mRNA_P-littoralis_Contig60.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.10.1
Unique NamemRNA_P-littoralis_Contig60.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 8.080e-57
Identity = 102/139 (73.38%), Postives = 110/139 (79.14%), Query Frame = 1 
Query:    1 SQSSNPLLWHPAISFVGVQVVAVLDVVPADSGKGARPTGGFGRALKGAAVGAVTSFAGASAALSEYIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDPK 417
            SQ ++ L  HP  S    QV    DVVPA  G+  RP G F RAL+GA+  A T FAGAS+ L+EYIDPDDVGEVVSSDLPPMWVPLAVG VLT+GI LLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKD K
Sbjct:   35 SQQAHALQQHPPASG---QVFDATDVVPASKGQAPRPRGQFERALQGASFTAATGFAGASSVLAEYIDPDDVGEVVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQK 170
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.110e-21
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  142 AAVGAVTSFAGASAALSEYIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 408
            AA  A  + A A AA++  +D + V   +  +LPPMWVPL +GAV+  GI   Q SLG+VM+DEAKLG LSGARAAKQSAR R MFK+K
Sbjct:   18 AATAAFGALASAQAAIAVVVDEEQVVTSMRDELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 7.090e-14
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  178 SAALSEYIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSAR 384
            +A   + +D    GEV   +LPPMWVPLA GAVL +GI +LQ SLGDVM  EA LG+ SGARA K++ R
Sbjct:  444 AARADDTVDDPTSGEVAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.440e-10
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  133 LKGAAVGAVTSFAGASAALSEYIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 408
            L  AA+G +TS    + A     D      +  ++LPP+WVP+    V+  G+ LL  SLGDVMN+EA LG +SGA+A K+  R R  + KK
Sbjct:   51 LSAAAIGVMTSNPSTAVAYETMED------LEIAELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.290e-9
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:  232 SDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 408
            ++LPP+WVP     VL +G+ LL GSLG+V+++E+ LG  SGARA K+  R R  + KK
Sbjct:   65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.530e-8
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  220 EVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKK 408
            +V  ++LPP +VP   G  L +G+ LL GSLG+VM++EA LG  SGARA K+  R R  + KK
Sbjct:   86 DVQFAELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.820e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  238 LPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMF 399
            LPP WVP+ V   L  G+ LLQ SLG+V +DEA LG+ SGARA K+S R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A6U4CKI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CKI4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.230e-6
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  229 SSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARA-AKQSARDRDMF 399
            ++DLPP+WVPL V A+L +GI  LQ  LGDV  +EA L    G +A + + +RDR  F
Sbjct:   79 TADLPPVWVPLGVAALLLVGIGALQLDLGDVFGEEALLDNAIGDKAKSTRESRDRSYF 136
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BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Match: A0A7R9YFD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFD0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.050e-5
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:  106 RPTGGFGRALKGAAVGAVTSFAGASAALSE---YIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLLQGSLGDVMNDEAKLGALSGARA-AKQSARDRDMF 399
            RP  G+ RAL     G     A  S + +     +   D     ++DLPP+WVP+A+ A++ +G  LLQ  LGD+  +E +L    G +A + + AR+R  F
Sbjct:   73 RPAAGYRRALLRPPAGLARKQATLSLSFAPSGVIVAQADAAASATADLPPVWVPIALAALILVGAGLLQLDLGDIFGEEEQLENAIGDKAKSTREARERSYF 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G8H6_ECTSI8.080e-5773.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA1.110e-2157.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y243_HETAK7.090e-1456.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PV07_9STRA1.440e-1041.30Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9ZRN9_9STRA3.290e-949.15Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2V989_9STRA1.530e-849.21Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A6U1Q394_9STRA3.820e-853.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4CKI4_9STRA4.230e-648.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YFD0_9STRA1.050e-533.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:39047..40601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791246.3671942-CDS-P-littoralis_Contig60:39046..392591680791246.3671942-CDS-P-littoralis_Contig60:39046..39259Pylaiella littoralis U1_48CDSP-littoralis_Contig60 39047..39259 +
1680791246.380853-CDS-P-littoralis_Contig60:40394..406011680791246.380853-CDS-P-littoralis_Contig60:40394..40601Pylaiella littoralis U1_48CDSP-littoralis_Contig60 40395..40601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.10.1prot_P-littoralis_Contig60.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 39047..40601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.10.1

>prot_P-littoralis_Contig60.10.1 ID=prot_P-littoralis_Contig60.10.1|Name=mRNA_P-littoralis_Contig60.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
SQSSNPLLWHPAISFVGVQVVAVLDVVPADSGKGARPTGGFGRALKGAAV
GAVTSFAGASAALSEYIDPDDVGEVVSSDLPPMWVPLAVGAVLTIGISLL
QGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDPK*
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mRNA from alignment at P-littoralis_Contig60:39047..40601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.10.1 ID=mRNA_P-littoralis_Contig60.10.1|Name=mRNA_P-littoralis_Contig60.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-littoralis_Contig60:39047..40601+ (Pylaiella littoralis U1_48)
TCCCAGTCGTCCAATCCGTTGCTGTGGCACCCCGCCATCTCTTTCGTTGG
TGTGCAGGTTGTCGCCGTTCTGGACGTTGTCCCTGCCGACAGTGGCAAGG
GGGCGCGACCAACGGGGGGCTTTGGAAGAGCGCTGAAGGGGGCGGCGGTC
GGGGCGGTGACCAGTTTTGCGGGCGCGTCCGCAGCTTTATCAGAGTACAT
TGACCCTGACGATGTGAGTGACTGTCACCTCGTTCAACGGCAGTTGTCGG
TACAAGTTATGGGTTATCGATTCGTGCGATCACGCTTTTCCTTCTTCGTA
CTTGTACACAACCCCATGACATGACCTGTCGCCCCCCGGTGGTTCATTTG
TCAAAGCGTCGAAACCTTCTGACAGCTTAGGTCGTGAGTCTGATTCTCGG
CGCACTGGGTTTCTTTCTCACGCCGTGACCCATCAGCGGAAGGCGATTTT
TCCGCGAGTACGACAAAAGTCGACAAGTAAACGGGACGCCCGGACCTTAC
TCGCGGTAAAAATAAAAAAGAAGGCACGCACCGCAAAAGGAAGGTGGAGA
ATAAAGTAACATGTGTTGACCTTCCTCCTGTGTTACCCCGGCTGATGCGC
CCATAGATGCCGAAAGTGTGTTGTAGCCTGAAGGTCCATCAGAGATGTGG
TAAAATATCACGCAACAAACTCTAAAAAATACCTGCTGCGTACTCTGTAC
GGGGTAGTGGCCAGTGAGAGTGCGGATGGCAATACGTGGATCCATAGACA
CGTGCTTCGTTACCAACAAGCTCCCGGCCCTAGCCTATAGGAATTTCTCC
AGCTCGTTTGATTTGTCACAACTTGTTATATATGTCAGTGTGAAACTCTG
GAGTCGAGCCGAACCCCATCTCTCCCTCCCTCCCTCTCTGTCTAGAGTCA
CTAAAAATTCCCCGGCATTCCGAATCTGGCGTCCTCCCCCCTCTGGAAAT
GTCATCGCCTACTAGAAAAATAAGCGTTACATGAACATAATGGCTGTTCC
AAAATGTTGGTGTCCTGTCGCAAAACCCATGCGCACGTAGATGCGTAAGA
GCAAAACCCCAGGATTTCGAGGGACTACTTTCCTTCATCCCTCACCCCCC
ACTAGAAGATCTCCGGGAGGGGGGGGGATTAATAGACTCTAGTAGGCGTT
TCTAGGCGAGTGCTTTCATATATCATGCCCACGGAGAAATAGAAAGATAA
AACGCCGTGCGTATGAATGGAAATGACTTCTTTTGCGAACCTGAACTGGA
ACCCCCCAGCACCCCCCATCCATCCCCTTCTGTAGCGGCGTGTGGTTGAA
CAACGATGAAATACGTCCGTCTCGCTGACACAATCAAACGCGCGGCAGGT
CGGTGAAGTCGTCAGCAGCGACCTGCCGCCGATGTGGGTGCCGCTCGCGG
TCGGGGCTGTTCTCACGATCGGCATCAGCCTGTTGCAGGGGAGCTTGGGC
GACGTCATGAACGACGAGGCCAAGCTTGGAGCATTGTCGGGAGCGAGGGC
TGCGAAACAAAGTGCTCGCGACCGAGACATGTTCAAGAAGAAGGACCCAA
AATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:39047..40601+

>mRNA_P-littoralis_Contig60.10.1 ID=mRNA_P-littoralis_Contig60.10.1|Name=mRNA_P-littoralis_Contig60.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig60:39047..40601+ (Pylaiella littoralis U1_48)
TCCCAGTCGTCCAATCCGTTGCTGTGGCACCCCGCCATCTCTTTCGTTGG
TGTGCAGGTTGTCGCCGTTCTGGACGTTGTCCCTGCCGACAGTGGCAAGG
GGGCGCGACCAACGGGGGGCTTTGGAAGAGCGCTGAAGGGGGCGGCGGTC
GGGGCGGTGACCAGTTTTGCGGGCGCGTCCGCAGCTTTATCAGAGTACAT
TGACCCTGACGATGTCGGTGAAGTCGTCAGCAGCGACCTGCCGCCGATGT
GGGTGCCGCTCGCGGTCGGGGCTGTTCTCACGATCGGCATCAGCCTGTTG
CAGGGGAGCTTGGGCGACGTCATGAACGACGAGGCCAAGCTTGGAGCATT
GTCGGGAGCGAGGGCTGCGAAACAAAGTGCTCGCGACCGAGACATGTTCA
AGAAGAAGGACCCAAAATAA
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