMMSCKYADYDSACLAAAGGGDWLEERPNPSLSPKAVALTCILSLRQNDDGSGSDAATDDSRRDGEAAGGDAAATAGAGAKA-------TKPRLNEGCERVIRFCSPTNVASTLTPAHFAQYLKEPWYAIFNKWDELSFHSEDISEDESTADLVVLLRPDNEEAWTSVNWELVKCDGMWLTERIWVVDV 455
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: D8LGZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ2_ECTSI) HSP 1 Score: 401 bits (1031), Expect = 4.220e-128 Identity = 218/298 (73.15%), Postives = 235/298 (78.86%), Query Frame = 1
Query: 595 MRTYIDDPSMPFYRILGDWDEMGPVEDAEIDAAETGKANQQIRVKQGGDSEWSTVSMDFVREGGCWLIERLWIDDKSVAGGGRAGKGDESLPPPR--LSVAELFDEDRLEVMSCKYADYDPASLLT-AGGDWLEERPNPSLSPKAVALTCIISLRQNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLPLNQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVVDV 1479
MRTYIDDPSMPFYR+L DWDEM PV AEID A+ +ANQQ+RV++ GD WSTVSMDFV+E GCWLIERLWIDDKSVAGG R+G LSVAELFDEDRLE+MSCKYADYDPA L GG+WLEERPNPSLSPKAVALTCI+SLRQN+D XXXXXXXXXXXXXX K LN+GCERVIRFCSP NVASTLTPAHFAQYL EPWYAIF +WDELSFHSEDIS+D TADLVVLLRP++EEAWTSVNWELV CDGMWLTERIWVVDV
Sbjct: 1 MRTYIDDPSMPFYRVLSDWDEMAPVGGAEIDVADPARANQQVRVRKEGDPAWSTVSMDFVKEDGCWLIERLWIDDKSVAGG-RSGXXXXXXXXXXAPLSVAELFDEDRLEMMSCKYADYDPACLAAEGGGEWLEERPNPSLSPKAVALTCILSLRQNDDGSGSDAATDDXXXXXXXXXXXXXXGATTGAGAKA-----TKPRLNEGCERVIRFCSPTNVASTLTPAHFAQYLKEPWYAIFNQWDELSFHSEDISEDESTADLVVLLRPDNEEAWTSVNWELVKCDGMWLTERIWVVDV 292
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A836CF69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF69_9STRA) HSP 1 Score: 231 bits (590), Expect = 2.970e-65 Identity = 129/318 (40.57%), Postives = 163/318 (51.26%), Query Frame = 1
Query: 595 MRTYIDDPSMPFYRILGDWDEM-----GPVEDAEIDAAETG--------------KANQQIRVKQGGDSEWSTVSMDFVREGGCWLIERLWIDDKSVAGGGRAGKG----DESLPPPRLSVAELFDEDRLEVMSCKYADYDPASLLTAGGDWLEERPNPSLSPKAVALTCIISLRQNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLPLNQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVVDV 1479
MR Y+ DP++PFYRIL +WDEM G A ID T A Q + V++ GDS WSTV++ RE GCWLI+RLW+DD+SV RA G + + E M C++ DYDP L++ WLE+ P+ LSPK V L C+ +LR + N GC IRFCSPNN ASTLTPAHFA YL EPWY I +W E++FHSE+++ DG ADLVVLL+ + + WTS+NW L DG+WLTERIWV DV
Sbjct: 1 MRRYLSDPALPFYRILAEWDEMDTRGGGLSLSASIDPTSTSTSTNGDAPTADAADSAYQAVLVRRTGDSTWSTVNLQMSREHGCWLIDRLWVDDQSVDPSARAAGGAVXXXXXXXXXXXXXXXMLADAANEAMGCRFGDYDPVQLVS----WLEQDPSEELSPKMVVLNCLCALRAKDIPHR-----------------------------------------NAGCALTIRFCSPNNAASTLTPAHFAAYLEEPWYQIIAQWSEMAFHSEEMNADGSEADLVVLLKRQGDAEWTSMNWLLGRYDGLWLTERIWVDDV 273
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S2XYB1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB1_9STRA) HSP 1 Score: 156 bits (394), Expect = 4.200e-37 Identity = 118/428 (27.57%), Postives = 176/428 (41.12%), Query Frame = 1
Query: 364 PLGVPAEKWARVLQSARDKKTEDDRLSPSPQHKPSHVAAVTLQALRRNDEPYPNFGCEIAIRFSSASNPASDFTPGGMRTYIDDPSMPFYRILGDWDEMGPVEDAEIDAAETGK-------ANQQIRVKQGGDSEWSTVSMDFVREGGCWLIERLW----IDDKSVAGGGRAGKGDESLPPPRLSVAELFDEDR--------LEVMSCKYADYD-------PASLLT---------AGGDWLEERPNPSLSPKAVALTCIISLR------------------QNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLPLNQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDGGTAD------LVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWV 1470
P G+ E W R+ ++A+ K + PS P VA + L+ALR N + GC++AIRF S+ NPAS+ P + Y+ D MP Y I+ +W+++ D + E + QQ+ V++ G+ WS V+ +FVRE WLI++LW I+ S G + GK S PPPR + R L + + A P+S LT GG +E S S + +R Q N + N GC+ I F +P N A + P HF YL EPWY+ +EWD++ E +GG + + V L+ ++E+ TS NWE+VLCDG W+ ++WV
Sbjct: 16 PSGMKQEDWDRISRNAKAKWKKFQAEQPSSTQTPREVAVIVLKALRNNHYSDQHQGCQVAIRFCSSENPASEMMPEDLAAYLADDRMP-YAIMCEWEDIDASADGDCSEVENMRRVPDGTQCQQQVFVRRLGEKGWSAVNFEFVRENSEWLIKQLWVNTDINSTSQQDGAQEGKARRSSPPPREGRQKPKKNQRRTQPPDFRLNTAAVRGAGAGALAIPPAPSSPLTQEKTGKEAAVGGGEVEWGRTSSSSSSLEQSMLALGMRPAXXXXXXXTGTQTGGPLQWNPAFAEEMRSTDLMLLCPPEGGSPWTAVSNILLALRAVDTCGR---NWGCQVAINFAAPTNPARDMDPEHFRSYLQEPWYSYLQEWDQMELEDEGQVVEGGGPNGQPIVHIEVSLKKQNEDHATS-NWEMVLCDGKWMVAKVWV 438
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S0JKP0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKP0_9EUKA) HSP 1 Score: 84.0 bits (206), Expect = 1.430e-15 Identity = 42/109 (38.53%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 1201 GCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSED-----------------ISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVVD 1476
G E IRFCSP N AS L+P FAQYL EPWY I EWDE+ D D+ + VL++ +E+WT VNW+L G WLT+ + + +
Sbjct: 3 GAEVAIRFCSPTNAASRLSPRGFAQYLREPWYRILTEWDEMVLDDGDEXXXXXXXXXXXXXXXXXXDESTVVEQSVLVKRTVDESWTVVNWQLSRHSGRWLTDALTITE 111
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S0JII3_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JII3_9EUKA) HSP 1 Score: 80.9 bits (198), Expect = 9.170e-14 Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 1201 GCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDGGTA-----------DLVVLLRPEHEEAWTSVNWELVLCDGMWLTERI 1464
G E +R+CSP N AS L+P FA YL EPWY I WDEL ++ + A D+ VL+R +++WT VNW+L +G WLT+ +
Sbjct: 73 GAEVAVRYCSPTNKASLLSPQVFAAYLKEPWYEILTAWDELDMDEDEDDVEANLAERWEQLRTSLADIDVLVRVRGDDSWTVVNWKLSRHNGRWLTDAL 171
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A8J5XX53_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX53_DIALT) HSP 1 Score: 80.1 bits (196), Expect = 9.750e-14 Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 340 PDTIGQNAPLGVPAEKWARVLQSARDKKTEDDRLSPSPQHKPSHVAAVTLQALRRNDEPYPNFGCEIAIRFSSASNPASDFTPGGMRTYIDDPSMPFYRILGDWDEMGPVEDAEIDAAETGKANQQIRVKQGGDSEWSTVSMDFVREGGCWLIERL 807
P + G +AP ++W + A+ E + PS P V + L ALRR DEPY ++G ++AI S+ SN AS +P Y+ + S Y I +WDEM ++ +I AA+ +A Q++ V++ D+ W+ ++ V+ G W+ E +
Sbjct: 6 PWSSGSSAP-----KRWTATDEPAQALPAE---VLPSTARSPRDVIMLVLNALRRPDEPYDDYGPQLAIAHSAPSNGASQLSPVQFAKYLSEES---YVIFSEWDEMEIEDELQI-AADGQRAYQEVLVRRANDASWTHINWTLVKHAGMWMTESV 149
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S2NRG0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NRG0_9EUKA) HSP 1 Score: 85.1 bits (209), Expect = 1.840e-13 Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 1201 GCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSEDISDDG-------------GTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERI 1464
G E +RFCSP N AS L+P FA YLNEPWYAI EWDE+ +D +D A++ L+R + E WT VNWEL +G WLT+ +
Sbjct: 337 GAEVAVRFCSPTNKASQLSPQAFATYLNEPWYAILTEWDEMQIDEDDEEEDVEAALARRWDELRLNVAEVGTLVRRKGEP-WTVVNWELSRHNGRWLTDSL 436
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S0EJH6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EJH6_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 7.190e-12 Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 1192 LNQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHSE-DISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVVD 1476
LN G +R+CSP N AS+LTP F YL EPWY + EW+E+ E DI G TA++ V R + +++++ V++ L + WL + + + +
Sbjct: 56 LNHGAALSVRYCSPTNGASSLTPEAFKGYLREPWYKLLLEWNEMELDDEEDIDSAGNTAEVDVQCRRDADDSFSIVSFRLSRHNARWLIDSLTITE 151
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Match: A0A7S3WL35_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WL35_EMIHU) HSP 1 Score: 72.4 bits (176), Expect = 1.150e-11 Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 1195 NQGCERVIRFCSPNNVASTLTPAHFAQYLNEPWYAIFKEWDELSFHS--EDISDDGGTADLVVLLRPEHEEAWTSVNWELVLCDGMWLTERIWVV 1473
+ G + CSP N AS L+PA FA YL +PWYAI EWDE+ F E+ G A++ VL+R +E+++ V+W + D WL + + +V
Sbjct: 5 HHGAVVATQHCSPRNRASELSPAVFAGYLQDPWYAILAEWDEMEFDDDEEEAETAVGEAEVQVLVRRGGDESFSMVSWLMSQHDERWLIDSLNIV 99 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig60.100.1 >prot_P-littoralis_Contig60.100.1 ID=prot_P-littoralis_Contig60.100.1|Name=mRNA_P-littoralis_Contig60.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=479bp MVVRSTPCRRSALVPLILCFSFQGAPALGGLEAFLQSPPIFCGETPIRRPback to top mRNA from alignment at P-littoralis_Contig60:436714..445848+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig60.100.1 ID=mRNA_P-littoralis_Contig60.100.1|Name=mRNA_P-littoralis_Contig60.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9135bp|location=Sequence derived from alignment at P-littoralis_Contig60:436714..445848+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig60:436714..445848+ >mRNA_P-littoralis_Contig60.100.1 ID=mRNA_P-littoralis_Contig60.100.1|Name=mRNA_P-littoralis_Contig60.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1437bp|location=Sequence derived from alignment at P-littoralis_Contig60:436714..445848+ (Pylaiella littoralis U1_48)back to top |